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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070861 ID=TCONS_00070861|Name=TCONS_00070861|organism=Clytia hemisphaerica|type=transcript|length=1776bp
GGAACGATCAATTTCCATTCTTAACCAATGACAAACATGATTGTATGAGC
ATGAAAGTGCTGAGGTCAGCAAAAACGAACACAAGGAAGTAGCAACATTT
TTATCATAGATACAACTTTAGAAAGAATCAGAAGATGAGGTTTGTGGTGC
TTTTATTGACCATGGTGGCTCTTGCCAATGGTCGGCACATTCATCACCAT
CCACGCcaccaacaacaacaagaagaggatGAAATCGATTCTTTGGATGA
AATGGCAGTGGATAACTATGATGATGATGTCAATGATGAAATGctttcca
atggggataaacAAGAAGATGATGGTGAGAGGGTGGAAGATTTTGACGCC
CCACAAAGTGACGCCCTTAAGATGGAGGGAGGAGAAGATGAAGACCCAGT
CAcagatgatgaaaatgaagaagagaacGATGATAATGTAGAGGAATCAA
ATGATGGATTAGAAGAAGAGGATCCACAAGACGAGAGTAGCCAGGACGTA
TCAAACAAAGGCAATGAAGGCGACGAACCTGATCCAAACACGCAAGATGA
AAACAACCAAGAATCGAATGATGGAGACGAAGGTGAAGATCCAGTTACAC
AAGACGAGGATAAAGATGAATTAAGCGATGCTCAGGATGAAGACACTCCA
TCAGAAGCTGATGCATCGGAAGAAGGAGAATCTCCAGAAGCgaagaaaga
tgaaaaagatgAGGACGAAAAGGAAAGTTTCGGTGAAGATCGAGAATTGG
ACGAAGATTTTTTCAGTGAGGAAAAACCCCAACAAAAACAAGAGAAGAAA
GACGAGGGGAAGGTAGATTTGGGAGTTGCTGAAGAAAAAAGCATCGATGA
TCGCAAGGAGATGGAAGAAATGGAGAAGGAGATGACTGGTGCTGGTGCTG
GGgaagagaaaacgaaagtgaaagtggtcAAACCTATGAAACCAACTGAA
AAGACCACAACAGCAGTGAAACCTACTGAAACTACCATCACAGAAAAACC
AACAACAACCACAACTCCAGCCCCTACAACCACGACCGAAGCAACGACCA
CAACAGAAGCAATGACAACGACCACAACAACGAAATCTCCAGCAAAATCT
CCCTCACCTTTGAACAAAATCATGAAACAGTTGAAAATGTTGGGTGACGA
AACAAGTTATTTGACGTCACAAAACCGACATTTACGACGTGCCGTCCACT
TGTTATTCCGACGAATGAACTCACAGAACAGAATCAACAAACGAGAGTTC
AAGAAGCTTGCAAAACGTCTCAAAGAATTGGAAGAAATCAATTCCAACAA
TGGGATTGGGAATGAGTTGTTCGAACGACGACCAGAACGTAACAATAATG
TTGATTGGTGGTGATCTTACATTTTcataaaagtttcatttttgaatAGG
ATGATGAATATAACATCATTTTGTCTAAAGTTCTAATATGGCCCATCTTC
CTTGATTCTTTAACATGAAAGGgcattaaaatcttttttgaactGAAGTA
AAATTTAAGTCTTCTTTGAATATCTTtctgaatattttgaaatagttATG
TATGGTTGTAATAAATTTACAAAGAAATACTGAAaacatcttttataaga
aaaactcTGACCCCCTCTTTTCTAAAATAGTTTTCCTTGGTGATTTTGAC
GTCAACAAAAAGTCGTATGAAATTTTGTACACCCCCTTCTTACAGaccca
atttttccagtgggatgggtttccagtgggtctgtgagaagggggtgtct
tgtagtaaatttaaaaagaaatacat Run BLAST on NCBI protein sequence of TCONS_00070861-protein >TCONS_00070861-protein ID=TCONS_00070861-protein|Name=TCONS_00070861-protein|organism=Clytia hemisphaerica|type=polypeptide|length=409bp
MRFVVLLLTMVALANGRHIHHHPRHQQQQEEDEIDSLDEMAVDNYDDDVN
DEMLSNGDKQEDDGERVEDFDAPQSDALKMEGGEDEDPVTDDENEEENDD
NVEESNDGLEEEDPQDESSQDVSNKGNEGDEPDPNTQDENNQESNDGDEG
EDPVTQDEDKDELSDAQDEDTPSEADASEEGESPEAKKDEKDEDEKESFG
