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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070818 ID=TCONS_00070818|Name=TCONS_00070818|organism=Clytia hemisphaerica|type=transcript|length=1543bp
CGCAATAAGGTTCCACTGCCACTTGTCTCgtcattagtttttttacaTCT
AGATAGAAAATagatgcaaaaatgaagacagtTTTACCAGTGTTAGCGGC
ATTATTGATGAATTTACATTCCATATACGCTTGCACCGACTTTCTCATTG
GTTGTCAAGATGGCGCCACTGTCCATGGGCGGACAATGGAATTCGAATTT
GCTTTCCCGTGGGTGGTTGGTGTTGTGCCTAAGGGATACAAAGAGACTGC
AATGTTGCCGGAAAACTGCCAAAACCATTCACCATTAACATGGTTTACTA
GATATAAAATTCTAGGAATCAAGTCAGCAGGTGATTTCTCAAATTCAAAT
CGATCAATTGTGGATGGTCAGAACGAGGCTGGCCTCTCTGCTGGAGCTTT
ATGGTTCGAAGGGTTTACAGAGTACCCTGATGCAGTACCTGAGCAACAAT
GTAGTCACTCCATACCGCATATGCAATTGATCAATTATTTGCTAGGTAAT
TTTGCCACCGTTGAGCAGGTCCGTACATCTTTCAAATACGATATCTTTCC
ATTTGTTTGGGGTCAATACGTCACGTACTGGCATGGAGACATCAAGATCA
ATAAATACCAGTTCCCTCTGCATTTGAGCTTGGCTGACCGAAGTGGACAT
TCTATTGTGATTGAATACACGAAAGGAAAAGGTCGCCaaatttttgataa
taaaattgGAATCTTAACCAATAGTCCTCCCTATGATTGGCATGTTCTGA
ATTTAGCCAACTCGATCANATCTTAACCAATAGTCCTCCCTATGATTGGC
ATGTTTTGAATTTAGCCAACTCGATCAATGTTCAAAATCAAGGTTATCCA
GCTAAACATGTGACAAAACAAGGGCGGAATTACACCATCGAAGCTTTCTG
GGATGGAACAGGATTGTTGGGATTACCAGGAGATTTCACACCAGCAAGTA
GATTCTTGAGGACTGCAGCAATGATTAGATTTTCCGAAGAAGCCAAAAAT
GCGAAAGATGGAGCATTAAAAGCATGGCATATTATCAACTCAGTTGACAT
CACAAAAGGAACAAGTGAAGACTACACAGTGTTTTCAGTGGTGAAAGATT
TGACCAATAACATCATGTACTTCAGAGCACATGACTACATTAGTATACGG
TCCATTCATTTGAACAAATTGAGTGGTGAAAGTGGGAAACAAATTCCTGT
TGAAGACACTTTTGAAAATAGTGTTAAGGATATTACCGACGATTTTGGAG
ATAATTGGTAGAATGCGGTGGTGTAAATATTGTGCAAATCTCAGTGTTGT
ACCGACCTCCCTTTGATGTTTCATACCAGCTTGTATAAGAAGTTGTTGCT
TGGAGCACAGTGTAGATATTTCCCTTGATTCGTTTGATTCGGTTGATCTA
TTTGATTGCTGAAACATAATCTTGTTGAAACATAAACatgaaaaaattct
aattttctgATATATCAGCTTTATATGCTATTTGATAAGAAATTCTCAAG
CTTTTCAGTGGAATATCAAAATAGAGACTTCCCATCagtccca Run BLAST on NCBI protein sequence of TCONS_00070818-protein >TCONS_00070818-protein ID=TCONS_00070818-protein|Name=TCONS_00070818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MKTVLPVLAALLMNLHSIYACTDFLIGCQDGATVHGRTMEFEFAFPWVVG
VVPKGYKETAMLPENCQNHSPLTWFTRYKILGIKSAGDFSNSNRSIVDGQ
NEAGLSAGALWFEGFTEYPDAVPEQQCSHSIPHMQLINYLLGNFATVEQV
RTSFKYDIFPFVWGQYVTYWHGDIKINKYQFPLHLSLADRSGHSIVIEYT
KGKGRQIFDNKIGILTNSPPYDWHVLNLANSIXS Run BLAST on NCBI transcript from alignment at scaffold_58:608370..610657+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070818 ID=TCONS_00070818|Name=TCONS_00070818|organism=Clytia hemisphaerica|type=transcript|length=2288bp|location=Sequence derived from alignment at scaffold_58:608370..610657+ (Clytia hemisphaerica)
CGCAATAAGGTTCCACTGCCACTTGTCTCgtcattagtttttttacaTCT
AGATAGAAAATagatgcaaaaatgaagacagtTTTACCAGTGTTAGCGGC
