TCONS_00070840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070840
Unique NameTCONS_00070840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070840 ID=TCONS_00070840|Name=TCONS_00070840|organism=Clytia hemisphaerica|type=transcript|length=2886bp
AAGTTCGAAAATTATTCATAGAAAGTTCGATAAAGTAGCAATGCAAACGA
AAGACAGAATGTTTCAAGAAAGGCAGAAGTACAAACTATCAGcaaCATCG
ATTACGATTCGTTTCTCCTTGAAATGGAGCAATCTTATGTGAAATTGAAG
ATCgccgaaaaagaagaaaaattacgcAGAGAcagagaaaagaaaacaat
gaaGCCAGTCAACGGGACCGCTCAAAAAGATGGGAAATATTTCCTTGTCA
GATTAGAAATGGAGGTAGAAAAAATCAACAGCCTAATAAACTCAACTGAG
AAAGATTCGAGGCTGGCACAGCTTCCTGATGAAGCATCTGGTAAAATTCG
GAATGCCGTTGGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGT
TCCGAGAATTATGCAGGGATAATATTGAAAATGACCCTGACAAGAAAGAA
ACGAAGTCTTCAGACCTTCAAGGTTATTGGGACATGATGTATATACAAAT
CGAAGATGTTCACGCGCTCTTCAACGATATCGACAAATTGCGCGCCAACA
ATTGGCTTGTTACGGAAGATGCAACGGACGGATATCTCAAACCTCAGGAT
GACACGAAGAAAGGAAGCTCCTCTACCCCAAAAGGCAAACGCAAATCCAC
CGGAAAATCACCGAGGACAAAAACAAAGACGATAGATGACGAAAAAGTCA
AACGAGAGGCGCGCTCTAGGTTAGTGGCCGCGCGGAAACAAGCCAAATTA
CGCGCACAGCAAGAAGCGACCGCTAGCAATGGAGGTTCACCGGATGACGG
TTCACCAGATGAAGGTTCACCGGATTCGTCTATAAACGGCTCACTGAATG
GATCATGGACAGctgataaaaatgaagaagcagCAAATTCTTCTTTGAAC
ACTTCTCTTAATTCTTCCTCCAATTCTTCTTCCGTGGAACTTTTGAGTAA
TGGAGTTGATTCGCTTGACATCGCTGCTGAGTCGAGGCCTGTTCTAAAGC
CTAACATTGAGGTCAATAGCGTTGCATAGCCATATTGTTTTGACTCAAAC
CCTGTTGTTGACGTAATTATGAAATGATGACCCATattgtttatttaatt
ttgatAGTCCCTCACATAAAAAAATTGCATTCaaattaaaaggaaaaatt
ttttaatattattttcggtgttttttttttttaataaagttttttCGTTG
TTTTATGTTTACCTCACATACATAACGTTATTTTAATGAATCTCAGTATT
TTTTAAATTACTATTATTATTGTTAGTATTTTAAGCAATTATCGGACGGT
GTCGGACAAAGGTACAGTAGAATGGACCTTTGACTTCGTTTGAGTAAGGT
ATCGCAATGGTTGGCTTCCATACTACCTCGTATCATTAGTAATTCTTTGA
TTAACTTGACTGATGAGTTATCAATCGATTGCTCCGGTATGGATGAgcta
tttccaaattttggacATCGACATTTTCAGCCTTTAACCTTGTCACAAAA
TATTCTTCTTGTTAGCATCTTGggcttttgtttacttttttccagattgt
ttttctgtttgaccagtttgacttttcacttttctcTTGAGTATCCCGTC
AAAGATTTGCCCACAAACTTAAACAGTCTGttatttaaagaatattttgg
gacgcaattttttaagtttggtcaagatattttcattgtttttacttCTC
TATGTCTTATTGTTAATCTTTATTGTATATACCTTTTTATTACAATGATG
TTTTAAGTTTTTATACAAGTCTAATCATCctctattttttgttttgttga
tgtGAATCTGTCGTGAAGGATGCGTTTTCGAGAGAAGCGGAATCTCGGTT
TGCATTTTGAAAAGCTTGAACcacaaagatttttctttttgacatgCAGT
GtgtaaattgaaagaaatttagTAAACTTTCCTAAtctaaaaaccatttt
tttgaaGCGACATAAGATTTAcgacatttttttatatatcatgTTCTCTG
TGTATAGTCTGGAATTGTTGATACCGTCAAATAAANGGTTGGCTTCCATA
CTACCTCGTATCATTAGTAATTCTTTGATTAACTTGACTGATGAGTTATC
