|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070783 ID=TCONS_00070783|Name=TCONS_00070783|organism=Clytia hemisphaerica|type=transcript|length=796bp
tgTATATATTTCAGATTATTTAGCCTGTAATcacaatttcttcttttgtt
ctatTAGGATCCACAAATACGGCAAAAAGAAGAAGATTACAATGCTATAG
AACTTAAAATTGAACGTGAATTTATAGAAACACTTCAAGTTAGATGTTAT
CGTGAAAGACAATATAAAGCTGAATTGCGACAGCAAGGACATATGTGGGG
AAGTCGCGAACTACTTGATAAAGCCGAAAGATATGTACCTGAGTCATGTG
ATCGGTTAAAAGATTTACAAGGTCGTGGACAGGATTAGGTGAATGTGTTG
GATTGGGTTATTCTGCTTCTGATCACCAGAAAATCAAGcatatttttgct
ttttggaTTAGAATGTTTCCCATGTCTGtgaaagaaatatggaaagggAT
ATGTGGTACTTTTTGATTCGTTTCCACCACCCTGGAAAGAGAATGTTGCT
GCTTTCTGCTTAACAATAAAGCTCGCCATTGCATCGCATGGCTGAAAATC
TGCACATTCATCAAAAGATTGAGGAAGGAGCTATAATAACACTTATGGTG
ACAACGAAATGTTATATTGCTATTGCCGTGATACATGACATGTTATCTGC
TGTTAAGAAATCCTTTATTCTGGATATTTTGAGATCAAATTAAGAATTAC
ATAGAAATCCAGATATTTTGTTATTTGTTGTtttaaattatcaaaattta
tatatataatGCTGAATTAACGTTTATTTTTAATCTTATTTTTGTGTGTT
TAGAAAGTGATTTTGTTTATAtgattttcttttagttttgtGCGTA Run BLAST on NCBI transcript from alignment at scaffold_58:413866..415042+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070783 ID=TCONS_00070783|Name=TCONS_00070783|organism=Clytia hemisphaerica|type=transcript|length=1177bp|location=Sequence derived from alignment at scaffold_58:413866..415042+ (Clytia hemisphaerica)
tgTATATATTTCAGATTATTTAGCCTGTAATcacaatttcttcttttgtt
ctatTAGGATCCACAAATACGGCAAAAAGAAGAAGATTACAATGCTATAG
AACTTAAAATTGAACGTGAATTTATAGAAACACTTCAAGTTAGATGTTAT
CGTGAAAGACAATATAGTATGCtacttgtttttgtttttttcaattggGG
TCTACAGATTCTAATATGCAGAAAAGTAAACAAATACCGATGAGATTTTC
AGACTAGTgcttttcatgctaaatgctaAATAAGACAAAAACTTGTTGTT
ATCGAATATTACCGATCAGGTACCGGCTCGAGCCAGGATAGAAGGATCTa
cctttcttcaaaagaaaaacaagaaaattattGGTTATTATTGAATTCAG
AATGAAAATTATATTGCCGAAATTAATTATTTAAAATTCTGGCgttagaa
tttttttccatcCAAAATTCGCTTCATACTTAGTACACAAATAACATTTA
AAGcttcatatatatttttttcattatacTATCTTTCTAATTTACAGAAG
CTGAATTGCGACAGCAAGGACATATGTGGGGAAGTCGCGAACTACTTGAT
AAAGCCGAAAGATATGTACCTGAGTCATGTGATCGGTTAAAAGATTTACA
AGGTCGTGGACAGGATTAGGTGAATGTGTTGGATTGGGTTATTCTGCTTC
TGATCACCAGAAAATCAAGcatatttttgctttttggaTTAGAATGTTTC
CCATGTCTGtgaaagaaatatggaaagggATATGTGGTACTTTTTGATTC
GTTTCCACCACCCTGGAAAGAGAATGTTGCTGCTTTCTGCTTAACAATAA
AGCTCGCCATTGCATCGCATGGCTGAAAATCTGCACATTCATCAAAAGAT
TGAGGAAGGAGCTATAATAACACTTATGGTGACAACGAAATGTTATATTG
CTATTGCCGTGATACATGACATGTTATCTGCTGTTAAGAAATCCTTTATT
CTGGATATTTTGAGATCAAATTAAGAATTACATAGAAATCCAGATATTTT
GTTATTTGTTGTtttaaattatcaaaatttatatatataatGCTGAATTA
ACGTTTATTTTTAATCTTATTTTTGTGTGTTTAGAAAGTGATTTTGTTTA
TAtgattttcttttagttttgtGCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070783-exon-scaffold_58-1491911889:413866..414031 | TCONS_00070783-exon-scaffold_58-1491911889:413866..414031 | Clytia hemisphaerica | exon |
| TCONS_00070783-exon-scaffold_58-1510915933:413866..414031 | TCONS_00070783-exon-scaffold_58-1510915933:413866..414031 | Clytia hemisphaerica | exon |
| TCONS_00070783-exon-scaffold_58-1575043694:413866..414031 | TCONS_00070783-exon-scaffold_58-1575043694:413866..414031 | Clytia hemisphaerica | exon |
| TCONS_00070783-exon-scaffold_58-1491911889:414413..415042 | TCONS_00070783-exon-scaffold_58-1491911889:414413..415042 | Clytia hemisphaerica | exon |
| TCONS_00070783-exon-scaffold_58-1510915933:414413..415042 | TCONS_00070783-exon-scaffold_58-1510915933:414413..415042 | Clytia hemisphaerica | exon |
| TCONS_00070783-exon-scaffold_58-1575043694:414413..415042 | TCONS_00070783-exon-scaffold_58-1575043694:414413..415042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:413866..415042 + |
Blast
The following BLAST results are available for this feature:
|