EDRELDEDFFSEEKPQQKQEKKDEGKVDLGVAEEKSIDDRKEMEEMEKEM
TGAGAGEEKTKVKVVKPMKPTEKTTTAVKPTETTITEKPTTTTTPAPTTT
TEATTTTEAMTTTTTTKSPAKSPSPLNKIMKQLKMLGDETSYLTSQNRHL
RRAVHLLFRRMNSQNRINKREFKKLAKRLKELEEINSNNGIGNELFERRP
ERNNNVDWW Run BLAST on NCBI transcript from alignment at scaffold_58:969151..972338+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070861 ID=TCONS_00070861|Name=TCONS_00070861|organism=Clytia hemisphaerica|type=transcript|length=3188bp|location=Sequence derived from alignment at scaffold_58:969151..972338+ (Clytia hemisphaerica)
GGAACGATCAATTTCCATTCTTAACCAATGACAAACATGATTGTATGAGC
ATGAAAGTGCTGAGGTCAGCAAAAACGAACACAAGGAAGTAGCAACATTT
TTATCATAGGTATACAATGTGCTGTGGTAATTTGAACCATTTTCGTTATC
GAAACTTTATTTAATTAATTTGTCTCCTGGCATTAATGACTAAACTCAAA
TCATTTTCTCAGTCAGTTTTCATGAGAATGAGGATGGATGTCTATTTCAT
CTAGTTAGCCTTACTATTTTCGTTTGGTCAAATTTTGGTGGTATATATAA
TGAAATAATTAGACCTTTTACGGCACGTCTGTGTTAATTTCATAAGGTTT
GCTTCCTGCAAAAGCAACTAATGGTTATTTGAATGATATATCATTTCCTT
TGCAAACCCATATTTAAAGAGATGCGAATCAACTTTTGATGCTTTATTTA
TATTTCTCATTTACAGATACAACTTTAGAAAGAATCAGAAGATGAGGTTT
GTGGTGCTTTTATTGACCATGGTGGCTCTTGGTAAGTAGTgaatattctt
tttcatttttccaaatctttagaCTTCCTAGTCTTGtagttttcatttta
aagattaTTGAAGAAATCTGCCACTAGTTCTTTCGCTGAATAACTCTTCT
TCACTCCTCTGATTCTTCCTTATTCCAGCCAGGCTTCCCATCCTTGTGTT
AACGTTTGAGATTAAGCAGGTAACTCTCTCCCACTAATTCTTTCGCTTGG
GATTTTGCAATCCATGTTCCAATCTTCGGACAAAATCAAAGACACCAATC
TGATTCTTTCATCTTTTCATTGCAGCCAATGGTCGGCACATTCATCACCA
TCCACGCcaccaacaacaacaagaagaggatGAAATCGATTCTTTGGATG
AAATGGCAGTGGATAACTATGATGATGATGTCAATGATGAAATGctttcc
aatggggataaacAAGAAGATGATGGTGAGAGGGTGGAAGATTTTGACGC
CCCACAAAGTGACGCCCTTAAGATGGAGGGAGGAGAAGATGAAGACCCAG
TCAcagatgatgaaaatgaagaagagaacGATGATAATGTAGAGGAATCA
AATGATGGATTAGAAGAAGAGGATCCACAAGACGAGAGTAGCCAGGACGT
ATCAAACAAAGGCAATGAAGGCGACGAACCTGATCCAAACACGCAAGATG
AAAACAACCAAGAATCGAATGATGGAGACGAAGGTGAAGATCCAGTTACA
CAAGACGAGGATAAAGATGAATTAAGCGATGCTCAGGATGAAGACACTCC
ATCAGAAGCTGATGCATCGGAAGAAGGAGAATCTCCAGAAGCgaagaaag
atgaaaaagatgAGGACGAAAAGGAAAGTTTCGGTGAAGATCGAGAATTG
GACGAAGATTTTTTCAGTGAGGAAAAACCCCAACAAAAACAAGAGAAGAA
AGACGAGGGGAAGGTAGATTTGGGAGTTGCTGAAGAAAAAAGCATCGATG
ATCGCAAGGAGATGGAAGAAATGGAGAAGGAGATGACTGGTGCTGGTGCT
GGGgaagagaaaacgaaagtgaaagtggtcAAACCTATGAAACCAACTGA
AAAGACCACAACAGCAGTGAAACCTACTGAAACTACCATCACAGAAAAAC
CAACAACAACCACAACTCCAGCCCCTACAACCACGACCGAAGCAACGACC
ACAACAGAAGCAATGACAACGACCACAACAACGAAATCTCCAGCAAAATC
TCCCTCACCTTTGAACAAAATCATGAAACAGTTGAAAAGTAAGTTCGCAT
CAAATCTAAAGACTGTTCAGACATTCATCAGAAACTTTTAAGGGTTCCTT
