TCONS_00070780 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070780
Unique NameTCONS_00070780
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length979

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070780 ID=TCONS_00070780|Name=TCONS_00070780|organism=Clytia hemisphaerica|type=transcript|length=979bp
TTGCCTTGTTTTCCCATGCGTGCAGTTCTACCAACTCGATGTATCAGATC
AGTAACATTCTTCGCAAAATCTAACAGTAGGACAACATCCACATCTTGGA
AATCAAGTCCTCTAGCTGAGACATCCGTCGTAATAAGTATACATTGTCTT
GATTTATTAAAATAATCCAAAGAAGTCAGACGGTCATCTCTTGAAACGTC
ACGATGTAAAAGTAACAAGCTATCAGTCCATCTCTTCTGAAAAAGTAACA
ATTGTTCTGGGAATgtgtctttttcaatagtggaTCCATGGTGCTGATCG
ATCCGAGTCAAATCCTGAAAGAACTTTTGAGCTGTTTTTACAGTATCAAC
GAAAACGAGCATTTTGAAATTCTCAGTACCAAGCTGTGAGACAGCTTTAA
CGAAATATTTTAACTTGTTTCCTCTATCAACATCCATATAAATCATATCT
AGCCTGGACAGCATCATGTGAGCTTCGTCTCCTCGAACCATCTGTATATC
CGGAacccaatgtcgtatatatgtCATGGCCTTACGTGATTTCTTGACCT
CAGAATCAGGCATGGTCGCACCAACAAAAACGAACTGTCGATCGTGGTCA
AACGTCTTATTCTCCATATCCAACATATGATTCATAAGACGAAACAAAGG
ATCCTTACGACCATGTTTCCCGATTCGTTTATCGATTAAAATATCAGCTT
CATCAATAATGATCGTTTCCGTTTCGTTCAAAACATTATAAGGGTAGGTG
GAGAGGGCGTGTGGTGTTGTCACAACAACATCTGTATTCTTCAAACGCAT
TGGAATATCACTGGTGACTAAAGAAACGTTCACTCCTAACATAGACCGAA
AGACATCTCCAACCTTCAAAAAAAAGAGATGTGATGATAAAAGACCAAGA
CCAAAAAGCGATATAAATTAGTAATTTTTGGTTTAGTCAGCCAATCATGC
CAAGACAACATTAAAACCTTAAAAGCTTA
Run BLAST on NCBI

transcript from alignment at scaffold_58:260675..261721+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070780 ID=TCONS_00070780|Name=TCONS_00070780|organism=Clytia hemisphaerica|type=transcript|length=1047bp|location=Sequence derived from alignment at scaffold_58:260675..261721+ (Clytia hemisphaerica)
TTGCCTTGTTTTCCCATGCGTGCAGTTCTACCAACTCGATGTATCAGATC
AGTAACATTCTTCGCAAAATCTAACAGTAGGACAACATCCACATCTTGGA
AATCAAGTCCTCGAGCTGAGACATCCGTCGTAATAAGTATACATTGTATT
GATTTATNACATCTTGGAAATCAAGTCCTCTAGCTGAGACATCCGTCGTA
ATAAGTATACATTGTCTTGATTTATTAAAATAATCCAAAGAAGTCAGACG
GTCATCTCTTGAAACGTCACGATGTAAAAGTAACAAGCTATCAGTCCATC
TCTTCTGAAAAAGTAACAATTGTTCTGGGAATgtgtctttttcaatagtg
gaTCCATGGTGCTGATCGATCCGAGTCAAATCCTGAAAGAACTTTTGAGC
TGTTTTTACAGTATCAACGAAAACGAGCATTTTGAAATTCTCAGTACCAA
GCTGTGAGACAGCTTTAACGAAATATTTTAACTTGTTTCCTCTATCAACA
TCCATATAAATCATATCTAGCCTGGACAGCATCATGTGAGCTTCGTCTCC
TCGAACCATCTGTATATCCGGAacccaatgtcgtatatatgtCATGGCCT
TACGTGATTTCTTGACCTCAGAATCAGGCATGGTCGCACCAACAAAAACG
AACTGTCGATCGTGGTCAAACGTCTTATTCTCCATATCCAACATATGATT
CATAAGACGAAACAAAGGATCCTTACGACCATGTTTCCCGATTCGTTTAT
CGATTAAAATATCAGCTTCATCAATAATGATCGTTTCCGTTTCGTTCAAA
ACATTATAAGGGTAGGTGGAGAGGGCGTGTGGTGTTGTCACAACAACATC
TGTATTCTTCAAACGCATTGGAATATCACTGGTGACTAAAGAAACGTTCA
CTCCTAACATAGACCGAAAGACATCTCCAACCTTCAAAAAAAAGAGATGT
GATGATAAAAGACCAAGACCAAAAAGCGATATAAATTAGTAATTTTTGGT
TTAGTCAGCCAATCATGCCAAGACAACATTAAAACCTTAAAAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044045XLOC_044045Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070780-exon-scaffold_58-1491911889:260675..260766TCONS_00070780-exon-scaffold_58-1491911889:260675..260766Clytia hemisphaericaexon
TCONS_00070780-exon-scaffold_58-1510915933:260675..260766TCONS_00070780-exon-scaffold_58-1510915933:260675..260766Clytia hemisphaericaexon
TCONS_00070780-exon-scaffold_58-1575043694:260675..260766TCONS_00070780-exon-scaffold_58-1575043694:260675..260766Clytia hemisphaericaexon
TCONS_00070780-exon-scaffold_58-1491911889:260835..261721TCONS_00070780-exon-scaffold_58-1491911889:260835..261721Clytia hemisphaericaexon
TCONS_00070780-exon-scaffold_58-1510915933:260835..261721TCONS_00070780-exon-scaffold_58-1510915933:260835..261721Clytia hemisphaericaexon
TCONS_00070780-exon-scaffold_58-1575043694:260835..261721TCONS_00070780-exon-scaffold_58-1575043694:260835..261721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_58supercontigscaffold_58:260675..261721 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.6587	11.7295	5.55056	3.71919	1.59049	2.94402	5.16743	5.92036	3.07754	1.98159	0.944126	1.37789	3.26255	1.80187	2.13236	1.97622	2.39399	2.90507	1.02774	0.833224	2.15825	2.79256	8.90952	8.97863	1.29793	3.47088	2.38088	2.61873	7.28075	4.9114
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070780 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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