TCONS_00070844 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070844
Unique NameTCONS_00070844
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5898

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070844 ID=TCONS_00070844|Name=TCONS_00070844|organism=Clytia hemisphaerica|type=transcript|length=5898bp
GTCAAAGTGCTTTACAGTATTATACATTACATTGAATGGTAAAACGATTA
GAATTTCATAATTCTCTGGTGAAAGTTCATTTGTTGCATGGGATGAGGTG
GGACGATATCTGGGAAAGTAGCTAGTGACCACTGGCCTGTAGATTCATTT
TAGACtatgtattgatttgattccaGGCATCATTCACTGAGGAAATGGAG
TCACTTTAGCTTCTTTTCTATCAGTTCTTTTCTCTTGTTAGAGCTACATC
TGGTTtggaatatttgaaaattattgaaattcaaatttttgcttaaaaca
aaaaagaaaatagacaTTATGGTCTGAAGattttctacCCAGTCCCTGGT
TGTCGTCCTGCTTTCTTCCAAGAGATTTCCCAGCACCTCACAAATAAGGA
ACCCTGGTTTGTGTCACGTATTTGATTTCTTGGATCTATGGCTACTAAAC
CAACGGATGAAATTGAACCAGAAGGGGAACCAAATGAAGACGTACAGATT
TGGAAACAAATAGTAACAGAGCTATCACTTCAAGCACCGGATCCTCAGAT
CAAATCTTGTCTTCAATTGTACAATCCAGAGAAACCTACAAAATCTATTA
TCGCTAAACTgaccaaaagtttcaaaaaagacaCAATCAACAATTCACGA
CACACTTAACTTCCTGTCAAAACAGGAAGTTGAATCTGCTAACAAGAATG
AACTTGTCCAAAAGCTTTGCCTCAaagtcaaaagcttttttccAGATGTA
TGCCAGATCTGCAACATGTCCTATGTTATCAAACTCAATGATGAACCCTC
TCTCCAGTGTACGTGCACCATGTGGTCAAGAAGTACACCGAGAGTGCTAC
ctgaatattttgaaagataTGAACCTAGTTGATCATAATGAGGCAATACG
TGAtagacttttcaaaattcaatgtcaATCCTGCCAAGAAAACACTGTGT
CTTTCACCCATGATAGTAACACACCAAATCCACCAAGATCAACTGAATCC
CAGGAAAAATCTACTTGGAGTGTAGTAGATGAGGATTATGAGATCAATGC
ACCAATGACAGAAGACGATACTTCCAACACATTAAACCAAACAGCTCGCG
GACCACCAAATGAAATCAACTTGAACAACAGCAACCAAGAGCAACAACAA
TCACGCCCAATATCCTGGATCAAGATCTCAGACCAAATCAAAGACAAATG
ATCAAATATGTCACataaaagaaaaatgtaaatatgAACTGAAAGGCCGA
GACTGTCAATTTATCCATCCTAAAGCCTgaacaaaattgctcaaatatgG
CAACAAACAACCAAGAGGCTGCAACCTAGGTACCAAGTGCCAAAGCTTCC
ACCTGAGGATGTGCTCATCATCTATTACAAGAGGGGAATGCTTTAATCTT
GACTGCAAACTCACGCATGTTTTAAAGGGAACCAAACGACAtcagaaaaa
gcaaaacaatcgtAATGATGAACCTCAAGATTTTCTCACAATCCTGGACA
ACTTTCGCACAGGAATAATCTCTCTTGTGAACAATTGTTTCAGCAACCAA
AACCAACAAATACAATTCAGGAACCACAATTTGTCACATCAACCTCAACA
AACATTCAATCATCAGCATCCCCTACATCATCTACCACCCAAGCACCCAA
CAATGGAACCAACATTTCCAAGAAATCTACTGGGACAGTGACTGCCCTTA
CTGATGCTGACCCGACTACCAAAACTACTTCTAAACCTACACTGAATATG
TTTTCATTTGTCAATATACAAGGACCTTGCCCACAAACAAAACCTTCATC
TGTACCCTACCTCAAAGATCTTACAAACAGCTCAAACCAactgtttttag
gcttttaacCGAAACCTGGTTAACGGACAATCTCAAAAAAGGAGAACTTG
AGAttgaaaattacaattttttaaagaaaaacagagACAGAGTAAAATCG
AAATATGGCAGAGCAAGCAGAGGCGTTGCATTTTATGTGCATAATGACAT
TGCACTATTCTTCGAGCCCATTTTGGAATTCTCGAACGGAGTAAATGAAG
CATtgatgcttttatcaaaaaaatttaatattcttCTGTGTTATCTACAG
ACAACCCCACAATCCACAAACCTGAAGCACCTGAATTACAAGAACTCCTT
TCTGCAATGATAGCAAAAATTGATAGTAttaccatgaaggtaataaagat
acagatggagagaaaacgtctcggtaatgacctaaatggtcgttgaaatc
ttttataaatctattcaaagcggcctttctttgatgtaccatcattggaa
gcaaaaaacatcaatttataactttaaaaGAACAGAAATAGGCCGGTaca
atgattttgaaaaatttaattttgcgagaaatcttagttaaaatgcgatt
cgaaatagtttcaactgatttaaggataaaagaatatattaattttataa