AAGATCAAGCTCAGGTATGATATACTGGGTCTTGTTAAGAGTAAGCGGGC
ATGCAACCTCgttcccgtgtatcccaggctttatttacgttacttataga
cgccagagaatatactatcagtaagcatcaaaaagctaataatacgcagg
gaacgaggttggcgGACATACATTTATGGTAAATAGATCATAGTTTCTAA
TTGCCTGAAATGGGTTTTGCGTTTTTTAGCTTTTAGCCAATACGCGCtaa
atttactaaaatagcaCAAAGAGCAACTAAAAAGacaatatttcagttaa
attactgAATAGGGAAGTTTGATATATTTTGAAGGAAGTCTAAAAGCATC
ATTATCCACATTATTCGTCGAATTCGCAATTTTGATACATTTGTTTCGAA
AGCATGTTGACAGGGAAGTCCGTTCGACCAATTAGAATTCGGTTAATATT
ACCATAGCAAGAAACCCAAAAGATTTAATTGAGACGAAGATGGATATTGT
TAGTCATTATGCTTTCCAAGAATATTCAACCATCCTTTACCTCGCCCGAC
ATTAGACCTTTTCacaaattacgtcacgaaaatcccttgccttgttttga
aattattaccaaTGTGATTAACTCCCAAGACTTTCTATAGAAATTCCACG
AAAGATAGGTGAAACTTTCTGATATTGCTCCCTATTCTTTCACCATTAGT
GTTGGGTGACGAAACAAGTTATTTGACGTCACAAAACCGACATTTACGAC
GTGCCGTCCACTTGTTATTCCGACGAATGAACTCACAGAACAGAATCAAC
AAACGAGAGTTCAAGAAGCTTGCAAAACGTCTCAAAGAATTGGAAGAAAT
CAATTCCAACAATGGGATTGGGAATGAGTTGTTCGAACGACGACCAGAAC
GTAACAATAATGTTGATTGGTGGTGATCTTACATTTTcataaaagtttca
tttttgaatAGGATGATGAATATAACATCATTTTGTCTAAAGTTCTAATA
TGGCCCATCTTCCTTGATTCTTTAACATGAAAGGgcattaaaatcttttt
tgaactGAAGTAAAATTTAAGTCTTCTTTGAATATCTTtctgaatatttt
gaaatagttATGTATGGTTGTAATAAATTTACAAAGAAATACTGAAaaca
tcttttataagaaaaactcTGACCCCCTCTTTTCTAAAATAGTTTTCCTT
GGTGATTTTGACGTCAACAAAAAGTCGTATGAAATTTTGTACACCCCCTT
CTTACAGacccaatttttccagtgggatgggtttccagtgggtctgtgag
aagggggtgtcttgtagtaaatttaaaaagaaatacat Coding sequence (CDS) from alignment at scaffold_58:969151..972338+ >TCONS_00070861 ID=TCONS_00070861|Name=TCONS_00070861|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_58:969151..972338+ (Clytia hemisphaerica)
ATGAGGTTTGTGGTGCTTTTATTGACCATGGTGGCTCTTGCCAATGGTCG
GCACATTCATCACCATCCACGCcaccaacaacaacaagaagaggatGAAA
TCGATTCTTTGGATGAAATGGCAGTGGATAACTATGATGATGATGTCAAT
GATGAAATGctttccaatggggataaacAAGAAGATGATGGTGAGAGGGT
GGAAGATTTTGACGCCCCACAAAGTGACGCCCTTAAGATGGAGGGAGGAG
AAGATGAAGACCCAGTCAcagatgatgaaaatgaagaagagaacGATGAT
AATGTAGAGGAATCAAATGATGGATTAGAAGAAGAGGATCCACAAGACGA
GAGTAGCCAGGACGTATCAAACAAAGGCAATGAAGGCGACGAACCTGATC
CAAACACGCAAGATGAAAACAACCAAGAATCGAATGATGGAGACGAAGGT
GAAGATCCAGTTACACAAGACGAGGATAAAGATGAATTAAGCGATGCTCA
GGATGAAGACACTCCATCAGAAGCTGATGCATCGGAAGAAGGAGAATCTC
CAGAAGCgaagaaagatgaaaaagatgAGGACGAAAAGGAAAGTTTCGGT
GAAGATCGAGAATTGGACGAAGATTTTTTCAGTGAGGAAAAACCCCAACA
AAAACAAGAGAAGAAAGACGAGGGGAAGGTAGATTTGGGAGTTGCTGAAG
AAAAAAGCATCGATGATCGCAAGGAGATGGAAGAAATGGAGAAGGAGATG
ACTGGTGCTGGTGCTGGGgaagagaaaacgaaagtgaaagtggtcAAACC