AATCGATTGCTCCGGTATGGATGAgctatttccaaattttggacATCGAC
ATTTTCAGCCTTTAACCTTGTCACAAAATATTCTTCTTGTTAGTATCTTG
GGCTtttgggtcaagctggagtttttacaagttctttgactCTGTTGGTc
attaaatgttgagacaaacgattttattactttctaaagaacgtgtcact
cctattgtttaaaaataaccaatcagttaagcatcttgtaaaaactccag
cccatcccgggcttttgtttacttttttccagattgtttttctgtttgac
ttttcacttttctcTTGAGTATCCCATCAAAGAGTTGCCCAGAAAAACAA
ACTTAAACagtctcttatttaaaaaaatatattttgggacgcaatttttg
aagtttggtcaagatattttcattgtttttaccTCTATGTTTTATTGTTG
ATCTTTATTGTATATACCTTTTTATTACAATGATGTTTTAAGTTTTTATA
CAAGTCTAATTTCTCTATTTTTCGTTTTGTTGATGTAAATCTGTCGTGAA
GGATGTGTTTTCGAGAGAGGCGGAATCTCAGTTTGCATTATGAAAAGCTT
GAACcacaaagatttttctttttgacatgCACTGTAAATTGAAACAAATT
TAGTAAACTTTCCTAAtctaaaaaccatttttttgaaaCGACATAAGATT
TAcgacatttttttatatatcatgTTCTCTGTGTATAGTCTGGAATTGTT
GATACcgtcaaataaaataaagaaaatttcaatcaa
Run BLAST on NCBI

transcript from alignment at scaffold_58:821824..826752+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070840 ID=TCONS_00070840|Name=TCONS_00070840|organism=Clytia hemisphaerica|type=transcript|length=4929bp|location=Sequence derived from alignment at scaffold_58:821824..826752+ (Clytia hemisphaerica)
AAGTTCGAAAATTATTCATAGAAAGTTCGATAAAGTAGCAATGCAAACGA
AAGACAGAATGTTTCAAGAAAGGCAGAAGTACAAACTATCAGGTTggatt
ataaagtttttaagtTCAATAGAAATTTAGTGTAAGTCGACCTTTCCTAA
TCTGTTTCAAGTCAAATATCAGTTTTCGAGCTGTTTTGTTTAACCTTGCA
AATTACTGATCAACCCTTTGTAAGAGTTTGTATCTGAATAAACGTATTTT
ATAAActcgtttgtttttttcttttagcaaCATCGATTACGATTCGTTTC
TCCTTGAAATGGAGCAATCTTATGTGAAATTGAAGATCgccgaaaaagaa
gaaaaattacgcAGAGAcagagaaaagaaaacaatgaaGCCAGTCAACGG
GACCGCTCAAAAAGATGGGAAATATTTCCTTGTCAGATTAGAAATGGAGG
TAGAAAAAATCAACAGCCTAATAAACTCAACTGAGAAAGATTCGAGGCTG
GCACAGCTTCCTGATGAAGGTTTGTaattctcttttattttttttgcaag
cATCATTATGATTTTGTTTGATTAGTAATGACTTTTAAAACATGAGCAAT
CACATTTCATTTTATGAtgattaatattttcttttcctaAATAAACGGTT
AgagatttttctctttttcatgtCAAACTTTCACCTCTGTGGCTCGCGAG
CTTCACAAATCTTGCTTTTGATTTAACAAAGTTGTTAATATTTGATGAAC
AACGAACAGTGAGCTATTGGAAGTTTGAAATAACATGTAAACTTGTTTTC
ATTCTCCAATAGTGATTCattcagcttttcaaaaataggTTTTGATTGAT
AAATAACCAGAATAGATTCATCATATAAATCATTTACATCCAGGTGCCCT
TTTGGTCTGCTGCTCACATTTTCGAATCAAAGCAATAGAATCTATTTTTC
GATTCATACAGATGTTTCTATACTGACAGGTGTCTGATATTAATCACCGT
TAGAAGCATGTTGCTCTTTTAGCTTATTTGGTTTTCATTataatttcgat
attttttgaGGTCACTTAAAAATATTTCCAGTAAAAAATCAACCCTTCTT
TCATGCCTGTGTGAAAATTGTATTCAAGACATTTCCTTATAAAGCCTCGT
CGTTGCTAAATTGTCCGGTATGTATATTGAAATCTGCATTTCCGCTGCTT