ggatatatttttgggctggcattttgtgaacattgagagtcgcatcacat
tatcattgaaagtttcttatcttgaaatcttcacgtctaagtggacagcg
gttttcatactctgacaaaatgatcgatacaaggttcttaattgtaacac
gtaattctttttcaaatctatcaatggctttatgggcagcttcccctaga
agtttagagtattgtgcttattatgtgaagtttttttcaatttttcatga
caaggctattatatTTCAATATACTTGTTAAAAATGTAATGTCTTTTCAT
TCATCTTTAATATTCTCACGAGTATACcgaaaattaatcatcttattccc
aaagcaaccaaacagctgtttgcttccgatgataaatcagaatagaaaaa
aggcattgactctccatctatctttattaccttcatggtatTACTGATTG
TACACCTGACATATACATCCTTGGGGATTTTAACATACCACACGCGCCTC
TTAATGACGAGACTTCAACCCCAACACGAAATTGCAATAAACAGCTTCTG
GACGtttttttgtgatgacgtcattattttcatatataatttaagtgtca
ctttgtcaatatttggAGTCGATGATTTGTCcttgaaattttctaaatag
catgttttgtATACAACATTTCCTTATTGCaaataatattttattaaaCG
TTTTTATAAATTGCATGTAACAGTTACAGTTACAGTACAGTTTTGACCTG
TGTCAATAGCCTGTGACCTGTCGACTCGAATTAGCCGACTTTTTTTGCAG
AGGTAAATGTCTTTTCAAATTCTTGAAAGGGTCAAATGCTtagaaaaatt
cttgaaatactttaggtgtacaaactttcgcaatCAGAAACTTTTGCTAg
gttcaaaaatatttactttcatgaatttgaggaaaaaatatttttcgcaa
gCACAAACTTTTTcgaatcgttggataaaaatgagaaattttcaacaaaa
ttgttCCTTGAATccgataaaaaattttctttgagttTGAAAAGGTGTTG
AATACTAAGTTTATCCAATTCAAGAAGTATGTTTGTCCCTCTGTCTAAGG
CGGTTTGTGCGcaaatcttttttattatatattgatttgcaaaagtttat
gttctcaataaagatttttttgtcaaatttgcaAAAAGTAAGTGTTGTAA
ATTTCGCATTTTTTGTATTGCAAAGTGCAAATTTGCACGCCTACAGTCTA
ATATTtacatattttcttttctttgtgcTACTGATGTCAGGCCAGTTCTC
ATCTCTCTGTGCATATTCATTTATCAGCCATTCTACCTTAAAATTTATCT
GTAGatatttttgcaatattttcaaaaaatgattcaatttttgcAGGACT
TATTTTTGCAGGCACAGGAACTTGTAAGTTTCCCAGGGGTAAAATTTAAG
GAATCAGCCGCTTTTATTGGCCATTCTATTATAGAATTTACGAGGCAGAC
ATCAAAGTTTCTAGTGTCTGGAAAATATATCTAGCATAACAGTGTGGGgt
tacatttttattaaggtGTCCAAGAATGCTTTAACTTTATATTTCCTAAA
tcttattattttcaatttcttctaaAAATTTGTGTCTTTGTGTCTTATCT
TTagataaataaatcaaaacagaaTGGCTTTAGAAATCAAGAAAGTTTTA
ATCAGTGATAAAGTGGATTCTAGTTGTCAAACAGTGCTTGAAGAAAACAG
CATTGAAGTGGATTACAAACCTGGCCTGTCAAAAGATGAACTCAAAGCTA
TCATCAAGgattACGACGGTCTTATAGTCAGATCAGCCACCAAAGTGACG
CAAGATGTTTATGATTGTGCTGAAAGGTTGAAGATTATTGGCAGAGCTGG
TACTGGTGTGGATAATATTGACCAAATTTCTGCGTCAGCAAAAGGAGTTC
TTGTCATGAACACACCGGGTGGAAATACACTGAGTGCAGCAGAACACACC
TGCGCCATGATCTCTGCTCTTGCAAGACACATTGGTCAAGGTTATGCTTC
AATGTTGGAAGGAAAATGGGAGAGATCTAAGTTTATGGGATGTGAACTCG
GTGGAAAAACACTGGCTATTATCGGGCTTGGTCGGATCGGACGTGAAGTG
GCTTCAAGAATGCAATCTTACGGAATGAAGACGGTGGGTTACGATCCTTT
GGTTTCACCAGAAGAAGCTGCTACATTTGGTGTGGAGtatttacaattaa
aaaatatttggcCCATCGCTGACTTTGTCACAGTTCATGTACCTCTCATC
AAGCCAACACGTGGGATGATCAACGCATCGGTGTTCGAAGTTTGCAAACC
CTCCATGAAAGTGATCAATGTTGCACGTGGTGGAATCATTGATGAAAAGG
ATCTCCTCAACGCATTGAATGCTGGGAAATGTGGGGGAGCAGCACTTGAT
GTCTTCGAAACTGAACCACCTAAAGAGGGCAGTGTCAGCATGGAGTTAGT
GAAACATCCTAAGACCCTATGCACACCACATTTGGGAGCGAGTACGACAG
AAGCACAGTTGCGCGTTGCTAAGGAGATTGCAGAACAATTTGTGGATGCG
GTCAATGGGAAACCCATGGTCGGCTTGGTCAACGCACCAGCTTTATCGCA
ATTGGCCAACCCTTTGTACGCACCTTGGGTGGAACTAGCTCAGAAACTCG
GCTCCCTAGCCTCCAATCTCAGTGATTCAGCAAATTTGACTTTGCATTTG
GATGGTGATGAATTGAAACCAGCCACCAGGCTATTGAACACTGCGCTTTG
