TCONS_00070797 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070797
Unique Name	TCONS_00070797
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2300

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_58:445174..460510+

transcript sequence

>TCONS_00070797 ID=TCONS_00070797|Name=TCONS_00070797|organism=Clytia hemisphaerica|type=transcript|length=2300bp
ATTATCGGCTGTTATAAGAGGTCGCCAAAAGTTTTCGACCACTTGTTAGT
GGAAAGCTTCCTCAATGAAGATATGATGTGTGAATGTGCAATCAAGGCTC
AAGAGAATGGCGACATTGCATTCGCTGTTTCTGACTATCAAGCTTGTCTT
GCTACCAAAGATCAAGCAGGGTAtgcaaagattttgaaagataatacaCC
TGTGACCCATACTTATGANAGATCAAGCAGGGTAtgcaaagattttgaaa
gataAATCACCTGTGACCCATACTTATGATTGtatcaataattattttga
ggATTGTAGACCTGGTCAGCAATGTTTTGGTAATAACTACTATGAGTATA
TCTATGAACTGCCCAAGAAACAAACTGAAACTACCACAACACAAGCTCCA
ATCAAAACAACTGCTACACCAACTCAAATTAACGGTGGTTGGGGAGAATG
GACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCGGTAAAACTACAA
GGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGATTGT
GAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTTTGAATGCCCAAA
GAAACCAGTTAACGGTGGTTGGGGAGAATGGACGAAGCCAACTCCTTGCA
GCAAGTCATGTGGAGGTGGAACAACAACAAGGTCAAGAAAATGCGACAAC
CCAGCTCCTGCTAATGGAGGGTGGAATTGCGAAGGCTCTGGTACCGAAAC
CCAAAAATGCAATACTAATGAATGCCCAAAGCAAGCAGtaAACGGTGGTT
GGGGAGAATGGACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCGGT
AAAACTACAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGG
GAAAGATTGTGAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTTTG
AATGCCCAAAGAAACCAGTTAACGGTGGTTGGGGAGAATGGACGAAACCA
ACTCTTTGCAGCAAGTCATGTGGAGGCGGTAAAACTACAAGGTCAAGAAA
ATGCGACAACCCAGCTCCTGCTCATGGTGAGAAAGATTGTGAAGGCTCCG
ATACCGAAACGAGAGAATGCAACGCTAAACAATGCGCAGTTGATGGTGGA
TTCGGAGAATGGTCAGGGTTTGGAGAATGCAGTGTAACATGTGGTGTCGG
TACCAAAACACGACGACGAGAATGTGATCAACCAAAACCTTCGGGTGGTG
GAAAGACATGTCAAGGAGAAACCACACAAACGGAAAATTGTGATACCCAA
GTCAATTGTCCAGTGGATGGGAAGTGGGCAGAATGGTCAGAATGGGAATC
GTGTGATAAATGTTGTGGTGGAGGGAGTCAACGAAGATACCGAACTTGTG
ATAATCCACCACCAGGACCCAATGGAAAGAAATGTCAAGGAGAGAGGATC
GATTCACGAAAATGCAATACACATTCCTGTCCAGATCCAAAGAATTGCTT
TTTCAAGTACACTCAATACACACCACTTGACAAAGATGGAAAACCAATAT
TTTTGGATCAGCATCAAATCAAATGCCCGGCCAGTCACGTCTTGAACTAC
ATCAGACTCCAAAAGAACGAACAAGAAACCATGATCAGCTATGGATATCG
ATGCTGCAAGACACAAGCTTGCTTAAACTTACCTAAAACAAATGATGAAA
CTTATAATGGAGGAGGTTATGGAAAAGTCTTCAATTTGGATCACCAAACA
GTCGCTTGCAAAAACGAAGGCTTGAATTCCCTCAAACTTGACCGAGATAT
GACAAGATGGAACTACAAATATGATTGTTGCAAACTTGGCAACCAAAAGG
CAGAGCTGGATTGTTACAATGCAAACAGTCAATTCTTAAGTGACATGGGC
GGCAGTGTGTTATCTTTGTTGAACCAAGAAATTTCCTGCAAGTGCGATGA
TTATTATATCACTGATTTCAAAATGAATCGAAATTACAATGGAAATGAGG
ATCAAATCAGATATGATTTCCAATGttgtaaaatcaaaaaataaattgag
GGACTTTATCCTATTTGGGTATAAGAATATTTGAAAGAGCATTTTAGTAG
ATGAGATGGGTTATAGATAAGAATTTTATTGCTTTCAAATAATATTATGA
AAATTATTGGCTTTGAATAAAGATTTGTTTATTGAAAATGTTAGTTGTGC
ACTTTATTATTCAATTCTCAATACTTTAATTGCAATAGATTAAAACTTCT
CAGAGCACAGAGGACGCCATTTCCGGCGGTCAATTTACTCAAGTTACGAA

