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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070779 ID=TCONS_00070779|Name=TCONS_00070779|organism=Clytia hemisphaerica|type=transcript|length=1865bp
ATCGATTTAAAAGATCAATGCTCTAAAATGCTTTCCGAACAAAcaattat
aaaattataaagtaaatcatatcaaaataaaattcgacAACTATCAACGG
TTGAAAGTTTCAAACAAGACACCTGAGAATAGAAGGAATCCTACTAAAGG
GTGTATTAACCCCGGTATAAtaactgaaaataaaacattcaAATAATCAC
TGACATAATTTTGGCGAGTTCTCGCTCATTCATTCGACGTTCATTTTGTC
CGATGCCGAATATTTGTAAATAACGCTTAATAAAACTGTCCGGTATTTGT
CTGATGGTGTTGCATTACGGAAATTCTTGACCAGGCTCTGGTGGAATAGG
TGTTGGATTATAATGCTCTTTAAATCCTATCAATTCGTTCTTCAAACGTT
TCGGCAAAGGCAATTCATCTATCTCCGCACCAGTAGAGAATAAACTGCTA
ACNCTTCAAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCACCAGTAG
AGCATAAACTGCTAACATAATCCCGACATAGACCGAAAAGCGTGATCTCA
GGGATAGGCGCACGATAAACATTCAGGTAATAATCACTTTCCATATCCTC
AACGTATTCACCATTTTCGTTAACATGAGGCACGATAATAAACTTTCGCC
AAAAAAGAATTTGGTGTGAATTAAACCAGATATCTACTGTACGAAAAAGG
TCCCTACCATCAACTTCCGGCATTTTAAAAGAATATATCAAACATTCTTT
CTCAATATTGAACATATAAGATGTAAACTCGTTCGTAATAAACAAATGGT
TGGCCACAAAATTCACACAATAAGGGTACTTGATTTGCTTTTGCTTATAA
TGCAATTTCGACCAAACACCAAATTGCGataatttgaatttcttcttcGG
TATGAAATTTCGATCATCGACGAGTGAAAATTCTTCGAAAAATGTATCAA
TATGTAGTATGTGATGTTTGTAAGTTAGCAACATTTGATCTCCAGTTCCT
GGTTGCTTATAGAAAAACCAAGAATTAGAGCCCAGTCTCTCACAAGCGAT
TTTCGTTGAATATATCTTCCGAAATGGTACCACAGAGAAACACATAAAAA
AATTACCCTCTGAAGGAGAATCGGTAATAATGATGAGTTTCTCTCCATTA
CAAACAAACTGACAATCTAAAACTTTATTTGTTTTATAAACCTCCAGACG
TGTCCTTGTAATAAATTTAACTTTGACAGTTTGACCAGGGGTTAAAACAA
CTTGAATGAGATCTATGGTCAGATAAGAGAAAGCTGTCCGCGAATTACCA
ACGTATGACTGAATAATCGCTACGAGCTCATTCTCCAAAGACATACAAAT
TTTAATCGGCGAATCAGGGCTATGTTGACATTCATCCAATATCAATGTTC
CTTCATTCAAATAACCATGCCCATTCGTAATGCGCATGACATTAATATGA
ACTGCAAATCTATTTCTCGAAAACAAAACGCAATGCGTCCGATCAGGTAG
caaaattttattatcaaatgATTTCAATCCATCAATATTATCGATTTCTA
TGACGTCACTCTTTCGAAATTCGTCATCAAATTTGTAATCGTATATTCGA
GTCACGTGACCATCTGAATACTGATCCACCAATGAAATTGCAGCATTATT
CTGACCAATCAGAGTGACATCACTACcatgaaattcatcaaaatattgag
ATGATGTCGGTGTTAGAATATCTTTCAAATGCCGTGTTATGGATGAGAAT
CCTGTAGCTCTAGCATCAGGGAGCAATGAGATTTCTTTGATAGGTTTCTT
TGGTGTCAGAAATAATCTGTTTTCATTGTCTGATATCATTTTATTATTGT
TTAAAGTTTATATCT Run BLAST on NCBI transcript from alignment at scaffold_58:257240..259311+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070779 ID=TCONS_00070779|Name=TCONS_00070779|organism=Clytia hemisphaerica|type=transcript|length=2072bp|location=Sequence derived from alignment at scaffold_58:257240..259311+ (Clytia hemisphaerica)
ATCGATTTAAAAGATCAATGCTCTAAAATGCTTTCCGAACAAAcaattat
aaaattataaagtaaatcatatcaaaataaaattcgacAACTATCAACGG
TTGAAAGTTTCAAACAAGACACCTGAGAATAGAAGGAATCCTACTAAAGG
GTGTATTAACCCCGGTATAAtaactgaaaataaaacattcaAATAATCAC
TGACATAATTTTGGCGAGTTCTCGCTCATTCATTCGACGTTCATTTTGTC
CGATGCCGAATATTTGTAAATAACGCTTAATAAAACTGTCCGGTATTTGT
CTGATGGTGTTGCATTACGGAAATTCTTGACATCGGACCATTGTTACCTG
TGAGAAAAAGGGAAGTTTTAAGACCGGAAAAACACACTGGTTCACGTCCG