TTTTGGACTTGCTAAAGCTAAAGGATTGGACTGCAATATGATCAGTGCTG
TCAGTCTTCTCAAAGAGAAAAACATAGTGGTTGTCAACTCACCAACACCC
AAAGATCTCGCTTACTCTGCTCTCTCTGTTTCAACAAGCGAAAACTCATG
GCTCGTCACCGGCTTTCTGAGCAGAGGAAGACCCTGCATTGGAACTCTCC
AAAATACTGAGCTCGCTAACCCAGTCGTTTTAGAGAGCGGTTTGGTCTAT
GCAGTTTCCGACTCATCAGAGAAAGAACTTCTGCTGACTTCAGCAGAAAT
GGGCGTTTCTTCAGTGAGTCTATCACGGAATGGAAACCGGGTGGTTTTTG
TCGCAAGTGTCGCAGAGAAACCGGCCAACGAACTATTCAAATTCATACAA
TTCTAGggagtatttttgaaattttaggttagataggaaatatttttcaa
aagatatggCGCATATGTCTGAAGTATAGGGAGCTTCTTcgtcatttcaa
atttttgtggtttgtaaattttctttacatatttgaatttttttatttta
ttctgtcAACTAGGATTTTTCCCGATATTTATAAAACTGTAGCTCATAAC
CGAATCAAAAATTACGATATTAATATTCAAGTATTCCTTTGTTCCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_58:827377..836751+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070844 ID=TCONS_00070844|Name=TCONS_00070844|organism=Clytia hemisphaerica|type=transcript|length=9375bp|location=Sequence derived from alignment at scaffold_58:827377..836751+ (Clytia hemisphaerica)
GTCAAAGTGCTTTACAGTATTATACATTACATTGAATGGTAAAACGATTA
GAATTTCATAATTCTCTGGTGAAAGTTCATTTGTTGCATGGGATGAGGTG
GGACGATATCTGGGAAAGTAGCTAGTGACCACTGGCCTGTAGATTCATTT
TAGACtatgtattgatttgattccaGGCATCATTCACTGAGGAAATGGAG
TCACTTTAGCTTCTTTTCTATCAGTTCTTTTCTCTTGTTAGAGCTACATC
TGGTTtggaatatttgaaaattattgaaattcaaatttttgcttaaaaca
aaaaagaaaatagacaTTATGGTCTGAAGGTGATATTATAGATacttttt
tgatactttttaaagGCTTCTTTGTTCATCTcaacaatcatccaatttga
gaAATCCGATGATGGACCATGACTTTGATGCTATTTGAAAGAGCTCTCAT
AAGAGGAAGGTAATTTGGCAGCAGTGGCTCGTCCGGTagtgaattgagaa
aatggtccaattgatgtttaaaattacTTTTGGAGCAGTTTTTGAGGTTA
CAGATGGATTGTGGGAGGGCATTAAATAATCTGGGACCTTCTTCTGACAG
GCAACAGGGAGTCTCCCCATATGTTTTTTTTCCTTATGTTCacctttttt
agattttctacCCAGTCCCTGGTTGTCGTCCTGCTTTCTTCCAAGAGATT
TCCCAGCACCTCACAAATAAGGAACCCTGGTTTGTGTCACGTATTTGATT
TCTTGGATCTATGGCTACTAAACCAACGGATGAAATTGAACCAGAAGGGG
AACCAAATGAAGACGTACAGATTTGGAAACAAATAGTAACAGAGCTATCA
CTTCAAGCACCGGATCCTCAGATCAAATCTTGTCTTCAATTGTACAATCC
AGAGAAACCTACAAAATCTATTATCGCTAAACTgaccaaaagtttcaaaa
aagacaCAATCAACAATTCACGACACACTTAACTTCCTGTCAAAACAGGA
AGTTGAATCTGCTAACAAGAATGAACTTGTCCAAAAGCTTTGCCTCAaag
tcaaaagcttttttccAGATGTATGCCAGATCTGCAACATGTCCTATGTT
ATCAAACTCAATGATGAACCCTCTCTCCAGTGTACGTGCACCATGTGGTC
AAGAAGTACACCGAGAGTGCTACctgaatattttgaaagataTGAACCTA
GTTGATCATAATGAGGCAATACGTGAtagacttttcaaaattcaatgtca
ATCCTGCCAAGAAAACACTGTGTCTTTCACCCATGATAGTAACACACCAA
ATCCACCAAGATCAACTGAATCCCAGGAAAAATCTACTTGGAGTGTAGTA
GATGAGGATTATGAGATCAATGCACCAATGACAGAAGACGATACTTCCAA
CACATTAAACCAAACAGCTCGCGGACCACCAAATGAAATCAACTTGAACA
ACAGCAACCAAGAGCAACAACAATCACGCCCAATATCCTGGATCAAGATC
TCAGACCAAATCAAAGACAAATGATCAAATATGTCACataaaagaaaaat
gtaaatatgAACTGAAAGGCCGAGACTGTCAATTTATCCATCCTAAAGCC
TgaacaaaattgctcaaatatgGCAACAAACAACCAAGAGGCTGCAACCT
AGGTACCAAGTGCCAAAGCTTCCACCTGAGGATGTGCTCATCATCTATTA
CAAGAGGGGAATGCTTTAATCTTGACTGCAAACTCACGCATGTTTTAAAG
GGAACCAAACGACAtcagaaaaagcaaaacaatcgtAATGATGAACCTCA
