TCONS_00070857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070857
Unique NameTCONS_00070857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070857 ID=TCONS_00070857|Name=TCONS_00070857|organism=Clytia hemisphaerica|type=transcript|length=464bp
TTTTGTTTCATTTGCATCATTTTgtagaatttcaatattttcaatgtaaa
aaatacaatataatttctatagttataatttcatagtttttaacaaaaat
aattcGAAAATAAATTACtcttatcaaaatatttatttatttgtgaTGTG
ATTGGTGTCGAAATCACAGAGTTGGCACATCACACCAAAAACTGCAATCC
AAGTTGTCAACCATtcaaaacttgaaataaaattaGAATAGTCTCTAAAA
TCCTCCAATGATTTACTTTCTGGCTGGGCAACAGTATTGTGGGCAAGTTG
GTACACATTGAGTAACACAGACTGATGGAcatggtggtggtggtggtgga
gCACAACAAACTGGAGCACATGCTGGGGCACATGCAGCTGGGCATGGTGC
GGAACATGGGTTGGCATCACGTTTCAACATTtctgtaaaaaatgaaaaaa
gattcaTAAGTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_58:891179..891852+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070857 ID=TCONS_00070857|Name=TCONS_00070857|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at scaffold_58:891179..891852+ (Clytia hemisphaerica)
TTTTGTTTCATTTGCATCATTTTgtagaatttcaatattttcaatgtaaa
aaatacaatataatttctatagttataatttcatagtttttaacaaaaat
aattcGAAAATAAATTACtcttatcaaaatatttatttatttgtgaTGTG
ATTGGTGTCGAAATCACAGAGTTGGCACATCACACCAAAAACTGCAATCC
AAGTTGTCAACCATtcaaaacttgaaataaaattaGAATAGTCTCTAAAA
TCCTCCAATGATTTACTTTCTGGCTGGGCAACAGTATTGTGGGCAAGTTG
GTACACATTGAGTAACACAGACTGATGGAcatggtggtggtggtggggcG
GGTTGTCCTGGTAATCCTCCTGGTCCTGGTGGTCCTGGCATTCCTGGTGG
TCCTGGAAGTCCGGGTGGTCCAGCTGGTCCTGGGGCTCCTGGTGGTCCTG
GACGTCCTGGGGGTCCTGGGTTTCCTGGAATTGGtgctggtggtggtggt
gggggtggtggtggtggtggaggtggtggtgggggtggtggtggaggtgg
tggtggtggagCACAACAAACTGGAGCACATGCTGGGGCACATGCAGCTG
GGCATGGTGCGGAACATGGGTTGGCATCACGTTTCAACATTtctgtaaaa
aatgaaaaaagattcaTAAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044068XLOC_044068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070857-exon-scaffold_58-1491911889:891179..891514TCONS_00070857-exon-scaffold_58-1491911889:891179..891514Clytia hemisphaericaexon
TCONS_00070857-exon-scaffold_58-1510915933:891179..891514TCONS_00070857-exon-scaffold_58-1510915933:891179..891514Clytia hemisphaericaexon
TCONS_00070857-exon-scaffold_58-1575043694:891179..891514TCONS_00070857-exon-scaffold_58-1575043694:891179..891514Clytia hemisphaericaexon
TCONS_00070857-exon-scaffold_58-1491911889:891725..891852TCONS_00070857-exon-scaffold_58-1491911889:891725..891852Clytia hemisphaericaexon
TCONS_00070857-exon-scaffold_58-1510915933:891725..891852TCONS_00070857-exon-scaffold_58-1510915933:891725..891852Clytia hemisphaericaexon
TCONS_00070857-exon-scaffold_58-1575043694:891725..891852TCONS_00070857-exon-scaffold_58-1575043694:891725..891852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:891179..891852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.315057	0	0	0	0	0	3.59196e-05	18.3333	48.0865	54.6986	0	0	0.000342783	46.6794	0	1.27349e-06	0	0.967029	2.59852	7.38142	0	0	1.02823	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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