|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070794 ID=TCONS_00070794|Name=TCONS_00070794|organism=Clytia hemisphaerica|type=transcript|length=2888bpRun BLAST on NCBI transcript from alignment at scaffold_58:445159..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070794 ID=TCONS_00070794|Name=TCONS_00070794|organism=Clytia hemisphaerica|type=transcript|length=15352bp|location=Sequence derived from alignment at scaffold_58:445159..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070794 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 2.498e-58 Identity = 105/230 (45.65%), Postives = 142/230 (61.74%), Query Frame = 2
Query: 446 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1135
+GG+ +W+ CS +CG G RSR C+ P PA+GGK C+GSD E R C CP V+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN + C V G + W +G CS +CG GT+TR R C+ P P+ GG C G TQ + C+ + NCP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN DPC
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 210.305 bits (534), Expect = 2.765e-55 Identity = 100/230 (43.48%), Postives = 132/230 (57.39%), Query Frame = 2
Query: 446 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1135
+G W W CS+SCG G TR+R C+NP PA GG C+G++T+ + CN CP ++G W W + CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ C G + WSG+G CS TC G R R CD P PS GG+ C G +Q + C+T + CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN+ C
Sbjct: 4643 HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 3 Score: 165.622 bits (418), Expect = 3.515e-41 Identity = 78/174 (44.83%), Postives = 106/174 (60.92%), Query Frame = 2
Query: 446 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCP 967
+G W W + CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ CP +G W W+ CS++C GG+ R R CDNP P++GG+ C G D++ + CN C VDG +G W + +CS +CG G KTR+R CD P P GG+ C G+TTQ C+ Q CP
Sbjct: 4700 HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT---HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 4 Score: 154.451 bits (389), Expect = 8.309e-38 Identity = 73/167 (43.71%), Postives = 98/167 (58.68%), Query Frame = 2
Query: 623 VNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCN 1123
V+GG+ +W+ CS +CG G RSR C+ P PA+GGK C+GSD E R C K C VDG + EWS + EC+ +CG G +TR R C+ P GG+ C+G + C+ + CPV G W+ W W +C + CG G+Q R R C+NPPP G C G + CN
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIR-PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN 4693 HSP 5 Score: 126.331 bits (316), Expect = 3.699e-29 Identity = 64/156 (41.03%), Postives = 84/156 (53.85%), Query Frame = 2
Query: 740 DCEGSDTETRECNAKQCA------------VDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPCRDQDCFFKYTPF 1171
D + DT EC A+ V GGF +WS + CSVTCG G + R R C+QP P+ GGK CQG + NC + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CNI PC + + P+
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPW 4652 HSP 6 Score: 114.775 bits (286), Expect = 1.301e-25 Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 1700 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2071
CN C + +G W W WS CSV+C G +RTR C +P G CEG V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 7 Score: 109.768 bits (273), Expect = 4.361e-24 Identity = 51/124 (41.13%), Postives = 69/124 (55.65%), Query Frame = 2
Query: 1700 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2071
CN C V +G W W W CS +C G R R C+NPP G+ C+G + + CN R CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 8 Score: 109.383 bits (272), Expect = 6.279e-24 Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 2
Query: 1721 VVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2071
V +G + +W+ W CSVTC G+ KR+R C+ P G C+G +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 9 Score: 108.612 bits (270), Expect = 1.108e-23 Identity = 52/124 (41.94%), Postives = 66/124 (53.23%), Query Frame = 2
Query: 1700 CNTEECQVVSNGNWGEWTYWSDCSVTCANGVHKRTRKCDNPPRLGSGNDCEGEAVETKPCNTGRKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2071
CN++ C ++GNW W+ W CS TC G +R R CDNPP G C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4749 CNSDPCP--THGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.