GGGTTTGGACTGTTTGGTGGtgaaaaatttccatacgaaAGCGGACATTT
GCGTCCGTATCTCCCGTAAGTCAAGTGCGTCGGCTTCGCCTGGGATCCAG
CCTGCAGCGTCTTCCTTCAAGACGACTCTCATCATGACCAGGCTCTGGTG
GAATAGGTGTTGGATTATAATGCTCTTTAAATCCTATCAATTCGTTCTTC
AAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCACCAGTAGAGAATAA
ACTGCTAACNCTTCAAACGTTTCGGCAAAGGCAATTCATCTATCTCCGCA
CCAGTAGAGCATAAACTGCTAACATAATCCCGACATAGACCGAAAAGCGT
GATCTCAGGGATAGGCGCACGATAAACATTCAGGTAATAATCACTTTCCA
TATCCTCAACGTATTCACCATTTTCGTTAACATGAGGCACGATAATAAAC
TTTCGCCAAAAAAGAATTTGGTGTGAATTAAACCAGATATCTACTGTACG
AAAAAGGTCCCTACCATCAACTTCCGGCATTTTAAAAGAATATATCAAAC
ATTCTTTCTCAATATTGAACATATAAGATGTAAACTCGTTCGTAATAAAC
AAATGGTTGGCCACAAAATTCACACAATAAGGGTACTTGATTTGCTTTTG
CTTATAATGCAATTTCGACCAAACACCAAATTGCGataatttgaatttct
tcttcGGTATGAAATTTCGATCATCGACGAGTGAAAATTCTTCGAAAAAT
GTATCAATATGTAGTATGTGATGTTTGTAAGTTAGCAACATTTGATCTCC
AGTTCCTGGTTGCTTATAGAAAAACCAAGAATTAGAGCCCAGTCTCTCAC
AAGCGATTTTCGTTGAATATATCTTCCGAAATGGTACCACAGAGAAACAC
ATAAAAAAATTACCCTCTGAAGGAGAATCGGTAATAATGATGAGTTTCTC
TCCATTACAAACAAACTGACAATCTAAAACTTTATTTGTTTTATAAACCT
CCAGACGTGTCCTTGTAATAAATTTAACTTTGACAGTTTGACCAGGGGTT
AAAACAACTTGAATGAGATCTATGGTCAGATAAGAGAAAGCTGTCCGCGA
ATTACCAACGTATGACTGAATAATCGCTACGAGCTCATTCTCCAAAGACA
TACAAATTTTAATCGGCGAATCAGGGCTATGTTGACATTCATCCAATATC
AATGTTCCTTCATTCAAATAACCATGCCCATTCGTAATGCGCATGACATT
AATATGAACTGCAAATCTATTTCTCGAAAACAAAACGCAATGCGTCCGAT
CAGGTAGcaaaattttattatcaaatgATTTCAATCCATCAATATTATCG
ATTTCTATGACGTCACTCTTTCGAAATTCGTCATCAAATTTGTAATCGTA
TATTCGAGTCACGTGACCATCTGAATACTGATCCACCAATGAAATTGCAG
CATTATTCTGACCAATCAGAGTGACATCACTACcatgaaattcatcaaaa
tattgagATGATGTCGGTGTTAGAATATCTTTCAAATGCCGTGTTATGGA
TGAGAATCCTGTAGCTCTAGCATCAGGGAGCAATGAGATTTCTTTGATAG
GTTTCTTTGGTGTCAGAAATAATCTGTTTTCATTGTCTGATATCATTTTA
TTATTGTTTAAAGTTTATATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070779-exon-scaffold_58-1491911889:257240..257570 | TCONS_00070779-exon-scaffold_58-1491911889:257240..257570 | Clytia hemisphaerica | exon |
| TCONS_00070779-exon-scaffold_58-1510915933:257240..257570 | TCONS_00070779-exon-scaffold_58-1510915933:257240..257570 | Clytia hemisphaerica | exon |
| TCONS_00070779-exon-scaffold_58-1575043694:257240..257570 | TCONS_00070779-exon-scaffold_58-1575043694:257240..257570 | Clytia hemisphaerica | exon |
| TCONS_00070779-exon-scaffold_58-1491911889:257778..259311 | TCONS_00070779-exon-scaffold_58-1491911889:257778..259311 | Clytia hemisphaerica | exon |
| TCONS_00070779-exon-scaffold_58-1510915933:257778..259311 | TCONS_00070779-exon-scaffold_58-1510915933:257778..259311 | Clytia hemisphaerica | exon |
| TCONS_00070779-exon-scaffold_58-1575043694:257778..259311 | TCONS_00070779-exon-scaffold_58-1575043694:257778..259311 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:257240..259311 + |
Blast
The following BLAST results are available for this feature:
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