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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070863 ID=TCONS_00070863|Name=TCONS_00070863|organism=Clytia hemisphaerica|type=transcript|length=1994bp
ATTCTTTTTGGTTTTTTAATTTCCCTCCCCTCATAAAATAACACTTTGTC
ATCTGTTTGGTTCCCAGACATTACCTTCTAGTGAGGGGTGCATAAAAGGT
AAAGGATTTCGTTCACGACGTATTGTAGAACAACGAACACACactcacac
acacacacacaacaTGATTTATATTTTGCTGTTCATTATACCTTCGTGTA
TCCTCGCAAAACCAAATGTACATACACTGGATCAACGAGAAAGATTTTCA
CTGCAACTTATCCCTAAAGAAAACACAATTTTCGAGATGGGCGGATATCA
GAATCAAGAAATTCACAAACCGCGACAGACATCGGACGTCAAAAGAGAAC
AAGAACAGCCATTAAGTATCGCAGAACAGGAAATCCTTTTGAAGTGGTTC
AACAGGCGGAAAGCGTTATGTTTGTGTAAGCGCCACAACCAAAACCCGGA
GACTGGTGACGACATGGTTGGCAAAACCAATGAAAACGCATGGCGTGGAA
AGAGATCCATGGTCTGTGACAAATGCTGGACTAATCAACAAAAAGGGGCC
AAAGCGTGGAGAGGGAGAAGAAAAGCGAAGAGCGGCTCCGCAGCCACGCG
TGAAAAAGCGGAAAGCAGCGCCACAGTGAAGAGGAAGGTTGAAGTGCTCA
AAATTCCTGATTGGCTACAAAAATACAACATCTTATAAATTTGTAAACTT
TTTACAAGAAGGTTCGCCCTGTTATTAAGAACTAGCATTTAAAGAAAGGT
TGAGGGTGGTAGCAAGTCTTCACGGGAGAAAGTAGGATATAAATTGAACA
AAACTAAAAGGGTATTTTCGTAAAATTATTAACCAAAATACCACGCAAAA
TTCTGCGGGAAATAAAAACAAGTGAGTCAAACTTACAGTTTGTGTTCTCT
TCCATGTTTCTTCTCTCTGGGGTTTCCTCTCTTCTTTTACTTGGGTTTTC
CAGACACCAAAAAAACAGGCCAATGCCATCCATCCATTTTGTAttcaata
ttttaaatttattttttatttttataaatttttattgttttatgttAAAC
CTGAAGAAACAAAACATTGAAGCAAATAGAAAATGTCTTAAATTATAATC
CCAAAGAGGTCAAAGAGACATATACTAGTAATTATGTTTTGCAACAACAC
CCAAAAAGCTTTTTCATATATTTGATTATTAAATGTCTGTTCCAAAAAAG
ATGACAGTTGATACTTTTTCAAACATTGATCTTGGTGGAGAAAAGATATA
ATGAAAAGTAAttcctcgttgaaaagataattcagagcgTATTCCTCCTC
CAACGAGATCAGTGTTTGAAAATGAGTggactgccaattttttttgaaca
gACTTCAGCCTAAATATACTCAAAATATACGCCACGCCGACACggcatga
aatttaaaaaactacctaaaaatcaaaattgaataaaattgtACAGTAAA
GCTATGCACATTAATGTGAGATTatatagaaaataaatattgatgTATAA
AAAACTTTAAGTTCTAAAgcaacaaaaatcaaatttagattttttgtatt
tgacaaaaattttagcGATCCAAAAAATACAATAGAAAAGCCCTTTGTCT
AGCCAACTCTCCAATTTTCTACACTCATATTAACGTCAGGTTGTGATGCT
TCGCAAGCGGCGGACAAAACAGGCTGCGCGGTGATGCCAGCAAAACGAAC
TGCTGCATTCAGGTAATAATAAACATTTTTATCAACACCCTGAAGTAAAC
AGACAGGCGAATCAAGAGCAATATCTACCCTGGGTTGAATACCCTGGGTC
ATGAGTTGCCATAGAAACGCACAAGTGTCAGGCCGATGCATTTTCGTTCG
GTAAGTGGTCATTAAGGTCGATAATTGTTCGAAGTCGGTATGGGGAGAAT
CGGAAGAAATCAGAACAAAAGCATCTGTATCGATTCGCTTTTCGAAAGCA
TGATGAAGAAAAGCATGATAATCGACCgtgtcttcatttttcat Run BLAST on NCBI protein sequence of TCONS_00070863-protein >TCONS_00070863-protein ID=TCONS_00070863-protein|Name=TCONS_00070863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MIYILLFIIPSCILAKPNVHTLDQRERFSLQLIPKENTIFEMGGYQNQEI
HKPRQTSDVKREQEQPLSIAEQEILLKWFNRRKALCLCKRHNQNPETGDD