ATTATTGATGAATTTACATTCCATATACGCTTGCACCGACTTTCTCATTG
GTTGTCAAGATGGCGCCACTGTCCATGGGCGGACAATGGAATTCGAATTT
GCTTTCCCGTGGGTGGTTGGTGTTGTGCCTAAGGGATACAAAGAGACTGC
AATGTTGCCGGAAAACTGCCAAAACCATTCACCATTAACATGGTTTACTA
GATATAAAATTCTAGGAATCAAGTCAGCAGGTGATTTCTCAAATTCAAAT
CGATCAATTGTGGATGGTCAGAACGAGGCTGGCCTCTCTGCTGGAGCTTT
ATGGTTCGAAGGGTTTACAGAGTACCCTGATGCAGTACCTGAGCAACAAT
GTAGTCACTCCATACCGCATATGCAATTGATCAATTATTTGCTAGGTAAT
GTATATTCTTATTTCTACGTTCATAAGTTCTGCAATCTTGGCTTACTTAA
CAAGGATCCTTTTAtcattcagaaaaaaaacaccatGATTTTTCCAAATA
AGATCTCCATCATACAATACCTTAATGTTATTAAGGTATTTTTTCACTAA
GCACTAAATCATTTTAGacgaaaaacaaacaaacaagaatattttatgtc
acaaacttgtgaaaaaaaactCTTAGTACACTTTATGAAAAACAAGATAA
TATTATGATTAGATATTTGATTTTGTCAGTGATCTATGTAGGGTCAGGTC
ACAAACAAAAAAACtgttattttaaaattaaaattattttaaaatttcat
tacttgaaaaaaaagattattcacACTTTATAATTTCAGGTAATTTTGCC
ACCGTTGAGCAGGTCCGTACATCTTTCAAATACGATATCTTTCCATTTGT
TTGGGGTCAATACGTCACGTACTGGCATGGAGACATCAAGATCAATAAAT
ACCAGTTCCCTCTGCATTTGAGCTTGGCTGACCGAAGTGGACATTCTATT
GTGATTGAATACACGAAAGGAAAAGGTCGCCaaatttttgataataaaat
tgGAATCTTAACCAATAGTCCTCCCTATGATTGGCATGTTCTGAATTTAG
CCAACTCGATCANATCTTAACCAATAGTCCTCCCTATGATTGGCATGTTT
TGAATTTAGCCAACTCGATCAATGTTCAAAATCAAGGTTATCCAGCTAAA
CATGTGACAAAACAAGGGCGGAATTACACCATCGAAGCTTTCTGGGATGG
AACAGGATTGTTGGGATTACCAGGAGATTTCACACCAGCAAGTAGATTCT
TGAGGACTGCAGCAATGATTAGATTTTCCGAAGAAGCCAAAAATGCGAAA
GATGGAGCATTAAAAGCATGGCATATTATCAACTCAGTTGACATCACAAA
AGGTTTAACTTTCTTATgttattttcaaacatttctaACATAGACCTGCC
CAAGTACTACACGGTATTGCCCTCTAAAAAGAATGTTAAGTAGAGGTCTG
GCAGTCACGAAAATATTTCAATCATCATAAAGTGCATCCAATGCTCTCCC
AAGGAATTTCAAACCTATTACCATCATCTTAGCAGCAAAATAAGCTTTTT
CTTTGATGTTCTTGTTAAACTGAATTTTAATTTAGCTTGGTGTATGGAGG
TCGCCAACGCCGAAATACGGACGTTTTCTCTTCAGCATGCCTTTCAAAAG
GGCACCTATTAATTGATTGTAATACGTTgttgtgtaatttttcttttctc
caGGAACAAGTGAAGACTACACAGTGTTTTCAGTGGTGAAAGATTTGACC
AATAACATCATGTACTTCAGAGCACATGACTACATTAGTATACGGTCCAT
TCATTTGAACAAATTGAGTGGTGAAAGTGGGAAACAAATTCCTGTTGAAG
ACACTTTTGAAAATAGTGTTAAGGATATTACCGACGATTTTGGAGATAAT
TGGTAGAATGCGGTGGTGTAAATATTGTGCAAATCTCAGTGTTGTACCGA
CCTCCCTTTGATGTTTCATACCAGCTTGTATAAGAAGTTGTTGCTTGGAG
CACAGTGTAGATATTTCCCTTGATTCGTTTGATTCGGTTGATCTATTTGA
TTGCTGAAACATAATCTTGTTGAAACATAAACatgaaaaaattctaattt
tctgATATATCAGCTTTATATGCTATTTGATAAGAAATTCTCAAGCTTTT
CAGTGGAATATCAAAATAGAGACTTCCCATCagtccca Coding sequence (CDS) from alignment at scaffold_58:608370..610657+ >TCONS_00070818 ID=TCONS_00070818|Name=TCONS_00070818|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_58:608370..610657+ (Clytia hemisphaerica)
atgaagacagtTTTACCAGTGTTAGCGGCATTATTGATGAATTTACATTC
CATATACGCTTGCACCGACTTTCTCATTGGTTGTCAAGATGGCGCCACTG
TCCATGGGCGGACAATGGAATTCGAATTTGCTTTCCCGTGGGTGGTTGGT
GTTGTGCCTAAGGGATACAAAGAGACTGCAATGTTGCCGGAAAACTGCCA
AAACCATTCACCATTAACATGGTTTACTAGATATAAAATTCTAGGAATCA