AGATTTTCTCACAATCCTGGACAACTTTCGCACAGGAATAATCTCTCTTG
TGAACAATTGTTTCAGCAACCAAAACCAACAAATACAATTCAGGAACCAC
AATTTGTCACATCAACCTCAACAAACATTCAATCATCAGCATCCCCTACA
TCATCTACCACCCAAGCACCCAACAATGGAACCAACATTTCCAAGAAATC
TACTGGGACAGTGACTGCCCTTACTGATGCTGACCCGACTACCAAAACTA
CTTCTAAACCTACACTGAATATGTTTTCATTTGTCAATATACAAGGACCT
TGCCCACAAACAAAACCTTCATCTGTACCCTACCTCAAAGATCTTACAAA
CAGCTCAAACCAactgtttttaggcttttaacCGAAACCTGGTTAACGGA
CAATCTCAAAAAAGGAGAACTTGAGAttgaaaattacaattttttaaaga
aaaacagagACAGAGTAAAATCGAAATATGGCAGAGCAAGCAGAGGCGTT
GCATTTTATGTGCATAATGACATTGCACTATTCTTCGAGCCCATTTTGGA
ATTCTCGAACGGAGTAAATGAAGCATtgatgcttttatcaaaaaaattta
atattcttCTGTGTTATCTACAGACAACCCCACAATCCACAAACCTGAAG
CACCTGAATTACAAGAACTCCTTTCTGCAATGATAGCAAAAATTGATAGT
Attaccatgaaggtaataaagatacagatggagagaaaacgtctcggtaa
tgacctaaatggtcgttgaaatcttttataaatctattcaaagcggcctt
tctttgatgtaccatcattggaagcaaaaaacatcaatttataactttaa
aaGAACAGAAATAGGCCGGTacaatgattttgaaaaatttaattttgcga
gaaatcttagttaaaatgcgattcgaaatagtttcaactgatttaaggat
aaaagaatatattaattttataaggatatatttttgggctggcattttgt
gaacattgagagtcgcatcacattatcattgaaagtttcttatcttgaaa
tcttcacgtctaagtggacagcggttttcatactctgacaaaatgatcga
tacaaggttcttaattgtaacacgtaattctttttcaaatctatcaatgg
ctttatgggcagcttcccctagaagtttagagtattgtgcttattatgtg
aagtttttttcaatttttcatgacaaggctattatatTTCAATATACTTG
TTAAAAATGTAATGTCTTTTCATTCATCTTTAATATTCTCACGAGTATAC
cgaaaattaatcatcttattcccaaagcaaccaaacagctgtttgcttcc
gatgataaatcagaatagaaaaaaggcattgactctccatctatctttat
taccttcatggtatTACTGATTGTACACCTGACATATACATCCTTGGGGA
TTTTAACATACCACACGCGCCTCTTAATGACGAGACTTCAACCCCAACAC
GAAATTGCAATAAACAGCTTCTGGACGtttttttgtgatgacgtcattat
tttcatatataatttaagtgtcactttgtcaatatttggAGTCGATGATT
TGTCcttgaaattttctaaatagcatgttttgtATACAACATTTCCTTAT
TGCaaataatattttattaaaCGTTTTTATAAATTGCATGTAACAGTTAC
AGTTACAGTACAGTTTTGACCTGTGTCAATAGCCTGTGACCTGTCGACTC
GAATTAGCCGACTTTTTTTGCAGAGGTAAATGTCTTTTCAAATTCTTGAA
AGGGTCAAATGCTtagaaaaattcttgaaatactttaggtgtacaaactt
tcgcaatCAGAAACTTTTGCTAggttcaaaaatatttactttcatgaatt
tgaggaaaaaatatttttcgcaagCACAAACTTTTTcgaatcgttggata
aaaatgagaaattttcaacaaaattgttCCTTGAATccgataaaaaattt
tctttgagttTGAAAAGGTGTTGAATACTAAGTTTATCCAATTCAAGAAG
TATGTTTGTCCCTCTGTCTAAGGCGGTTTGTGCGcaaatcttttttatta
tatattgatttgcaaaagtttatgttctcaataaagatttttttgtcaaa
tttgcaAAAAGTAAGTGTTGTAAATTTCGCATTTTTTGTATTGCAAAGTG
CAAATTTGCACGCCTACAGTCTAATATTtacatattttcttttctttgtg
cTACTGATGTCAGGCCAGTTCTCATCTCTCTGTGCATATTCATTTATCAG
CCATTCTACCTTAAAATTTATCTGTAGatatttttgcaatattttcaaaa
aatgattcaatttttgcAGGACTTATTTTTGCAGGCACAGGAACTTGTAA
GTTTCCCAGGGGTAAAATTTAAGGAATCAGCCGCTTTTATTGGCCATTCT
ATTATAGAATTTACGAGGCAGACATCAAAGTTTCTAGTGTCTGGAAAATA
TATCTAGCATAACAGTGTGGGgttacatttttattaaggtGTCCAAGAAT
GCTTTAACTTTATATTTCCTAAAtcttattattttcaatttcttctaaAA
ATTTGTGTCTTTGTGTCTTATCTTTagataaataaatcaaaacagaaTGG
CTTTAGAAATCAAGAAAGTTTTAATCAGTGATAAAGTGGATTCTAGTTGT
CAAACAGTGCTTGAAGAAAACAGCATTGAAGTGGATTACAAACCTGGCCT
GTCAAAAGATGAACTCAAAGCTATCATCAAGGTGCCACATTCATTTCCTG