MVGKTNENAWRGKRSMVCDKCWTNQQKGAKAWRGRRKAKSGSAATREKAE
SSATVKRKVEVLKIPDWLQKYNIL Run BLAST on NCBI transcript from alignment at scaffold_58:1014082..1016242+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070863 ID=TCONS_00070863|Name=TCONS_00070863|organism=Clytia hemisphaerica|type=transcript|length=2161bp|location=Sequence derived from alignment at scaffold_58:1014082..1016242+ (Clytia hemisphaerica)
ATTCTTTTTGGTTTTTTAATTTCCCTCCCCTCATAAAATAACACTTTGTC
ATCTGTTTGGTTCCCAGACATTACCTTCTAGTGAGGGGTGCATAAAAGGT
AAAGGATTTCGTTCACGACGTATTGTAGAACAACGAACACACactcacac
acacacacacaacaTGATTTATATTTTGCTGTTCATTATACCTTCGTGTA
TCCTCGCAAAACCAAATGGTAAGTCAAATTGAATACCAAGTTAATGACAC
AAAATTCTTTgcaaaattcaaagtttttctcCTCAGTTTGTTCAAATTTG
AGACTAGTCTACCACTCCTGTTTTTAACTTCTATTCAAGGTTCGAAATGT
AATCGAGattgaagaaattttacttGTCATTTTAGTACATACACTGGATC
AACGAGAAAGATTTTCACTGCAACTTATCCCTAAAGAAAACACAATTTTC
GAGATGGGCGGATATCAGAATCAAGAAATTCACAAACCGCGACAGACATC
GGACGTCAAAAGAGAACAAGAACAGCCATTAAGTATCGCAGAACAGGAAA
TCCTTTTGAAGTGGTTCAACAGGCGGAAAGCGTTATGTTTGTGTAAGCGC
CACAACCAAAACCCGGAGACTGGTGACGACATGGTTGGCAAAACCAATGA
AAACGCATGGCGTGGAAAGAGATCCATGGTCTGTGACAAATGCTGGACTA
ATCAACAAAAAGGGGCCAAAGCGTGGAGAGGGAGAAGAAAAGCGAAGAGC
GGCTCCGCAGCCACGCGTGAAAAAGCGGAAAGCAGCGCCACAGTGAAGAG
GAAGGTTGAAGTGCTCAAAATTCCTGATTGGCTACAAAAATACAACATCT
TATAAATTTGTAAACTTTTTACAAGAAGGTTCGCCCTGTTATTAAGAACT
AGCATTTAAAGAAAGGTTGAGGGTGGTAGCAAGTCTTCACGGGAGAAAGT
AGGATATAAATTGAACAAAACTAAAAGGGTATTTTCGTAAAATTATTAAC
CAAAATACCACGCAAAATTCTGCGGGAAATAAAAACAAGTGAGTCAAACT
TACAGTTTGTGTTCTCTTCCATGTTTCTTCTCTCTGGGGTTTCCTCTCTT
CTTTTACTTGGGTTTTCCAGACACCAAAAAAACAGGCCAATGCCATCCAT
CCATTTTGTAttcaatattttaaatttattttttatttttataaattttt
attgttttatgttAAACCTGAAGAAACAAAACATTGAAGCAAATAGAAAA
TGTCTTAAATTATAATCCCAAAGAGGTCAAAGAGACATATACTAGTAATT
ATGTTTTGCAACAACACCCAAAAAGCTTTTTCATATATTTGATTATTAAA
TGTCTGTTCCAAAAAAGATGACAGTTGATACTTTTTCAAACATTGATCTT
GGTGGAGAAAAGATATAATGAAAAGTAAttcctcgttgaaaagataattc
agagcgTATTCCTCCTCCAACGAGATCAGTGTTTGAAAATGAGTggactg
ccaattttttttgaacagACTTCAGCCTAAATATACTCAAAATATACGCC
ACGCCGACACggcatgaaatttaaaaaactacctaaaaatcaaaattgaa
taaaattgtACAGTAAAGCTATGCACATTAATGTGAGATTatatagaaaa
taaatattgatgTATAAAAAACTTTAAGTTCTAAAgcaacaaaaatcaaa
tttagattttttgtatttgacaaaaattttagcGATCCAAAAAATACAAT
AGAAAAGCCCTTTGTCTAGCCAACTCTCCAATTTTCTACACTCATATTAA
CGTCAGGTTGTGATGCTTCGCAAGCGGCGGACAAAACAGGCTGCGCGGTG
ATGCCAGCAAAACGAACTGCTGCATTCAGGTAATAATAAACATTTTTATC
AACACCCTGAAGTAAACAGACAGGCGAATCAAGAGCAATATCTACCCTGG
GTTGAATACCCTGGGTCATGAGTTGCCATAGAAACGCACAAGTGTCAGGC
CGATGCATTTTCGTTCGGTAAGTGGTCATTAAGGTCGATAATTGTTCGAA
GTCGGTATGGGGAGAATCGGAAGAAATCAGAACAAAAGCATCTGTATCGA