Run BLAST on NCBI

transcript from alignment at scaffold_58:445174..460510+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070797 ID=TCONS_00070797|Name=TCONS_00070797|organism=Clytia hemisphaerica|type=transcript|length=15337bp|location=Sequence derived from alignment at scaffold_58:445174..460510+ (Clytia hemisphaerica)
ATTATCGGCTGTTATAAGAGGTCGCCAAAAGTTTTCGACCACTTGTTAGT
GGAAAGCTTCCTCAATGAAGATATGATGTGTGAATGTGCAATCAAGGCTC
AAGAGAATGGCGACATTGCATTCGCTGTTTCTGACTATCAAGCTTGTCTT
GCTACCAAAGATCAAGCAGGGTAtgcaaagattttgaaagataatacaCC
TGTGACCCATACTTATGANAGATCAAGCAGGGTAtgcaaagattttgaaa
gataAATCACCTGTGACCCATACTTATGATTGtatcaataattattttga
ggATTGTAGACCTGGTCAGCAATGTTTTGGTAATAACTACTATGAGTATA
TCTATGAACTGCCCAAGAAACAAACTGAAACTACCACAACACAAGCTCCA
ATCAAAACAACTGCTACACCAACTCAAAGTCAGTAATACAATTATGCATT
TCAAGTGTCAGAAATTCTTTGTCTAGGCTTGAATTATTGTTTTACAATTT
TAAAcctgaaaaaatatttatcaagagttatagtgatttcttttgaaagt
aATCATGTATAGGTAGGGCAAGAAGCTAAAATAGAATAAATACACACTTC
ATAGCAAAgtgtattttaactttttacttgtgaaaataaatttatttttt
tgacatcTATTATCCCTCTTTCCGTTCCTTTGAAACTCACTCTGAATATT
AAATTTTGCATTAAATTTATCGCCATTCTAGTTAACGGTGGTTGGGGAGA
ATGGACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCGGTAAAACTA
CAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGAT
TGTGAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTTTGAATGCCC
AAAGAAACCAGGTATATTTTTCTTGCTAAGAATCATTTTGTAAAACGCAC
GTTCGTAAACTCGACTATACCTATTTGGAACAATCCCCCTAATGcaataa
aacaaaccaaatgtctccttaatttCAAATCAGTTTTGATACGTCACATT
TTCTGTCAGAACATGTTGTTACTAGTtcttgttcttttctttttattctt
gcTTAATTgccgtattactttgaataaacgtcCCGGGCGTTATGATCAAG
AATTCGTAAATATAGAAATAACAAAATAGCAATTCtaaaaatgtgatgga
gcccaattttcgaaagtaAATATTATTTCTTATCACCAGAttaagaaatg
tcccaaaaaaagagGTTTTCCAGGAATtcctcgagattttctcattagct
TTAATTCTAAaaggtttttctaattttgaattttaaatgtgGTTTTCTAT
TGATTAGGGCCATAAATATCTTTATCCTCTCTTAAGTAAATCATTACTTC
GATAATTGAAAGTAAAAAacaaattcattttcttttctagTTAACGGTGG
TTGGGGAGAATGGACGAAGCCAACTCCTTGCAGCAAGTCATGTGGAGGTG
GAACAACAACAAGGTCAAGAAAATGCGACAACCCAGCTCCTGCTAATGGA
GGGTGGAATTGCGAAGGCTCTGGTACCGAAACCCAAAAATGCAATACTAA
TGAATGCCCAAAGCAAGCAGGTATATTATCTAAGTTCGGCTGTTATATTT
TTACTTAAACTGTTTGATTATTAGATGTGATTGTATTTTGTAGAATATCA
ATGAAGCTTCATTCAACTTTATCACGTCCTACTGgctaatttattttgaa
aatatcgcATCCATAGGTAACAAACCGAAAAACTGTCTGATGAAATACCA
TTAgttaaattattgaaaatttatcaacatagtttttaattttttctagt
tAACGGTGGTTGGGGAGAATGGACGAAACCAACTCCTTGCAGCAAGTCAT
GTGGAGGCGGTAAAACTACAAGGTCAAGAAAATGCGACAACCCAGCTCCT
GCTCATGGTGGGAAAGATTGTGAAGGCTCCGATACCGAAACGAGAGAATG
CAACACTTTTGAATGCCCAAAGAAACCAGGTATATTTTTCTTGCTAAGAA
TGATTTTGTAAAACGCATGTTCGTAAACTCGACTATACCTATTTGGAACA
ATCCCCCTAATGcaataaaccaaaacaaatatCTCCTTAATTTCAAATCA
GTTTTGAAACGTCACATTTTCTGTCAGAACATGTTGTTACTAGTTCTTGT
CctgttctttttattcttgCTTCATTgacgtattactttgaataaacgcc