GACAATCCAATGATTGATGAAAATCTTTATGATGGCCTTCTTGAATACCA
ATACTTGGATTTCTGCAACTATCCACAAAAAGATAGATGATAGATAAAGA
TGTgagatttttctaattttggaaAACAATTCAGAGGATAATATTAtggt
tttaatattttatttttaggattACGACGGTCTTATAGTCAGATCAGCCA
CCAAAGTGACGCAAGATGTTTATGATTGTGCTGAAAGGTTGAAGATTATT
GGCAGAGCTGGTACTGGTGTGGATAATATTGACCAAATTTCTGCGTCAGC
AAAAGGAGTTCTTGTCATGAAGTAAGAAGCTGTAAAGATTTCTTAATCAA
TTACTTGCATGGTCTTTTAGAAAAGggattttatttaaattttagattta
ttagtttggagtgaagaaaaaaagcaaaattgattttaaataaCAAACGG
TTTTCTTTTTTCAGCACACCGGGTGGAAATACACTGAGTGCAGCAGAACA
CACCTGCGCCATGATCTCTGCTCTTGCAAGGTATACCTTATTTGTCAAAT
ATTTTAGCTCATTTTGTTTAACTgaccaaaaaacgaaaaaaacgaAAGCA
GCATGGAGCACAGAGAAAGTCTAAGTCTGATCCATACATACCATACCTAC
CTGCCTACACATTACGAAGTTGACTGACCAGGTATGAACGATAGAAAAAT
AAGATCATTTCCTTTTTACATTATCTTTTTTACATTAATTACCTTGAGTT
TAAATCATTGAGAGGGATTAACTAAAGTCTTTACATCTGTTGAGAAGGCT
gtttttcgaattcaaatcctACTGAGAAAGTCACGACCTGATCGCAACAC
TGTTCTAGAGAGAAACTCAATAATCGTGCTTATCGCTATCTCTTATCTTC
TTTCAGACACATTGGTCAAGGTTATGCTTCAATGTTGGAAGGAAAATGGG
AGAGATCTAAGGTAATCTATACAGAAGCGTGAAAATTAGTATATGTTATC
ACATGATAATGAGTGAAATTCGGGAATAATTGTACGAGTGATTGCACGag
ggatttttttgtttttaattttctgagtccttttcttatattgttgttca
tagtttttctttctcacaaaaaaaACGTTCGCGGcatcgaagagtgtgat
taacggttaattgctctctttgaaggcacgccaaatgagaaaaaatacaG
TCGGTAGTCCATCGTGCGATTATACATGATAAACATCGACAACGACACTT
TAGGATTTACGCTCGCGTTTACTTTGGCTGAATGACGTCAAATTTCGCGA
AGGTAACCCGGAACCCCTTTCAAGGAGCTTTAAGGACAAGGGCTTTATTG
TACACCATCCTATTTTTGTAGAATTCATATACCAGCTCTTTTAATCGTTA
TTTTGATAGTTTATGGGATGTGAACTCGGTGGAAAAACACTGGCTATTAT
CGGGCTTGGTCGGATCGGACGTGAAGTGGCTTCAAGAATGCAATCTTACG
GAATGAAGGTCAAAATTATGAATTAAACTCTCGCTAATTCCAACTCGAAC
AGgattataaagttttttactGGCTTTTCCCCATGACAGAAGTtgagaat
gatagaatgatttgaataaaagaagttcgaattagcgagggTCAACTGTA
TCGTGCATTCTGTATCAAATTTCCCATAATGCTTAACCTTAATAATGTTT
TAGTGAAATAGTTACCTTTTTAACTAAATGAACTGTCCCTTTCCTGTCCT
TTGAACGGACATTCTTTTTCTTACAAATCTAAAGCAGCATCTCTTATCTT
TTCTCCAAACCTAAAACCATCGAATTTATTTCAACCTTTCTCGATTTGGT
CGTTCACAGACGGTGGGTTACGATCCTTTGGTTTCACCAGAAGAAGCTGC
TACATTTGGTGTGGAGtatttacaattaaaaaatatttggcCCATCGCTG
ACTTTGTCACAGTTCATGTACCTCTCATCAAGCCAACACGTGGTATGTTC
AACTTCCTTCCAATGAAAGGTTTCCTTCTTGTTGCCTGCATCTGTGTGAG
TGATATCGTtggagattttcaaaaaatctgaatttttagATCTTGCTTTT
AGTTAAACAAAATGCTAGGGGACTACAAAATGGTAGTGACGTTTATCTCT
GAATGTACAGTTGATTctcaataactcgaacctcttaatctcgaatgtct
ccttaactcgaacaagttttatagtcccttcagttaacaatgtcaTTTAA
ACTTTATTCGAAAAGATTTGCGTTCCCTGTTTGTGTTTCAGCTATGGAGA
CtccaatttcaatttcatctttttctttCCATTTGAAGGGATGATCAACG
CATCGGTGTTCGAAGTTTGCAAACCCTCCATGAAAGTGATCAATGTTGCA
CGTGGTGGAATCATTGATGAAAAGGATCTCCTCAACGCATTGAATGCTGG
GAAATGTGGGGGAGCAGCACTTGATGTCTTCGAAACNTCAACGCATTGAA
TGCTGGCAAATGTGGGGGAGCAGCACTTGATGTCTTCGAAACTGAACCAC
CTAAAGGTTGATTTAAATTCCTGATCATTGTTATGTGCGGTGAAGATCTT
CTACAAAGAAATCTACACAATTTAGAAAGTGCTCATTTAAGTCACTCCTC
AAATTCGGCTATATATCAATAGAGTttcaatatgaaattttttacCATCT
TGTTTTCCATTTGGAAGATTAACCTAGGATCAAAGAAGGAATCTTCTGGC
tgagtttcatttttcatttgtttgtcCCCTAATGACATTCGtcgaaattt
