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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070788 ID=TCONS_00070788|Name=TCONS_00070788|organism=Clytia hemisphaerica|type=transcript|length=3076bpRun BLAST on NCBI transcript from alignment at scaffold_58:445151..460510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070788 ID=TCONS_00070788|Name=TCONS_00070788|organism=Clytia hemisphaerica|type=transcript|length=15360bp|location=Sequence derived from alignment at scaffold_58:445151..460510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070788 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 261.536 bits (667), Expect = 4.438e-71 Identity = 129/290 (44.48%), Postives = 168/290 (57.93%), Query Frame = 1
Query: 454 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1323
+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN CP V+G W W CS+SCG GT TR+R C+NP PA GG C+G+ T+ Q CN CP ++G W W + CS SCGGG R+R C +P P +GG+ CEGSD ++ CN+ C G + WSG+G CS TC G R R CD P PS GG+ C G +Q + C+T + CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN+ C
Sbjct: 4586 DGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 2 Score: 258.455 bits (659), Expect = 3.743e-70 Identity = 127/290 (43.79%), Postives = 172/290 (59.31%), Query Frame = 1
Query: 454 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1323
+GG+ +W+ CS +CG G RSR C+ P PA+GGK C+GSD E R C CP V+G W EW+ C++SCG G TR+R C+NP+ +GG CEG+ E CN CP V+G W W CS+SCG G TR+R C+NP PA GG C+G++T+ + CN + C + G + W+ + CSV+CG G + R R C P P GG+ C+G Q++ C++ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CN D C
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP---VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSD-PCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 215.312 bits (547), Expect = 1.080e-56 Identity = 104/231 (45.02%), Postives = 141/231 (61.04%), Query Frame = 1
Query: 631 VNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1323
V+GG+ +W+ CS +CG G RSR C+ P PANGG C+GS E + C CP V+G W EW+ C++SCG G TR+R C+NP+ HGG+ CEG+ E CN + C V G + W +G CS +CG GT+TR R C+ P P+ GG C G TQ + C+ + NCP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN DPC
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP---VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNER-NCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 4 Score: 209.534 bits (532), Expect = 7.469e-55 Identity = 103/234 (44.02%), Postives = 140/234 (59.83%), Query Frame = 1
Query: 454 NGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNTFECPKKPVNGGWGEWTKPTPCSKSCGGGTTTRSRKCDNPAPANGGWNCEGSGTETQKCNTNECPKQAVNGGWGEWTKPTPCSKSCGGGKTTRSRKCDNPAPAHGGKDCEGSDTETRECNAKQCAVDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCP 1155
+G W W CS+SCG G TR+R C+NP PA GG C+G++T+ + CN CP ++G W W + CS SCGGG R+R C +P P GG CEGS ++ CN++ CP +G W W+ CS++C GG+ R R CDNP P++GG+ C G D++ + CN C VDG +G W + +CS +CG G KTR+R CD P P GG+ C G+TTQ C+ Q CP
Sbjct: 4643 HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP---IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPT---HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQA-CP 4869 HSP 5 Score: 125.176 bits (313), Expect = 9.949e-29 Identity = 63/144 (43.75%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 928 DCEGSDTETRECNAKQCA------------VDGGFGEWSGFGECSVTCGVGTKTRRRECDQPKPSGGGKTCQGETTQTENCDTQVNCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNIDPC 1323
D + DT EC A+ V GGF +WS + CSVTCG G + R R C+QP P+ GGK CQG + NC + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CNI PC
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNK-PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC 4640 HSP 6 Score: 118.242 bits (295), Expect = 1.481e-26 Identity = 55/124 (44.35%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 1888 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2259
CN + C + +G W W WS CS +CG G +RTR C +P GG+ C+G V++ CN+ CP G W+ WS W +C + C GG RRYRTCDNPPP G+ C G ++CNT CP
Sbjct: 4692 CNERNCPI--HGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNS-DPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP 4812 HSP 7 Score: 115.546 bits (288), Expect = 1.049e-25 Identity = 51/114 (44.74%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 1918 NGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2259
+G + +W+ W CS TCG G+ KR+R C+ P GGK CQG +E + C + CPVDG W+EWS WE C + CG G+Q R RTC+NP G+ C+G ++ CN CP
Sbjct: 4529 HGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQ-NKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641 HSP 8 Score: 112.849 bits (281), Expect = 5.853e-25 Identity = 52/124 (41.94%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 1888 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2259
CN + C V +G W W W CS +CG G R R C+NPP GG C G + + CN + CP+ GKWA W+ W +C CGGG+++R R C +P P G+KC+G + S CN+ CP
Sbjct: 4635 CNIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE-RNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755 HSP 9 Score: 111.309 bits (277), Expect = 2.120e-24 Identity = 53/124 (42.74%), Postives = 66/124 (53.23%), Query Frame = 1
Query: 1888 CNTKECQVVGNGNWGEWTYWSDCSATCGNGVHKRTRKCDNPPAVGGGKDCQGEAVETKPCNTGQKCPVDGKWAEWSEWESCDKCCGGGSQRRYRTCDNPPPGPNGKKCQGERIDSRKCNTHSCP 2259
CN+ C +GNW W+ W CS TC G +R R CDNPP GG+ C G + + CNT CPVDG W W W C CGGG + R R CD+P P G+ C G+ +CN +CP
Sbjct: 4749 CNSDPCPT--HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDM-CPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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