ccgggcgttaTGATCAAGAATTCGTAAGTacagaaacaacaaaatagcaa
ttcccaaaatgtgatggagcccacTTCTCGACagtaaatattatttttta
tcaCCAGATTAAGAAATGCCCCAAAAAAAGAGGTTTTCCAGGAATTCCTC
GAGATTATCTCATCAGCTTTAATTCTAaaggtttttctaattttgcaTTT
AAAATGTGGTTTTTGCCAcagcaggaagcctaaagcttccgaggatggca
ttcatagcttcacgcataaggaagttgggcaaacatctcataattttgcg
cacgtttttcagtattttagttccgggTAATTGGTGAACcggtaacattc
ttagcttgactgtatttctattattttattatcattaaaaacacttttcc
ggatttttttttatctgattatccattttcaaagctctatatgtcttttt
ttattacctcagggagtcgaatttagggaaattccttttttgttgggaaa
ttccctatttacaccacaagtagttattaaccgcactgagcaacgcaaat
tagaaatttttatcctttcaaaaatttgtcgtttgactattacagtaaaa
tggcagtttagtacagtagcgtttagtatgatTAAACAAACCATaatata
ccattattttggtaataaaagagatgacaaaaaaaaaacagataaataac
tTTACCTTACctctataagaagatatctatgagatggacacaaattgcta
acatttgtagactaaattttgcttcagatgagatgccaTTCTAACAGAAG
TAACGGCTATCTGTAACTCtgtaacatttctttccaaattcaacaattta
tttgatcgttcttctgcgatggcattttaatgaaaattatggctagtcTA
TTGATTAGTGCCATAAAAATATCActtatttcaaatgaaatacCGCGTAA
TATCATCGACTAATTATTGATTGATGtcagttaattttttttctttatcc
tcTCTTAAGTAAATCATTACTTTAATTATTGAAAGTAAAAAACAAATTCC
TTTTCTTTTCTAGTTAATGGTGGTTGGGGAGAATGGACGAAGCCAACTCC
TTGCAGCAAGTCATGTGGAGGTGGAACAACAACAAGGTCAAGAAAATGCG
ACAACCCAGCTCCTGCTAATGGAGGGTGGAATTGCGAAGGCTCTGGTACC
GAAACCCAAAAATGCAACAGTAATGAATGCCCAAAGCAACCAGGTATATT
ATCTAAGTTCGGCTGTTATATTTTTACTTAAACTGTTTATTAGATGTGAT
TGTATTTTGTAGAATATCAATGAAGCTTCATTCAACTTTATCACGTCCTA
CTTgctaatttattttgaaaatatcgcATCCATAGGTACCGAACCGAAAA
ATTGTCTGATAAAATACCATTAgttaaattattgaaaatttatcagCAAN
TCACGTCTTACTTGCTAATTTATTCTGAAAATATCGCATCCATAGGTACC
AAACCGAAAAACTGTCTGATAAAATACCATTAgttaaattattgaaaatt
tatcaacaaagtttttaattttttctagtaAACGGTGGTTGGGGAGAATG
GACGAAACCAACTCCTTGCAGCAAGTCATGTGGAGGCGGTAAAACTACAA
GGTCAAGAAAATGCGACAACCCAGCTCCTGCTCATGGTGGGAAAGATTGT
GAAGGCTCCGATACCGAAACGAGAGAATGCAACACTTTTGAATGCCCAAA
GAAACCAGGTATATTTTTCTTGCTAAGAATGATTTTGTAAAACGCACGTT
CGTAAACTCGACTATACCTATTTGGAACAATCCCCCTAATGcaataaaac
aaaccaaatgtctccttaatttCAAATCAGTTTTGAAACGTCACATTTTC
TGTCAGAACATGTTGTTACTAGTTCTTGTCctgttctttttattcttgCT
TAATTGCCGTATTActtaataaacgccccgggcgttaTGATCAAGAATTT
GTAAAtatagaaacaacaaaatagcaattcccaaaatgtgatggagccca
cTTTTCGACAGTAAACATTATTTCTTATCACCAGAtcaagaaatgtccca
aaaaaagagGTTTTCCAGGAATTCCTCGCGATTTTCTCATTAGCTTTAAT
TCtaaggtttttttaattttgaatttgaaatgtgGTTTTCTATTGATTAG
GGCCATAAAAATAtcacttatttaaaaaaaaaaaatactgtgTAATATTA
TCGGCTAATTATTGATTGATGTCAGttaattctttttctttatccTCTCT
TAAGTAAATCAATACTTTAATTATTGAAAGTAGAAAACAAATTCCTTTTC
TTTTCTAGTTAACGGTGGTTGGGGAGAATGGACGAAGCCAACTCCTTGCA
GCAAGTCATGTGGAGGTGGAACAACAACAAGGTCAAGAAAATGTGACAAC
CCAGCTCCTGCTAATGGAGGGTGGAATTGCGAAGGCTCTAATACCGAAAC
CCAAAAATGCAACACTAAGGAATGCCCAAAGCAACCAGGTATATTATCTA
AGTTCGGCTGTTATATTTTTACTCAAACTGTTTGATTATTAGATGTGATT
GTATTTTGTAGAATATCAATGAAGCTTCATTCAACTTAATCACGTCTTAC