agtttttttaactttttctcttCGCAGAGGGCAGTGTCAGCATGGAGTTA
GTGAAACATCCTAAGACCCTATGCACACCACATTTGGGAGCGAGTACGAC
AGAAGCACAGTTGCGCGTTGCTAAGGAGATTGCAGAACAATTTGTGGATG
CGGTCAATGGGAAACCCATGGTCGGCTTGGTGAGTGCTTCTTACTCGACT
CTTTTCAGGAACGATTTCTTTGGTAGGTCCCGAGTAATCTAGGACTTGTT
TTAATGGGCTCCGCGTCCTACTCGGCCATATAAAAGTGAAGATggttagt
ctgaatcgcagacctctatagatatacttcctataagaaacttttatcgc
tagaggatgagcagaagcttAGAAGATGGTCATCCCTAGTACTATAGCCT
ATATAGAAGACTGCTTCTGAAGGCCTTAgaatattgattgatttaaaGAA
CGagcatttgtttcatttgaacCTCGTTGACTTTATTGCCATCATGATTC
CCACGAATACTGTTCATTTTAATCGAATAGCAAAGAACCAATGACATCGA
TCTCTCGAAAGAATTTGAAACTCGCGTTTCTACAGGTTTAACCCCCTTGT
TTATCATTGACAAAAACCGCAATTCTACAATTTCAAAATACCCATTACAC
CAATCCGTTTATTTCAAGGTCAACGCACCAGCTTTATCGCAATTGGCCAA
CCCTTTGTACGCACCTTGGGTGGAACTAGCTCAGAAACTCGGCTCCCTAG
CCTCCAATCTCAGTGATTCAGCAAATTTGACTTTGCATTTGGATGGTGAT
GAATTGAAACCAGCCACCAGGCTATTGAACACTGCGCTTTGTTTTGGACT
TGCTAAAGCTAAAGGATTGGACTGCAATATGATCAGTGCTGTCAGTCTTC
TCAAAGAGAAAAACATAGTGGTAAGTCTATACTACATTCACTATGTCTGC
GATTTGTCACTTGACAAGAATTATCTACCGCGgtacggcaaaaaaaaaac
gtcACCAATTTTAATTGTAGCGCTGCCAGATTATCGAAATGACCGGGAAA
AACTATTAAAGCATATTCAAAAGTTTCCTGGAAGTTTTGACTTAAAAGAG
CTATTTTTCTAAAAGATATGcctttatatatattttaggAATCGAGTACG
GAATGTTTTATCTCAGACAAAATTATGCCAAAATATCCCTCGTAGAATGT
CTAAATAATACCCGATTACTAAAAGATTTTAGACAACACTACGATAAAGT
TTGTCAATAAAAATCTAGCTTTTGCTTTATTGATcaatgtaaaatttgaa
aatgctcTTGGCCTGAACCATAAAGCTCACCTCAAAAACAGGGGTCGTGA
TCATACCCTTCGTAAATGTGACCTTGATGATCATTTCAACATCTTCTTCA
CTTTAGGTTGTCAACTCACCAACACCCAAAGATCTCGCTTACTCTGCTCT
CTCTGTTTCAACAAGCGAAAACTCATGGCTCGTCACCGGCTTTCTGAGCA
GAGGAAGACCCTGCATTGGAACTCTCCAAAATACTGAGCTCGCTAACCCA
GTCGTTTTAGAGAGCGGTTTGGTCTATGCAGTTTCCGACTCATCAGAGAA
AGAACTTCTGCTGACTTCAGCAGAAATGGGCGTTTCTTCAGTGAGTCTAT
CACGGAATGGAAACCGGGTGGTTTTTGTCGCAAGTGTCGCAGAGAAACCG
GCCAACGAACTATTCAAATTCATACAATTCTAGggagtatttttgaaatt
ttaggttagataggaaatatttttcaaaagatatggCGCATATGTCTGAA
GTATAGGGAGCTTCTTcgtcatttcaaatttttgtggtttgtaaattttc
tttacatatttgaatttttttattttattctgtcAACTAGGATTTTTCCC
GATATTTATAAAACTGTAGCTCATAACCGAATCAAAAATTACGATATTAA
TATTCAAGTATTCCTTTGTTCCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044065XLOC_044065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070844-exon-scaffold_58-1491911889:827377..827705TCONS_00070844-exon-scaffold_58-1491911889:827377..827705Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:827377..827705TCONS_00070844-exon-scaffold_58-1510915933:827377..827705Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:827377..827705TCONS_00070844-exon-scaffold_58-1575043694:827377..827705Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:828029..831957TCONS_00070844-exon-scaffold_58-1491911889:828029..831957Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:828029..831957TCONS_00070844-exon-scaffold_58-1510915933:828029..831957Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:828029..831957TCONS_00