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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070850 ID=TCONS_00070850|Name=TCONS_00070850|organism=Clytia hemisphaerica|type=transcript|length=4248bpRun BLAST on NCBI transcript from alignment at scaffold_58:859254..870658+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070850 ID=TCONS_00070850|Name=TCONS_00070850|organism=Clytia hemisphaerica|type=transcript|length=11405bp|location=Sequence derived from alignment at scaffold_58:859254..870658+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070850 vs. Swiss-Prot (Human)
Match: CDK12 (Cyclin-dependent kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=2) HSP 1 Score: 490.73 bits (1262), Expect = 1.695e-147 Identity = 229/341 (67.16%), Postives = 269/341 (78.89%), Query Frame = 3
Query: 2160 LVALKKVRLDKEKYGFPITAIREIKILRQLTHKSIVNLKEIVTDKQSAADFRKDKGAFYLVFEYCDHDLMGILDSGFVKFTNEYIASMMKQLLGGLNYCHKKNFLHRDIKCSNILMSNKGEIKLADFGLARLFDSENEGRQYTNRVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFKRKPMFVANTEQTQLEQISRVCGAPTPAVWPDVIHLPYFHNIKPRKQYRRRLLEEYASLPKEALDLLDRMLTMDPSRRSSCEDALKHEFLRDIIPENVEPPKFPEWQDCHEMWSKKRKREARDSAAGRPPSTASKVPNVSDPPSLTA---NTSNTLFKPVK 3173
LVALKKVRLD EK GFPITAIREIKILRQL H+S+VN+KEIVTDKQ A DF+KDKGAFYLVFEY DHDLMG+L+SG V F+ ++I S MKQL+ GL YCHKKNFLHRDIKCSNIL++N G+IKLADFGLARL++SE E R YTN+VITLWYRPPELLLGEERY PAIDVWSCGCILGELF +KP+F AN E QLE ISR+CG+P PAVWPDVI LPYF+ +KP+KQYRRRL EE++ +P ALDLLD MLT+DPS+R + E L+ +FL+D+ + PP P WQDCHE+WSKKR+R+ + P PPS T+ TS T +PVK
Sbjct: 752 LVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSE-ESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGVVVEEP-----------PPSKTSRKETTSGTSTEPVK 1080 The following BLAST results are available for this feature:
BLAST of TCONS_00070850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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