TTGCTAATTTATTCTGAAAATATCGCATCCATAGGTACCAAACCGAAAAA
TTGCCTGATAAAATACTATTATTTAAATGAGtgaaaatttatcaacaaag
tttttaattttttttagtaaacgGTGGTTGGGGAGAANtgtattttaact
ttttacttACTTGACTTgtgaaaatgaatttattttttggacATCTATTC
TCCCTCTTTCTAGTTAACGGTGGTTGGGGAGAATGGACGAAACCAACTCT
TTGCAGCAAGTCATGTGGAGGCGGTAAAACTACAAGGTCAAGAAAATGCG
ACAACCCAGCTCCTGCTCATGGTGAGAAAGATTGTGAAGGCTCCGATACC
GAAACGAGAGAATGCAACGCTAAACAATGCGCAGGTAGCTAGAGTTTATT
ATCGTCGGTTTTATCTTTGTTCGAGGGGACATTTAAGAAAAAGATGTTCT
CGTTTATATTACAGGGGAAGAAAACCAAGTCTCTGAGATAAAATATCTTG
CCCCACTCCATCTCAGTGATCATAGTGCcctcttttttaaattctatgGC
TANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACGATA
CCAACTTTCATATCCAGGGTACAGTAATTTCCAATGACTCTTTGAAAGTT
TCTTTCTCTTCCAACCATAGGTTTGATCTTCTACTTGTTGCAACACACAC
CGAGCAAAGAGAACATCAACTACGTGTTGAACTTCATAGCTGCTGTAcca
aaacatgaatatcttgaTGAAGTTCTGGATATGTTGGACAACGCAACCAG
GACTGGTGGACATGAACTTGTAACCACGATTTCAGGtattagaattattt
tttttatttttcgctcGCGTCACAGCTATACTTGTCTTCGCTATTATGGT
TTAGCTTCACATGATCTGACCGGTAGTTATGACCCTTCTAAGCCACGCAA
ACGCTATCTTTTTTATGCTCTGTAGTAACTTGCTGATTTGTTCCTTCTTT
CACAGAATCAGGCAGTAACATTTTATACAGATGGTTGGTGCACGAAGTTT
CCAACAAAATTCGTATCAAAATCCTCAGCTTGATAGTCTACCtcctaaaa
aaaggaaaaatttcgGATGCTGGCAAAAAGAAGCTTTCTTTGGACGGGGA
TGGTTTATTTGACGGTATCGGTGAACTTCTATGCAAACAAGACATCGATC
GTGACGTCATTGTGCATCTACTCAAGTTAGGGATATCGGTTGATCGGACC
AGTGATTTGAAATCCGATATCTATACCGATTTTGGTAAAGTATTGACAGT
GTTCCATATCGTACAGTTTCATCCAAGACCTGTCAAACTGGAAGTTGCAA
TCAAAGTGAGTTTTCCCTTAATCTGTATCTTCATTTGAATGTTTAGGTTT
TAAAAGGTTAAGTTCCTTGTAAAGCGAGGAATGATTAATCGGGTCTGATT
ACGCGTAGATTTCCGCCTCATTCTCTTTGCTTTTTGAGCTACAACACAAA
TTTTAATCGCGTTCTTCAATGTGCGTTTTTCCATCTTCGTTTCATCACAA
TGTATATAGATTCTTTTTAAAACGAGGATTGATCGGGTATGAATTCTCTC
TAGGATTTTGACAACAACATGAAGTTTTACACCACGTGAATAATCTTGAA
ATTAACCACAAGTTTTGTACCTAACCGCAAGTTTTGTACCTAACCGCAAG
TTTTGTACCTAACCGCAAATTGTGTACTTGACCTTACATATTTATTGCTT
TACAGGTTCGAAATTCGCTCAAACTATCGGATATCAGTTCAGTGCGATGT
GCGAACGAACCTGGTTGGTACGAACCGATCTGGCGATTAATTGTATCTGA
AAACACACAACCCGAAGATCTTGAGGATGTGATGGAGGCAGAACTGGTGC
ACGTGGTGATTGAGATAATCCATATTGTGATGTGGACTGGAATCATAGGA
TCTGATATCGCAGCATGGACTGTAAGTGGCACTTTTTGGACTCCTCTCTA
GAATGAGGggtataataataaaaatcatGAACGAAACTTTATCTAGATAA
ATAAGTTTCAATTTATCGACTTAGATTGAAAGTTAATCATGGCTTGGATC
ACAAGATCAACAAAATCTTGTGATTGATCCAAGCTACGATAAATTTCCAG
AGTAACTCCCTATACTATCGGGGCATTAAGCAGTGGAATAGTTTGCCTTC
TAAAGAGTCAACTCATCCTCAGTGGAAGAATTTAAAGAGACCCTTAGTGT
NTAAAGTAGTCAACTCATCCTCAGTGGAAGAATTTAAAGAGACCCTTAGT
GTGGCCTGGAAAGCTAAAAAGTTTGAATATGATTGAAAGTGTCACTATTA
TTGCATACCTGTCTATAAACAATGTAAATAATTAACCcaaaatgtatgag
cgattcatagaggcccatgtgtccgcacggtggcctgcgaatttgtaaaa
caatattatatttattacatacTTGTGAGCAGAGTCTTTTGGtgagaaaa
ttatttattgAAATCTTAAACCTTCCCCAATCATAAGTCAGGTTGTATAA
GGAGCACGTGTTAGTGGATGTCAGTGGCCTACGAATCATTAGGTGTGTAT