AAAATGGTAATTGATCCCACTATAATCAGTTACTAATTAATTCAATTTGA
ATCAGGGTGATTACACTATAATTACAACAATTTATTGATCCaattagaat
aactttttatcccCCTATCGTAAAGCATGCTTTTAGTCTCATTATCGAAA
AGTTATTTTAAGTGACCATTCTGACTCTTTTTAGCATCTGGTAAAATTCG
GAATGCCGTTGGAAAAGCACATTTACTACTCAACAAACGATTCAAACAGT
TCCGAGAATTATGCAGGGATAATATTGTAAGNCGACAGGTGTCTGATATG
TAATCACCGTTAGAAGCATGTTGCTCTTTTAGCTTATTTGGTTTTCATTa
taatttcgatattttttaagGTCACTTAAAAATATTTCCAGTAAAAAATC
AACCCTTCTTTTATGCCTGTGTGAAAATTGTATTCAAGACATTTCCTTAT
AAAGCCTCGTCGTTGCTAAATTATCCGGTATGTATATTGAAATCTGCATT
TCCGCTGCTTAAAATGGTAATTGATCCCACTATAATCAGTTACTAATTAA
TTCAATTTGAATCAGGGGGATTACACTATAATTACAACAATTTATTGATC
CaattagaataactttttatcccCCTATCGTAAAGCATGCTTTTAGTCTC
ATTATCGAAAAGTTATTTTAAGTGACCATTCTGACTCTTTTTAGCATCTG
GTAAAATTCGGAATGCCGTTGGAAAAGCACATTTACTACTCAACAAACGA
TTCAAACAGTTCCGAGAATTATGCAGGGATAATATTGTAAGTCTTATATA
GTTCACGATGATTTGATTTTAGGCCTCTTTGAAAATAAGGCTCTCGGTAG
TTAGGtcatttttgaattaaggcaGAGAATTCTCTAATCTATGTATGAAA
CATCAAATTCTTCAATGTCTTTTTCAGGAAAATGACCCTGACAAGAAAGA
AACGAAGTCTTCAGACCTTCAAGGTTATTGGGACATGATGTATATACAAA
TCGAAGATGTTCACGCGCTCTTCAACGATATCGACAAATTGCGCGCCAAC
AATTGGCTTGTTACGGAAGATGCAACGGACGGATATCTCAAACCTCAGGT
GAGAATGAAATCTTTCTGTTTTGATTTCTTGGTTCTCATTTCTTGTTTTT
TCACATCTAACAACAAGCAATTTCTTAGAGCTTTAGTTATTTCTTcttgt
ttacaaattttcttcTCAATTGTTCTTTTAGAATTATTTAGGAAGCTTTT
TTGACAAAGTTTACACAAGAAAACAAATGTTAAAATCTACTTAGATATGA
CAATCAGCTGACAATGAAACCGAGCCCTCGTTGAACCTTTTTTCAATCTT
AGATGAAATAAACACGTTTGTGTTGTCTCAACAAACAGTTGATTCTAATC
GCATTACTAATCACATTTTCCCGATATTATTTTATCTCAGGATGACACGA
AGAAAGGAAGCTCCTCTACCCCAAAAGGCAAACGCAAATCCACCGGAAAA
TCACCGAGGACAAAAACAAAGACGATAGATGACGAAAAAGTCAAACGAGA
GGCGCGCTCTAGGTTAGTGGCCGCGCGGAAACAAGCCAAATTACGCGCAC
AGCAAGAAGCGACCGCTAGCAATGGAGGTTCACCGGATGACGGTTCACCA
GATGAAGGTTCACCGGATTCGTCTATAAACGGCTCACTGAATGGATCATG
GACAGctgataaaaatgaagaagcagCAAATTCTTCTTTGAACACTTCTC
TTAATTCTTCCTCCAATTCTTCTTCCGTGGAACTTTTGAGTAATGGAGTT
GATTCGCTTGACATCGCTGCTGAGTCGAGGCCTGTTCTAAAGCCTAACAT
TGAGGTCAATAGCGTTGCATAGCCATATTGTTTTGACTCAAACCCTGTTG
TTGACGTAATTATGAAATGATGACCCATattgtttatttaattttgatAG
TCCCTCACATAAAAAAATTGCATTCaaattaaaaggaaaaattttttaat
attattttcggtgttttttttttttaataaagttttttCGTTGTTTTATG
TTTACCTCACATACATAACGTTATTTTAATGAATCTCAGTATTTTTTAAA
TTACTATTATTATTGTTAGTATTTTAAGCAATTATCGGACGGTGTCGGAC
AAAGGTACAGTAGAATGGACCTTTGACTTCGTTTGAGTAAGGTATCGCAA
TGGTTGGCTTCCATACTACCTCGTATCATTAGTAATTCTTTGATTAACTT
GACTGATGAGTTATCAATCGATTGCTCCGGTATGGATGAgctatttccaa
attttggacATCGACATTTTCAGCCTTTAACCTTGTCACAAAATATTCTT