TATGAAACCAACTGAAAAGACCACAACAGCAGTGAAACCTACTGAAACTA
CCATCACAGAAAAACCAACAACAACCACAACTCCAGCCCCTACAACCACG
ACCGAAGCAACGACCACAACAGAAGCAATGACAACGACCACAACAACGAA
ATCTCCAGCAAAATCTCCCTCACCTTTGAACAAAATCATGAAACAGTTGA
AAATGTTGGGTGACGAAACAAGTTATTTGACGTCACAAAACCGACATTTA
CGACGTGCCGTCCACTTGTTATTCCGACGAATGAACTCACAGAACAGAAT
CAACAAACGAGAGTTCAAGAAGCTTGCAAAACGTCTCAAAGAATTGGAAG
AAATCAATTCCAACAATGGGATTGGGAATGAGTTGTTCGAACGACGACCA
GAACGTAACAATAATGTTGATTGGTGGTGAATGAGGTTTGTGGTGCTTTT
ATTGACCATGGTGGCTCTTGCCAATGGTCGGCACATTCATCACCATCCAC
GCcaccaacaacaacaagaagaggatGAAATCGATTCTTTGGATGAAATG
GCAGTGGATAACTATGATGATGATGTCAATGATGAAATGctttccaatgg
ggataaacAAGAAGATGATGGTGAGAGGGTGGAAGATTTTGACGCCCCAC
AAAGTGACGCCCTTAAGATGGAGGGAGGAGAAGATGAAGACCCAGTCAca
gatgatgaaaatgaagaagagaacGATGATAATGTAGAGGAATCAAATGA
TGGATTAGAAGAAGAGGATCCACAAGACGAGAGTAGCCAGGACGTATCAA
ACAAAGGCAATGAAGGCGACGAACCTGATCCAAACACGCAAGATGAAAAC
AACCAAGAATCGAATGATGGAGACGAAGGTGAAGATCCAGTTACACAAGA
CGAGGATAAAGATGAATTAAGCGATGCTCAGGATGAAGACACTCCATCAG
AAGCTGATGCATCGGAAGAAGGAGAATCTCCAGAAGCgaagaaagatgaa
aaagatgAGGACGAAAAGGAAAGTTTCGGTGAAGATCGAGAATTGGACGA
AGATTTTTTCAGTGAGGAAAAACCCCAACAAAAACAAGAGAAGAAAGACG
AGGGGAAGGTAGATTTGGGAGTTGCTGAAGAAAAAAGCATCGATGATCGC
AAGGAGATGGAAGAAATGGAGAAGGAGATGACTGGTGCTGGTGCTGGGga
agagaaaacgaaagtgaaagtggtcAAACCTATGAAACCAACTGAAAAGA
CCACAACAGCAGTGAAACCTACTGAAACTACCATCACAGAAAAACCAACA
ACAACCACAACTCCAGCCCCTACAACCACGACCGAAGCAACGACCACAAC
AGAAGCAATGACAACGACCACAACAACGAAATCTCCAGCAAAATCTCCCT
CACCTTTGAACAAAATCATGAAACAGTTGAAAATGTTGGGTGACGAAACA
AGTTATTTGACGTCACAAAACCGACATTTACGACGTGCCGTCCACTTGTT
ATTCCGACGAATGAACTCACAGAACAGAATCAACAAACGAGAGTTCAAGA
AGCTTGCAAAACGTCTCAAAGAATTGGAAGAAATCAATTCCAACAATGGG
ATTGGGAATGAGTTGTTCGAACGACGACCAGAACGTAACAATAATGTTGA
TTGGTGGTGAATGAGGTTTGTGGTGCTTTTATTGACCATGGTGGCTCTTG
CCAATGGTCGGCACATTCATCACCATCCACGCcaccaacaacaacaagaa
gaggatGAAATCGATTCTTTGGATGAAATGGCAGTGGATAACTATGATGA
TGATGTCAATGATGAAATGctttccaatggggataaacAAGAAGATGATG
GTGAGAGGGTGGAAGATTTTGACGCCCCACAAAGTGACGCCCTTAAGATG
GAGGGAGGAGAAGATGAAGACCCAGTCAcagatgatgaaaatgaagaaga
gaacGATGATAATGTAGAGGAATCAAATGATGGATTAGAAGAAGAGGATC
CACAAGACGAGAGTAGCCAGGACGTATCAAACAAAGGCAATGAAGGCGAC
GAACCTGATCCAAACACGCAAGATGAAAACAACCAAGAATCGAATGATGG
AGACGAAGGTGAAGATCCAGTTACACAAGACGAGGATAAAGATGAATTAA
GCGATGCTCAGGATGAAGACACTCCATCAGAAGCTGATGCATCGGAAGAA
GGAGAATCTCCAGAAGCgaagaaagatgaaaaagatgAGGACGAAAAGGA
AAGTTTCGGTGAAGATCGAGAATTGGACGAAGATTTTTTCAGTGAGGAAA
AACCCCAACAAAAACAAGAGAAGAAAGACGAGGGGAAGGTAGATTTGGGA