CATAATAGGCGTGTTCAGTTTGCTGGTCATTGCCTTCGAGCGTCCACAGA
TAGCATCTCCTCTCTCTTACTCTGGAAACCCAAGCGGCTGGTTCAAAGAT
CGAGAAAGTTAACTTNCACAGAAGTCATCTCCTCTCTCTTACTCTGGAAA
CCCAAGCGGCTGGTTCAAAGATCGAGAAAGTTAACTTTTACTGACGCAGT
TAGCAGGGACACTGGGCTTCTTTATAGTGACCTGGAGACTGCCATGCGCG
ACTGCGATTCTTGGCGCCAGAGGGTGGAATCCATCATCTCGACCGCGgtc
gaaagatgatgatgatgatgatgacgaaTCATTAGAATGAAATGAACATT
TTGGTTAAGTGTGTCTTCCTTTTCGGTGTAACTATATGCTTCTGAAAAAG
TTAATCATCATCTTCCCATATTTCAAACCATCTTAATTTGTACACCACCA
CTGAACAATCAAGCTTCTGTAATTAGTTTTGGGTGTAAGCATGGACAAGA
GGGATGCGGGTTTCTTGCGAGAGACTTGAGTATTATTCAGCTACTATTTA
TAACCTACTACAGTTGATGGTGGATTCGGAGAATGGTCAGGGTTTGGAGA
ATGCAGTGTAACATGTGGTGTCGGTACCAAAACACGACGACGAGAATGTG
ATCAACCAAAACCTTCGGGTGGTGGAAAGACATGTCAAGGAGAAACCACA
CAAACGGAAAATTGTGATACCCAAGTCAATTGTCCAGGTAACATTCATac
gcgttttttttaagaaactagttttaccaagcagcctcaatgtttcttaa
gaaatcggccttgagccttaaatgtttcttccatgtttctaaactttgtg
aCATAATCAGTCTATTTTTCATGCAaggaaaaaacatttgttttgattgg
aaggttcttaaaaaaaatgttattttctcattctcagcctcagcatgttt
cttaaatgtttcttagtttttaggcattctgagcctcatgtttcttaaaa
gtgtgtttcttaaaaaaagacgtgtatgtAACATAACATTCATAAGTATC
CTTCCATACAGAAATTATTGGCAAATTTCGGGATCAATGTCGACTCTAGC
CAATAGAATAGCTGAATTTCCTTTCGGAACTGTGTGGAGCAAAAGGAAGG
GCAGTTTCATTCATTGTATTGCTTTTCGGAAAGTTTTCCTACACGTTGAA
TATTGATCATATGGCAAATTGATCCTAGCTTATTTTACCTTGTATGACTC
GGACATCTGGATCTGGTTCAATATTATAGAATCAATATCTGCATAAATAA
AGATGCTTAACGCTGCCAGAACGTGCTCACACGTCATTGTCCCttcatga
aaaagaaataaaaatacttcttaatacttaaaactttcttctgTTTGGTG
GATGggaaatctctttttaaatGGATGAGAGTTTAAGAGGAGCGTGAAAA
GTGAGGAATCCAAGTATTAAGTGAGAACAAATTTTGCATTGCTAAAATAA
TTCTTCTGTTTAGTGGATGGGAAGTGGGCAGAATGGTCAGAATGGGAATC
GTGTGATAAATGTTGTGGTGGAGGGAGTCAACGAAGATACCGAACTTGTG
ATAATCCACCACCAGGACCCAATGGAAAGAAATGCCAAGGAGAAAGAATC
GATTCACGAAAATGCAACATTGACCCTTGTCGAGGTATCCCTAGACATTT
TATTATAAGTGTAGGCAGATTGTTTAACTTATTTTAACGGTTTGAATCTG
ccatatatatttttattactttaatgACTTCTCACCAAAGCCACATTTAA
TATAGTTTTAGTTTGTGATGAAACTCATTTACTCATTTCAGATCAGGATT
GCTTTTTTAAATACACCCCATTCACGCCAATCGACAAAGACGGAAAACCA
ATATTTTTGGACCACCACCAAATCAAATGCCCGGCCAGTCACGTCTTGAA
CTACATCAGACTCCAAAAGAACGAACAAGAAACCATGATCAGCTATGGAT
ATCGATGCTGCAAGACACAAGCTTGTGCAAACTTACCTAAAACAAACGAC
GAAACTTATAATGGAGGAGGTTATGGAAAAGTCTTCAATTTGGATCACCA
AACAGTCGCTTGCAAAAGTGACGGCTTGAGTTCCCTCAAACTTGACCGAG
ATATGACAAGATGGAACTACAAATATGATTGTTGCAAACTTGGCAACAAA
AATGCAGAACTGGATTGTTACAATGCAAACAGTCAATTCTTAAGTGACAT
GGGCGGCAGTGTGTTATCTTTGTTGAACCAAGAAATTTCCTGCAAATGTG
ATGATTATTATATCACTGATTTCAAGATGAATCGAAATTACAATGGAAAT
GAAAATCAGATCAGATATGATTTCCAATGTTGTAAAATTACTTCAGCACC
ATGCAACACCAAAGAATGCCAAGTAGTTGGTAAGAATCAACCACCTTTCT
TTCTTTACGCTCGTTTCTCCTTCTACCATCCTCTTCCTGCAATTGATCCC
TCCTCTCCCACATCAATCTCAACCTGCTCTTTCCCTCCTTCTCATCCCTC
TCACTCTATCTTCGTTCAATTCCTCCCTCCTCCTTATTACGAACTACCTG
CCCTCCTCACTTTTTCCCTTCCTCTCTCCGTTTCCTCTGTTCCGTTCCGC