070844-exon-scaffold_58-1575043694:828029..831957Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:832146..832297TCONS_00070844-exon-scaffold_58-1491911889:832146..832297Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:832146..832297TCONS_00070844-exon-scaffold_58-1510915933:832146..832297Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:832146..832297TCONS_00070844-exon-scaffold_58-1575043694:832146..832297Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:832441..832506TCONS_00070844-exon-scaffold_58-1491911889:832441..832506Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:832441..832506TCONS_00070844-exon-scaffold_58-1510915933:832441..832506Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:832441..832506TCONS_00070844-exon-scaffold_58-1575043694:832441..832506Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:832883..832937TCONS_00070844-exon-scaffold_58-1491911889:832883..832937Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:832883..832937TCONS_00070844-exon-scaffold_58-1510915933:832883..832937Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:832883..832937TCONS_00070844-exon-scaffold_58-1575043694:832883..832937Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:833386..833484TCONS_00070844-exon-scaffold_58-1491911889:833386..833484Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:833386..833484TCONS_00070844-exon-scaffold_58-1510915933:833386..833484Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:833386..833484TCONS_00070844-exon-scaffold_58-1575043694:833386..833484Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:833836..833968TCONS_00070844-exon-scaffold_58-1491911889:833836..833968Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:833836..833968TCONS_00070844-exon-scaffold_58-1510915933:833836..833968Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:833836..833968TCONS_00070844-exon-scaffold_58-1575043694:833836..833968Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:834315..834451TCONS_00070844-exon-scaffold_58-1491911889:834315..834451Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:834315..834451TCONS_00070844-exon-scaffold_58-1510915933:834315..834451Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:834315..834451TCONS_00070844-exon-scaffold_58-1575043694:834315..834451Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:834508..834532TCONS_00070844-exon-scaffold_58-1491911889:834508..834532Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:834508..834532TCONS_00070844-exon-scaffold_58-1510915933:834508..834532Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:834508..834532TCONS_00070844-exon-scaffold_58-1575043694:834508..834532Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:834804..834955TCONS_00070844-exon-scaffold_58-1491911889:834804..834955Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