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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070821 ID=TCONS_00070821|Name=TCONS_00070821|organism=Clytia hemisphaerica|type=transcript|length=3405bpRun BLAST on NCBI protein sequence of TCONS_00070821-protein >TCONS_00070821-protein ID=TCONS_00070821-protein|Name=TCONS_00070821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp MDWFRNVPNVIRSQSAQSDHPNTSGRNSASSDSYNSGNEDNYSILNKPKYRun BLAST on NCBI transcript from alignment at scaffold_58:703914..710479+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070821 ID=TCONS_00070821|Name=TCONS_00070821|organism=Clytia hemisphaerica|type=transcript|length=6566bp|location=Sequence derived from alignment at scaffold_58:703914..710479+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_58:703914..710479+ >TCONS_00070821 ID=TCONS_00070821|Name=TCONS_00070821|organism=Clytia hemisphaerica|type=CDS|length=27810bp|location=Sequence derived from alignment at scaffold_58:703914..710479+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070821 vs. Swiss-Prot (Human)
Match: TRIM2 (Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 9.269e-48 Identity = 118/455 (25.93%), Postives = 215/455 (47.25%), Query Frame = 2
Query: 1832 GMSTQLTLLIKNQLGQEASVSKEDIEVEMKTPDLGIIMPEVREKTSSTFTLNFRTYSLGIHQLHIKLKAKHITGSPFSINVINSSEKQRRGXXXXXXXXXXXXXHLSTNYSKPLSLEINDHPSYKRSDSNEGAKNLYSNDRHSPNPPNNYYLDKNMNPTNGIDDPNSSYRNLLLNTAELSAKYVFSIGQRGTNFAEFHGVFGVASDHTNKRIIATDCHNNRIQVFNEEGKFLFAFGQKGNNDGEFQHPTGVGVGPNGEIVVCERLKGRIQVFNSEGHFQRRFILNQLKAST-LTVDIGGRIIIADYTSCCIYILDPILERWSKFGHFGQSEGELQYPGYVATDLKGNIFVSDMNSNKVQMYDSDSIFIRSFGHKGDGNGEFHHPTGIAIDIKGRLVVADRDNHRIQVIQTSGEYITKFGSKSEQGGDLSDLHGVTVLSNGNIAAADLKNNKIVVF 3193
G +T+ K++ G+ + E+ TPD + E+ + + T+ + G L ++L +HI GSPF + VI S++ S + EG K R +P + + K + P S Y + +F +G +G N EF + GVA+ TN +I+ D +N +Q+F+ +G+F FG +G + G+ Q PTGV V P+G+I++ + + +F+S+G F+ + +L ++VD G II+ D +CC++I P + ++FG G + + P + A + I ++D +++ V++++ + F+ FG G+GNG+F+ PTG+A+D G ++VAD N RIQV SG +++ + ++ L G+ + S+G++ AD N+ V+
Sbjct: 341 GQPMSVTITTKDKDGELCKTGNAYLTAELSTPDGSVADGEILDNKNGTYEFLYTVQKEGDFTLSLRLYDQHIRGSPFKLKVIRSADV---------------------------------------SPTTEGVK------RRVKSPGSGHVKQK------AVKRPASMYSTGKRKENPIEDDLIFRVGTKGRNKGEFTNLQGVAAS-TNGKILIADSNNQCVQIFSNDGQFKSRFGIRGRSPGQLQRPTGVAVHPSGDIIIADYDNKWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVFDGSGSFLSYINTSAD---PLYGPQGLALTSDGHVVVADSGNHCFKVY 740 The following BLAST results are available for this feature:
BLAST of TCONS_00070821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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