ATTATCCCTCCTCATTCTAATTTATACTATTTTTCCACCAAGAAATCCTT
CCTCAATCGAATATTCCTTCAGCCAGCTCTCCactgttttttcttttcta
ggTAATGGTAATTGGGGTGAATGGACCTATTGGAGTGACTGTAGTGCCAC
ATGTGGAAATGGAGTTCACAAACGAACAAGAAAATGTGACAATCCTCCCG
CTGTTGGTGGTGGAAAAGATTGTCAAGGAGAAGCCGTCGAAACCAAACCA
TGTAACACTGGCCAAAAGTGTCCTGGTAAGAGAGTTTTTGCCTTAAGATT
TAACTTTTTTCACCGTGAAAATCAATGATTCCTAACATCCTCGTTTAACA
TATATTAAACGTCACTCTTTGAATGTGTCCACAAATTTTTGGTGTCCTTT
TTTAAAGAGTTTAACGATGCTGTTTTATATTGTAGCTTTTTACATAATGT
CAAATAAGcccattttctttttaaatggaTGAGAGTTTTAAGAGGTGCGT
GAAAAGTGAGGAATCCAAGTATTGAGTGAAAACATATTTTGCATTGCTAG
AATAATTTTTCTGTTTAGTGGATGGGAAGTGGGCAGAATGGTCAGAATGG
GAATCGTGTGATAAATGTTGTGGTGGAGGGAGTCAACGAAGATACCGAAC
TTGTGATAATCCACCACCAGGACCCAATGGAAAGAAATGTCAAGGAGAGA
GGATCGATTCACGAAAATGCAATACACATTCCTGTCCAGGTTCGAAAtct
caatttgttcttttgttgctctccattttaggtattgcaaaaaaaaattg
tatcctATGGGGAAATCATTTTGGGGAAAGGTAGTGGATTTTTTTtcctg
taattttttttctttttttctcttcttccttggttttttttattcttcat
tttttagacCACTCTGGATTTTTGACCTCATTTTACTGTCTAATTTGGAC
TTAAACTCGAACCATACacctgaattttttattttccaacgCACCCTGAA
CGTCGAACCTCCCAAACATTGAGGGtttaaagttctttttttcttgaaat
gaGCCAAGTTATAACAAGATTCTACTTTTTCTCAAAGGCAAAGTATATCT
CTTTTACAGATCCAAAGAATTGCTTTTTCAAGTACACTCAATACACACCT
CTTGACAAAGATGGAAAACCAATATTTTTGGACCACCATCAAATCAAATG
CCCGGCCAGTCACGTCTTGAACTACATCAGACTCCAAAAGAACGAACAAG
AAACCATGATCAGCTATGGATATCGATGCTGCAAGACACAAGCTTGTGCA
AACTTACCTAAAACAAATGATGAAACTTATAATGGAGGAGGTTATGGAAA
AGTCTTCAATTTGGATCACCAAACAGTCGCTTGCAAAAACGAAGGTTTGA
ATTCTCTCAAATTGGACCGAGATATGACAAGATGGAACTACAAATATGGT
TGTTGCAAACTTGGTAACCAAAAGGCAGAGCTGGATTGTTACAATGCAAA
CAGTCAATTCTTAAGTGACATGGGTGGCAGTGTGTTATCTTTGTTGAACC
AAGAAATTTCCTGCAAGTGCGATGATTATTATATCACTGATTTCAAAATG
AATCGAAATTACAATGGAAATGAAGATCAGATCAGATATGATTTCCAATG
TTGTAAAATTACTTCAGCGCCATGCAACACCGAAGAATGCCAAGTAGTTT
GTAAGAATCATTCTTCCCTCTTCACCTTCCGCCCTTATTTATATTTCCAC
CTCTACGATCagtcaggaagaaaagacacttttttattctgctactggca
gtttcatgccacttttATGACAATGTTCAGGCACcaactaaaaaatattt
ccagCTCTATGATCATTCCTTCTCTCTCCCTCCTCCCTATTCTCTCTTTC
TTCCCTCAGTCCTTCTTCCTTCCACCATCCTCCCTTATTCATTCCTTCTC
TTTTCGTCCCTTCTCTTTTACATTCTCTCTCCTCTTTCCATGTTTTTCTC
ACTAGCTAATGGTAATTGGGGCGAATGGACCTATTGGAGTGACTGTAGTG
TCACATGTGCAAATGGAGTTCACAAACGAACAAGAAAATGTGACAATCCT
CCCCGTCTTGGTAGTGGAAATGATTGTGAAGGAGAAGCTGTCGAAACCAA
GCCATGTAACACTGGCCGAAAGTGTCCTGGTAAGAGAGTTTTCCttttaa
attaaactttttcacCGTGAAAATCAATGATTCCTTACATCCTCGTTTAA
CATTGATATTAAACGTCACTATTTGAATGTGTCCTCAAATTTTTGCTGTC
CTTTTTTAAAGAGTTTAACGATGCCGTTTTATTGAAGTCCATTAGTGCCA
TTTAGATTTTcctttaattttttaacgacgaaactgaaaataaattgtta
CTTTGTTTCGTCGTCGAAAAAAATCTACAACGAAACTAAAGGAAattgaa
aatggtggcccttGATGGTTGCAAAATGGAAATATCATTGATTCTGGTGG
ATTCTGAAGATGGATTTGAATgctctggtgaatgcaatgctGGTGAAGAT
GGTTCTTATGAATAAAATAAGATGCTGGCGATAATGAACCAGAATAAGGA
TGTGATGGTGGATATTGTTGGAATCACTGCTATCAATAGTgcaaatgatg