CTTGTTAGCATCTTGggcttttgtttacttttttccagattgtttttctg
tttgaccagtttgacttttcacttttctcTTGAGTATCCCGTCAAAGATT
TGCCCACAAACTTAAACAGTCTGttatttaaagaatattttgggacgcaa
ttttttaagtttggtcaagatattttcattgtttttacttCTCTATGTCT
TATTGTTAATCTTTATTGTATATACCTTTTTATTACAATGATGTTTTAAG
TTTTTATACAAGTCTAATCATCctctattttttgttttgttgatgtGAAT
CTGTCGTGAAGGATGCGTTTTCGAGAGAAGCGGAATCTCGGTTTGCATTT
TGAAAAGCTTGAACcacaaagatttttctttttgacatgCAGTGtgtaaa
ttgaaagaaatttagTAAACTTTCCTAAtctaaaaaccatttttttgaaG
CGACATAAGATTTAcgacatttttttatatatcatgTTCTCTGTGTATAG
TCTGGAATTGTTGATACCGTCAAATAAANGGTTGGCTTCCATACTACCTC
GTATCATTAGTAATTCTTTGATTAACTTGACTGATGAGTTATCAATCGAT
TGCTCCGGTATGGATGAgctatttccaaattttggacATCGACATTTTCA
GCCTTTAACCTTGTCACAAAATATTCTTCTTGTTAGTATCTTGGGCTttt
gggtcaagctggagtttttacaagttctttgactCTGTTGGTcattaaat
gttgagacaaacgattttattactttctaaagaacgtgtcactcctattg
tttaaaaataaccaatcagttaagcatcttgtaaaaactccagcccatcc
cgggcttttgtttacttttttccagattgtttttctgtttgacttttcac
ttttctcTTGAGTATCCCATCAAAGAGTTGCCCAGAAAAACAAACTTAAA
Cagtctcttatttaaaaaaatatattttgggacgcaatttttgaagtttg
gtcaagatattttcattgtttttaccTCTATGTTTTATTGTTGATCTTTA
TTGTATATACCTTTTTATTACAATGATGTTTTAAGTTTTTATACAAGTCT
AATTTCTCTATTTTTCGTTTTGTTGATGTAAATCTGTCGTGAAGGATGTG
TTTTCGAGAGAGGCGGAATCTCAGTTTGCATTATGAAAAGCTTGAACcac
aaagatttttctttttgacatgCACTGTAAATTGAAACAAATTTAGTAAA
CTTTCCTAAtctaaaaaccatttttttgaaaCGACATAAGATTTAcgaca
tttttttatatatcatgTTCTCTGTGTATAGTCTGGAATTGTTGATACcg
tcaaataaaataaagaaaatttcaatcaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044064XLOC_044064Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070840-exon-scaffold_58-1491911889:821824..821915TCONS_00070840-exon-scaffold_58-1491911889:821824..821915Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1510915933:821824..821915TCONS_00070840-exon-scaffold_58-1510915933:821824..821915Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1575043694:821824..821915TCONS_00070840-exon-scaffold_58-1575043694:821824..821915Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1491911889:822101..822342TCONS_00070840-exon-scaffold_58-1491911889:822101..822342Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1510915933:822101..822342TCONS_00070840-exon-scaffold_58-1510915933:822101..822342Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1575043694:822101..822342TCONS_00070840-exon-scaffold_58-1575043694:822101..822342Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1491911889:823718..823809TCONS_00070840-exon-scaffold_58-