:834804..834955TCONS_00070844-exon-scaffold_58-1510915933:834804..834955Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:834804..834955TCONS_00070844-exon-scaffold_58-1575043694:834804..834955Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:835445..835696TCONS_00070844-exon-scaffold_58-1491911889:835445..835696Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:835445..835696TCONS_00070844-exon-scaffold_58-1510915933:835445..835696Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:835445..835696TCONS_00070844-exon-scaffold_58-1575043694:835445..835696Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1491911889:836183..836751TCONS_00070844-exon-scaffold_58-1491911889:836183..836751Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1510915933:836183..836751TCONS_00070844-exon-scaffold_58-1510915933:836183..836751Clytia hemisphaericaexon
TCONS_00070844-exon-scaffold_58-1575043694:836183..836751TCONS_00070844-exon-scaffold_58-1575043694:836183..836751Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:827377..836751 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.208203	0.0812122	0.15853	0.092253	1.06694	0.340027	0.0536384	0.250596	0.210538	0.565035	0.16875	0.775092	0	0	0.0709346	0.0507491	0	0.0640798	0	0	0.322061	0.82478	0.190977	0.0868129	0	0	1.37034	0.914039	0.506026	0.0938452
Blast
[Close]
BLAST of TCONS_00070844 vs. Swiss-Prot (Human)
Match: SERA (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 422.935 bits (1086), Expect = 9.392e-131
Identity = 219/409 (53.55%), Postives = 289/409 (70.66%), Query Frame = 2 
Query: 4136 IKKVLISDKVDSSCQTVLEENSIEVDYKPGLSKDELKAIIKDYDGLIVRSATKVTQDVYDCAERLKIIGRAGTGVDNIDQISASAKGVLVMNTPGGNTLSAAEHTCAMISALARHIGQGYASMLEGKWERSKFMGCELGGKTLAIIGLGRIGREVASRMQSYGMKTVGYDPLVSPEEAATFGVEYLQLKNIWPIADFVTVHVPLIKPTRGMINASVFEVCKPSMKVINVARGGIIDEKDLLNALNAGKCGGAALDVFETEPPKEGSVSMELVKHPKTLCTPHLGASTTEAQLRVAKEIAEQFVDAVNGKPMVGLVNAPALSQLANPLYAPWVELAQKXXXXXXXXXXXXXXTLHL--DGDELKPATRLLNTALCFGLAK--AKGLDCNMISAVSLLKEKNIVVVNSPTP 5350
            ++KVLISD +D  C+ +L++  ++V  K  LSK+EL A ++D +GLIVRSATKVT DV + AE+L+++GRAGTGVDN+D  +A+ KG+LVMNTP GN+LSAAE TC MI  LAR I Q  ASM +GKWER KFMG EL GKTL I+GLGRIGREVA+RMQS+GMKT+GYDP++SPE +A+FGV+ L L+ IWP+ DF+TVH PL+  T G++N + F  CK  ++V+N ARGGI+DE  LL AL +G+C GAALDVF  EPP++ +    LV H   +  PHLGAST EAQ R  +EIA QFVD V GK + G+VNA AL+   +P   PW+ LA+ LG+L    + S   T+ +   G  LK A   L+ A+  GL K  +K  D N+++A  L+KE  + V  S +P
Sbjct:    6 LRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA----LVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVTTSHSP 410
The following BLAST results are available for this feature:
BLAST of TCONS_00070844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SERA9.392e-13153.55D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
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