aaatcaatggtgcaaatgatggaatcaatggttggTTCCATCTCCCGCAC
AATGGATTCCATCATCTCATCGTGCTACTGGTTTGATTCCATTATCGGTT
CCATTGATTCTATCacttgcaccattgattccatcatttgcaccattgat
ttcatcatttgcACTATTGATTAGTTCCAATGATTCCATTGACACCGGTG
ATTCCGACAATATCCACCATCAGATCCTTTTTCTGGTTCATTATTGCCAG
CATCTTATTTTATTCACAAGAACCATCTTCGCCagcattgcattcaccag
aacatTCAAATCCATCTTCAGAATTCACCAGAATTAACAATATTTCCCTT
TTGCAACCatcagggccaccattttcaaagattttttaatttcgttgttg
attttttcgacgacgaaacgaagtaacaatttattttcagttttgtcGTC
AGTTTTTTCGACGACGAAATGAAgtaacaatttattttcaagttcgtcgt
caattttttagtttcgtcATTAAAAGATTAAAGGAGAATCTAAATGGCAC
TAATGGGCTTCCGTATGTTTTATACTGTAGCTTTTTACATAATGTCAAAT
AAAgccaatttctttttaaattgacGAGAGTTTAAGAGGAGCGTGAAAAG
TGAGGAATCCAAGTATTAAGTGAAAACATATGCATTGCTAGAATAATTTT
TCTGTTTAGTGGATGGGAAGTGGGCAGAATGGTCAGAATGGGAATCGTGT
GATAAATGTTGTGGTGGGGGAAGTCAACGAAGATACCGAACTTGTGATAA
TCCACCACCAGGACCCAATGGAAAGAAATGTCAAGGAGAGAGAATCGATT
CACGAAAATGCAATACACATTCCTGCCCAGGTTCGAgatatcaatgtttt
cttttggaGCTTTCCGTTATGGGCTACTCCAGAAAAGAATTTGTACTTCA
TTGGTTGAGGAGGTCATTTTTGGGAAAGGtgacccctggattttttccac
tttttcagGACCccttagtttttattttattttttagaccaccctggatt
tttacctCATTCTACTGAGAATACCCTGGATTTACACTCGAACCATACAC
CTggatttttattcttttcagaTCCCACAGGACGTCGAACCTTCCCAACA
TAGGGGTTTTTGagttctttctttctttaattAAATGATAAGCCCAGTTT
TATCTTTCGAATTCAAGGTATAacaagattttactttttttcaaacgCAA
AATATGTTATCTCTTTTACAGATCCAAAGAATTGCTTTTTCAAGTACACT
CAATACACACCACTTGACAAAGATGGAAAACCAATATTTTTGGATCAGCA
TCAAATCAAATGCCCGGCCAGTCACGTCTTGAACTACATCAGACTCCAAA
AGAACGAACAAGAAACCATGATCAGCTATGGATATCGATGCTGCAAGACA
CAAGCTTGCTTAAACTTACCTAAAACAAATGATGAAACTTATAATGGAGG
AGGTTATGGAAAAGTCTTCAATTTGGATCACCAAACAGTCGCTTGCAAAA
ACGAAGGCTTGAATTCCCTCAAACTTGACCGAGATATGACAAGATGGAAC
TACAAATATGATTGTTGCAAACTTGGCAACCAAAAGGCAGAGCTGGATTG
TTACAATGCAAACAGTCAATTCTTAAGTGACATGGGCGGCAGTGTGTTAT
CTTTGTTGAACCAAGAAATTTCCTGCAAGTGCGATGATTATTATATCACT
GATTTCAAAATGAATCGAAATTACAATGGAAATGAGGATCAAATCAGATA
TGATTTCCAATGttgtaaaatcaaaaaataaattgagGGACTTTATCCTA
TTTGGGTATAAGAATATTTGAAAGAGCATTTTAGTAGATGAGATGGGTTA
TAGATAAGAATTTTATTGCTTTCAAATAATATTATGAAAATTATTGGCTT
TGAATAAAGATTTGTTTATTGAAAATGTTAGTTGTGCACTTTATTATTCA
ATTCTCAATACTTTAATTGCAATAGATTAAAACTTCTCAGAGCACAGAGG
ACGCCATTTCCGGCGGTCAATTTACTCAAGTTACGAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_044050	XLOC_044050	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_58	supercontig	scaffold_58:445174..460510 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10395e-06	0	3.81018e-09	1.57918e-09	0	0	0	0	0	1.22745e-05	0	0	0	6.27366e-07	0	0	0	0	0	0	0	0.345509	0	0	0.647516	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00070797 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 9.679e-87
Identity = 154/351 (43.87%), Postives = 203/351 (57.83%), Query Frame = 2