1491911889:823718..823809Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1510915933:823718..823809TCONS_00070840-exon-scaffold_58-1510915933:823718..823809Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1575043694:823718..823809TCONS_00070840-exon-scaffold_58-1575043694:823718..823809Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1491911889:823951..824121TCONS_00070840-exon-scaffold_58-1491911889:823951..824121Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1510915933:823951..824121TCONS_00070840-exon-scaffold_58-1510915933:823951..824121Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1575043694:823951..824121TCONS_00070840-exon-scaffold_58-1575043694:823951..824121Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1491911889:824464..826752TCONS_00070840-exon-scaffold_58-1491911889:824464..826752Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1510915933:824464..826752TCONS_00070840-exon-scaffold_58-1510915933:824464..826752Clytia hemisphaericaexon
TCONS_00070840-exon-scaffold_58-1575043694:824464..826752TCONS_00070840-exon-scaffold_58-1575043694:824464..826752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:821824..826752 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.737829	0	0.00326778	0	4.51541e-09	1.28932e-09	7.72411e-08	4.99731e-10	1.70966	0.346769	1.17722	0.101572	0.730443	0	0	6.66851e-09	0.145963	1.06373e-05	0.759982	3.74608e-06	1.17673	6.78557e-07	0	0	5.57575	0.739436	0.904832	0	0.461462	0.137336
Blast
[Close]
BLAST of TCONS_00070840 vs. Swiss-Prot (Human)
Match: DLGP1 (Disks large-associated protein 1 OS=Homo sapiens GN=DLGAP1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.187e-21
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 1 
Query:  220 AQKDGKYFLVRLEMEVEKINSLINSTEKDSRLAQLPDEASGKIRNAVGKAHLLLNKRFKQFRELCRDNIENDPDKKETKSSDLQGYWDMMYIQIEDVHALFNDIDKLRANNW 555
              +DG +FL  L+ E +++       E++ R   LP++  GKIR AVG A LL+ ++F QFRELC +N+  +   + T S DL G+WDM+ + IE++   F+++ +L+ANNW
Sbjct:  789 CHRDGHWFLKLLQAERDRMEGWCQQMEREERENNLPEDILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPRPT-SQDLAGFWDMLQLSIENISMKFDELHQLKANNW 899
The following BLAST results are available for this feature:
BLAST of TCONS_00070840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DLGP14.187e-2139.29Disks large-associated protein 1 OS=Homo sapiens G... [more]
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