GTTGCTGAAGAAAAAAGCATCGATGATCGCAAGGAGATGGAAGAAATGGA
GAAGGAGATGACTGGTGCTGGTGCTGGGgaagagaaaacgaaagtgaaag
tggtcAAACCTATGAAACCAACTGAAAAGACCACAACAGCAGTGAAACCT
ACTGAAACTACCATCACAGAAAAACCAACAACAACCACAACTCCAGCCCC
TACAACCACGACCGAAGCAACGACCACAACAGAAGCAATGACAACGACCA
CAACAACGAAATCTCCAGCAAAATCTCCCTCACCTTTGAACAAAATCATG
AAACAGTTGAAAATGTTGGGTGACGAAACAAGTTATTTGACGTCACAAAA
CCGACATTTACGACGTGCCGTCCACTTGTTATTCCGACGAATGAACTCAC
AGAACAGAATCAACAAACGAGAGTTCAAGAAGCTTGCAAAACGTCTCAAA
GAATTGGAAGAAATCAATTCCAACAATGGGATTGGGAATGAGTTGTTCGA
ACGACGACCAGAACGTAACAATAATGTTGATTGGTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070861-exon-scaffold_58-1491911889:969151..969259 | TCONS_00070861-exon-scaffold_58-1491911889:969151..969259 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1510915933:969151..969259 | TCONS_00070861-exon-scaffold_58-1510915933:969151..969259 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1575043694:969151..969259 | TCONS_00070861-exon-scaffold_58-1575043694:969151..969259 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1491911889:969617..969681 | TCONS_00070861-exon-scaffold_58-1491911889:969617..969681 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1510915933:969617..969681 | TCONS_00070861-exon-scaffold_58-1510915933:969617..969681 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1575043694:969617..969681 | TCONS_00070861-exon-scaffold_58-1575043694:969617..969681 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1491911889:969976..970938 | TCONS_00070861-exon-scaffold_58-1491911889:969976..970938 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1510915933:969976..970938 | TCONS_00070861-exon-scaffold_58-1510915933:969976..970938 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1575043694:969976..970938 | TCONS_00070861-exon-scaffold_58-1575043694:969976..970938 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1491911889:971700..972338 | TCONS_00070861-exon-scaffold_58-1491911889:971700..972338 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1510915933:971700..972338 | TCONS_00070861-exon-scaffold_58-1510915933:971700..972338 | Clytia hemisphaerica | exon |
| TCONS_00070861-exon-scaffold_58-1575043694:971700..972338 | TCONS_00070861-exon-scaffold_58-1575043694:971700..972338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:969151..972338 + |
Blast
The following BLAST results are available for this feature:
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