Query:  431 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTLCSKSCGGGKTTRSRKCDNPAPAHGEKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1483
            +GG+ +W+    CS +CG G   RSR C+ P PA+GGK C+GSD E R C    CP   V+G W EW+    C++SCG G  TR+R C+NP+  +GG  CEG+  E   CN   CP   V+G W  W     CS+SCG G  TR+R C+NP PA GG  C+G++T+ + CN   CP   ++G W  W   + CS SCGGG   R+R C +P P +G + CEGSD ++  CN+  C   G +  WSG+G CS TC  G   R R CD P PS GG+ C G  +Q + C+T + CPVDG W  W  W  C   CGGG + R R CD+P P   G+ C G+     +CN  +CP
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

HSP 2 Score: 256.529 bits (654), Expect = 9.082e-71
Identity = 127/292 (43.49%), Postives = 172/292 (58.90%), Query Frame = 2

Query:  608 VNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTLCSKSCGGGKTTRSRKCDNPAPAHGEKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1483
            V+GG+ +W+    CS +CG G   RSR C+ P PANGG  C+GS  E + C    CP   V+G W EW+    C++SCG G  TR+R C+NP+  HGG+ CEG+  E   CN   CP   V+G W  W     CS+SCG G  TR+R C+NP PA G   C+G++T+ + CN + C + G +  W+ +  CSV+CG G + R R C  P P  GG+ C+G   Q++ C++   CP  G W+ WS W +C + C GG  RRYRTCDNPPP   G+ C G     ++CNT  CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812

HSP 3 Score: 162.925 bits (411), Expect = 5.214e-41
Identity = 81/179 (45.25%), Postives = 105/179 (58.66%), Query Frame = 2

Query:  431 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKP 967
            +G W  W   + CS SCGGG   R+R C +P P +GG+ CEGSD ++  CN+  CP    +G W  W+    CS++C GG   R R CDNP P+NGG  C G  ++ Q+CNT+ CP   V+G WG W   + CS SCGGG+ TR R CD+P P  GG+ C G  T+   CN   CP  P
Sbjct: 4700 HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT---HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP---VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGP 4872

The following BLAST results are available for this feature:

BLAST of TCONS_00070797 vs. Swiss-Prot (Human)

BLAST of TCONS_00070797 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	9.679e-87	43.87	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

You are here

TCONS_00070797 (transcript) - C. hemisphaerica