TCONS_00070854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070854
Unique NameTCONS_00070854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070854 ID=TCONS_00070854|Name=TCONS_00070854|organism=Clytia hemisphaerica|type=transcript|length=499bp
aaaacttttaaatttgaaaaaatggaatGGAAAATGAATTTTGTTTCATT
TGCATCATTTTgtagaatttcaatattttcaatgtaaaaaatacaatata
atttctatagttataatttcatagtttttaacaaaaataattcGAAAATA
AATTACtcttatcaaaatatttatttatttgtgaTGTGATTGGTGTCGAA
ATCACAGAGTTGGCACATCACACCAAAAACTGCAATCCAAGTTGTCAACC
ATtcaaaacttgaaataaaattaGAATAGTCTCTAAAATCCTCCAATGAT
TTACTTTCTGGCTGGGCAACAGTATTGTGGGCAAGTTGGTACACATTGAG
TAACACAGACTGATGGAcatggtggtggtggtggagCACAACAAACTGGA
GCACATGCTGGGGCACATGCAGCTGGGCATGGTGCGGAACATGGGTTGGC
ATCACGTTTCAACATTtctgtaaaaaatgaaaaaagattcaTAAGTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_58:891141..891852+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070854 ID=TCONS_00070854|Name=TCONS_00070854|organism=Clytia hemisphaerica|type=transcript|length=712bp|location=Sequence derived from alignment at scaffold_58:891141..891852+ (Clytia hemisphaerica)
aaaacttttaaatttgaaaaaatggaatGGAAAATGAATTTTGTTTCATT
TGCATCATTTTgtagaatttcaatattttcaatgtaaaaaatacaatata
atttctatagttataatttcatagtttttaacaaaaataattcGAAAATA
AATTACtcttatcaaaatatttatttatttgtgaTGTGATTGGTGTCGAA
ATCACAGAGTTGGCACATCACACCAAAAACTGCAATCCAAGTTGTCAACC
ATtcaaaacttgaaataaaattaGAATAGTCTCTAAAATCCTCCAATGAT
TTACTTTCTGGCTGGGCAACAGTATTGTGGGCAAGTTGGTACACATTGAG
TAACACAGACTGATGGAcatggtggtggtggtggggcGGGTTGTCCTGGT
AATCCTCCTGGTCCTGGTGGTCCTGGCATTCCTGGTGGTCCTGGAAGTCC
GGGTGGTCCAGCTGGTCCTGGGGCTCCTGGTGGTCCTGGACGTCCTGGGG
GTCCTGGGTTTCCTGGAATTGGtgctggtggtggtggtgggggtggtggt
ggtggtggaggtggtggtgggggtggtggtggaggtggtggtggtggagC
ACAACAAACTGGAGCACATGCTGGGGCACATGCAGCTGGGCATGGTGCGG
AACATGGGTTGGCATCACGTTTCAACATTtctgtaaaaaatgaaaaaaga
ttcaTAAGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044068XLOC_044068Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070854-exon-scaffold_58-1491911889:891141..891511TCONS_00070854-exon-scaffold_58-1491911889:891141..891511Clytia hemisphaericaexon
TCONS_00070854-exon-scaffold_58-1510915933:891141..891511TCONS_00070854-exon-scaffold_58-1510915933:891141..891511Clytia hemisphaericaexon
TCONS_00070854-exon-scaffold_58-1575043694:891141..891511TCONS_00070854-exon-scaffold_58-1575043694:891141..891511Clytia hemisphaericaexon
TCONS_00070854-exon-scaffold_58-1491911889:891725..891852TCONS_00070854-exon-scaffold_58-1491911889:891725..891852Clytia hemisphaericaexon
TCONS_00070854-exon-scaffold_58-1510915933:891725..891852TCONS_00070854-exon-scaffold_58-1510915933:891725..891852Clytia hemisphaericaexon
TCONS_00070854-exon-scaffold_58-1575043694:891725..891852TCONS_00070854-exon-scaffold_58-1575043694:891725..891852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:891141..891852 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.568729	0.483903	9.3478	4.80488	16.6923	10.2244	12.5619	13.8097	9.99047	27.0857	16.9399	29.2649	0	0	42.7213	44.776	46.5054	40.9209	0	0	20.936	3.65786	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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