TTCGCTTTTCGAAAGCATGATGAAGAAAAGCATGATAATCGACCgtgtct
tcatttttcat Coding sequence (CDS) from alignment at scaffold_58:1014082..1016242+ >TCONS_00070863 ID=TCONS_00070863|Name=TCONS_00070863|organism=Clytia hemisphaerica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_58:1014082..1016242+ (Clytia hemisphaerica)
aTGATTTATATTTTGCTGTTCATTATACCTTCGTGTATCCTCGCAAAACC
AAATGTACATACACTGGATCAACGAGAAAGATTTTCACTGCAACTTATCC
CTAAAGAAAACACAATTTTCGAGATGGGCGGATATCAGAATCAAGAAATT
CACAAACCGCGACAGACATCGGACGTCAAAAGAGAACAAGAACAGCCATT
AAGTATCGCAGAACAGGAAATCCTTTTGAAGTGGTTCAACAGGCGGAAAG
CGTTATGTTTGTGTAAGCGCCACAACCAAAACCCGGAGACTGGTGACGAC
ATGGTTGGCAAAACCAATGAAAACGCATGGCGTGGAAAGAGATCCATGGT
CTGTGACAAATGCTGGACTAATCAACAAAAAGGGGCCAAAGCGTGGAGAG
GGAGAAGAAAAGCGAAGAGCGGCTCCGCAGCCACGCGTGAAAAAGCGGAA
AGCAGCGCCACAGTGAAGAGGAAGGTTGAAGTGCTCAAAATTCCTGATTG
GCTACAAAAATACAACATCTTATAAaTGATTTATATTTTGCTGTTCATTA
TACCTTCGTGTATCCTCGCAAAACCAAATGTACATACACTGGATCAACGA
GAAAGATTTTCACTGCAACTTATCCCTAAAGAAAACACAATTTTCGAGAT
GGGCGGATATCAGAATCAAGAAATTCACAAACCGCGACAGACATCGGACG
TCAAAAGAGAACAAGAACAGCCATTAAGTATCGCAGAACAGGAAATCCTT
TTGAAGTGGTTCAACAGGCGGAAAGCGTTATGTTTGTGTAAGCGCCACAA
CCAAAACCCGGAGACTGGTGACGACATGGTTGGCAAAACCAATGAAAACG
CATGGCGTGGAAAGAGATCCATGGTCTGTGACAAATGCTGGACTAATCAA
CAAAAAGGGGCCAAAGCGTGGAGAGGGAGAAGAAAAGCGAAGAGCGGCTC
CGCAGCCACGCGTGAAAAAGCGGAAAGCAGCGCCACAGTGAAGAGGAAGG
TTGAAGTGCTCAAAATTCCTGATTGGCTACAAAAATACAACATCTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070863-exon-scaffold_58-1491911889:1014082..1014299 | TCONS_00070863-exon-scaffold_58-1491911889:1014082..1014299 | Clytia hemisphaerica | exon |
| TCONS_00070863-exon-scaffold_58-1510915933:1014082..1014299 | TCONS_00070863-exon-scaffold_58-1510915933:1014082..1014299 | Clytia hemisphaerica | exon |
| TCONS_00070863-exon-scaffold_58-1575043694:1014082..1014299 | TCONS_00070863-exon-scaffold_58-1575043694:1014082..1014299 | Clytia hemisphaerica | exon |
| TCONS_00070863-exon-scaffold_58-1491911889:1014467..1016242 | TCONS_00070863-exon-scaffold_58-1491911889:1014467..1016242 | Clytia hemisphaerica | exon |
| TCONS_00070863-exon-scaffold_58-1510915933:1014467..1016242 | TCONS_00070863-exon-scaffold_58-1510915933:1014467..1016242 | Clytia hemisphaerica | exon |
| TCONS_00070863-exon-scaffold_58-1575043694:1014467..1016242 | TCONS_00070863-exon-scaffold_58-1575043694:1014467..1016242 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:1014082..1016242 + |
Blast
The following BLAST results are available for this feature:
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