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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070790 ID=TCONS_00070790|Name=TCONS_00070790|organism=Clytia hemisphaerica|type=transcript|length=2142bpRun BLAST on NCBI transcript from alignment at scaffold_58:445152..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070790 ID=TCONS_00070790|Name=TCONS_00070790|organism=Clytia hemisphaerica|type=transcript|length=15359bp|location=Sequence derived from alignment at scaffold_58:445152..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070790 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 261.922 bits (668), Expect = 5.429e-73 Identity = 129/291 (44.33%), Postives = 169/291 (58.08%), Query Frame = 3
Query: 453 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSNTETQKCNTKECPKQPVNGGWGEWTKPTLCSKSCGGGKTTRSRKCDNPAPAHGEKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1325
+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN CP V+G W W CS+SCG GT TR+R C+NP PA GG C+G+ T+ Q CN + CP ++G W W + CS SCGGG R+R C +P P +G + CEGSD ++ CN+ C G + WSG+G CS TC G R R CD P PS GG+ C G +Q + C+T + CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 2 Score: 257.684 bits (657), Expect = 1.444e-71 Identity = 127/291 (43.64%), Postives = 173/291 (59.45%), Query Frame = 3
Query: 453 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSNTETQKCNTKECPKQPVNGGWGEWTKPTLCSKSCGGGKTTRSRKCDNPAPAHGEKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1325
+GG+ +W+ CS +CG G RSR C+ P PA+GGK C+GSD E R C CP V+G W EW+ C++SCG G TR+R C+NP+ +GG CEG+ E CN + CP V+G W W CS+SCG G TR+R C+NP PA G C+G++T+ + CN + C + G + W+ + CSV+CG G + R R C P P GG+ C+G Q++ C++ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 3 Score: 212.616 bits (540), Expect = 9.066e-57 Identity = 103/232 (44.40%), Postives = 142/232 (61.21%), Query Frame = 3
Query: 630 VNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSNTETQKCNTKECPKQPVNGGWGEWTKPTLCSKSCGGGKTTRSRKCDNPAPAHGEKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 1325
V+GG+ +W+ CS +CG G RSR C+ P PANGG C+GS+ E + C K CP V+G W EW+ C++SCG G TR+R C+NP+ HG + CEG+ E CN + C V G + W +G CS +CG GT+TR R C+ P P+ GG C G TQ + C+ + NCP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 4 Score: 113.235 bits (282), Expect = 1.871e-25 Identity = 54/119 (45.38%), Postives = 71/119 (59.66%), Query Frame = 3
Query: 453 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSNTETQKCNTKECPKQP 809
+G W W+ CS++C GG+ R R CDNP P++GG+ C G D++ + CNT CP V+G WG W + CS SCGGG TR R CD+P P GG C G T+ +CN + CP P
Sbjct: 4757 HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP---VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGP 4872 The following BLAST results are available for this feature:
BLAST of TCONS_00070790 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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