AGTCAGCAGGTGATTTCTCAAATTCAAATCGATCAATTGTGGATGGTCAG
AACGAGGCTGGCCTCTCTGCTGGAGCTTTATGGTTCGAAGGGTTTACAGA
GTACCCTGATGCAGTACCTGAGCAACAATGTAGTCACTCCATACCGCATA
TGCAATTGATCAATTATTTGCTAGGTAATTTTGCCACCGTTGAGCAGGTC
CGTACATCTTTCAAATACGATATCTTTCCATTTGTTTGGGGTCAATACGT
CACGTACTGGCATGGAGACATCAAGATCAATAAATACCAGTTCCCTCTGC
ATTTGAGCTTGGCTGACCGAAGTGGACATTCTATTGTGATTGAATACACG
AAAGGAAAAGGTCGCCaaatttttgataataaaattgGAATCTTAACCAA
TAGTCCTCCCTATGATTGGCATGTTCTGAATTTAGCCAACTCGATCANAT
CTTAAatgaagacagtTTTACCAGTGTTAGCGGCATTATTGATGAATTTA
CATTCCATATACGCTTGCACCGACTTTCTCATTGGTTGTCAAGATGGCGC
CACTGTCCATGGGCGGACAATGGAATTCGAATTTGCTTTCCCGTGGGTGG
TTGGTGTTGTGCCTAAGGGATACAAAGAGACTGCAATGTTGCCGGAAAAC
TGCCAAAACCATTCACCATTAACATGGTTTACTAGATATAAAATTCTAGG
AATCAAGTCAGCAGGTGATTTCTCAAATTCAAATCGATCAATTGTGGATG
GTCAGAACGAGGCTGGCCTCTCTGCTGGAGCTTTATGGTTCGAAGGGTTT
ACAGAGTACCCTGATGCAGTACCTGAGCAACAATGTAGTCACTCCATACC
GCATATGCAATTGATCAATTATTTGCTAGGTAATTTTGCCACCGTTGAGC
AGGTCCGTACATCTTTCAAATACGATATCTTTCCATTTGTTTGGGGTCAA
TACGTCACGTACTGGCATGGAGACATCAAGATCAATAAATACCAGTTCCC
TCTGCATTTGAGCTTGGCTGACCGAAGTGGACATTCTATTGTGATTGAAT
ACACGAAAGGAAAAGGTCGCCaaatttttgataataaaattgGAATCTTA
ACCAATAGTCCTCCCTATGATTGGCATGTTCTGAATTTAGCCAACTCGAT
CANATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070818-exon-scaffold_58-1491911889:608370..608864 | TCONS_00070818-exon-scaffold_58-1491911889:608370..608864 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1510915933:608370..608864 | TCONS_00070818-exon-scaffold_58-1510915933:608370..608864 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1575043694:608370..608864 | TCONS_00070818-exon-scaffold_58-1575043694:608370..608864 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1491911889:609259..609821 | TCONS_00070818-exon-scaffold_58-1491911889:609259..609821 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1510915933:609259..609821 | TCONS_00070818-exon-scaffold_58-1510915933:609259..609821 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1575043694:609259..609821 | TCONS_00070818-exon-scaffold_58-1575043694:609259..609821 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1491911889:610173..610657 | TCONS_00070818-exon-scaffold_58-1491911889:610173..610657 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1510915933:610173..610657 | TCONS_00070818-exon-scaffold_58-1510915933:610173..610657 | Clytia hemisphaerica | exon |
| TCONS_00070818-exon-scaffold_58-1575043694:610173..610657 | TCONS_00070818-exon-scaffold_58-1575043694:610173..610657 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:608370..610657 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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