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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070768 ID=TCONS_00070768|Name=TCONS_00070768|organism=Clytia hemisphaerica|type=transcript|length=1708bp
gattttcggattcgaatgttttcaaaacattcgagaGAAACAAGTCAGAA
AACGCAGCAAACGCTGgtaacaaaaaatattcaaacgaTAACTGTCAACC
TACATCACCTCATCTCCATCTCAATACGATCAATATTTAAATTGTGATCA
GAATGATATCTTTGATATGGCTGTTTATTTTCAGTTTATTGACAGGCTTT
GCGGCACAAGAAAGAGACGTTTTACTTGTTGAAAAGGAAACCAACCCTCG
AAAGTCAGTATGTGCTGCTACCGTTCAACAAAGACCTATCAAATATTTCA
AGGAAACAGCCTTTTGGCCTACACTAACGTTCTGCAGTCCAGATGAATGG
GTGTACTGTAAAAAATACAACCTCTTGGAAATAGATTCTGTCATAAAAAG
AAAAACAGCACACCGATTCCtcaaaattcaactaaaagATACTAAAAGCG
TAATAAACCAATCCACACCAAGAACAATATCTGTGAGTTTGAGGCGAGAG
AACTCTGAAGAAGACTGGCTTAACGTTGACGTTTGTGGTGATTTAATTTG
TATTCAAAAAGAGTAAAAAGAGTTACGACTAAAAGGTACTGGAATTCCTT
TCAATGTCATTATCTAAACACTGATTTGCGTCACCGACGTCTAAGTCCAG
TTTTTGGACCATTTCAGGGtccatttttattcaatttataaaGAATGTGT
GTACAGTagttcatttaattttttaacatcATGATCAactagtttaggta
taaacttatttctttttttatgatttttgttggcgaatAAACTAATGATc
aaccaggataatcacgacgacggacgaaaaatttaataggctagtgaaaa
tacgaaatttgattggttgaaactcactagcctgttaaatttttgttcgt
cgtcgtgatttgaCCGATCTACTTAACTTCACtattgtattcatgatatt
caccaTGTAATATTTTATACGGAAAAACCCAAAATAGCccgggcgtttgc
caccagtttcattgtttaaattcaaaattagtggcaaacaccCGGTCTTT
TTCGGCTGCTTccgtaaaacattttcatgaaTATTAcggatatttgaaaa
aaaaaagttgttacaaaagaaaaaatttaacgtttcaaaaatttacaaaa
cttAGATCCATGTTAACCATANacgacgacggacgaaaaatttaataggc
tagtgaaaatacgaaatttgattggttgaaactcactagcctgttaaatt
tttgttcgtcgtcgtgatttgaCCGATCTACTTAACTTCACTATTGTATT
CATAATATTCACgatgtaatgttttatacggaaaaACCCAAAATAGCccg
ggcgtttgccaccagtttcattgtttaaattcaaaatgagtGGCAAACAC
CCGGTCTTTTTCGGCTGCTTccgtaaaacattttcatgaaTATCACagat
atatgaaaaaaataaagttgttacaaaagaaaaatgttaacgtttcaaaa
tttacaaaacttAGATCTATGTTAACCATGTGTTCTGGCATATTTGTGTT
CTGCTTAGTATTGGTTTGATTTTTGTGCCAAAATTTAAGGACTTCTCCAT
TCTCGGAAGTGTAAAAATGCTTGTGCTCCTAATCCAACCACTGAGAAAAA
TCCAAAAGCCtgtaaaagagaaaaaactaattaatgcaATCCGTTTAGTT
GGGTTAGT Run BLAST on NCBI protein sequence of TCONS_00070768-protein >TCONS_00070768-protein ID=TCONS_00070768-protein|Name=TCONS_00070768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=137bp
MISLIWLFIFSLLTGFAAQERDVLLVEKETNPRKSVCAATVQQRPIKYFK
ETAFWPTLTFCSPDEWVYCKKYNLLEIDSVIKRKTAHRFLKIQLKDTKSV
INQSTPRTISVSLRRENSEEDWLNVDVCGDLICIQKE Run BLAST on NCBI transcript from alignment at scaffold_58:115776..118397+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070768 ID=TCONS_00070768|Name=TCONS_00070768|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at scaffold_58:115776..118397+ (Clytia hemisphaerica)
gattttcggattcgaatgttttcaaaacattcgagaGAAACAAGTCAGAA
AACGCAGCAAACGCTGgtaacaaaaaatattcaaacgaTAACTGTCAACC
TACATCACCTCATCTCCATCTCAATACGATCAATATTTAAATTGTGATCA
GAATGATATCTTTGATATGGCTGTTTATTTTCAGTTTATTGACAGGCTTT
GCGGCACAAGAAAGAGACGTTTTACTTGTTGAAAAGGAAACCAACCCTCG
AAAGTCAGTATGTGCTGCTACCGTTCAACAAAGACCTATCAAATATTTCA
AGGAAACAGCCTTTTGGCCTACACTAACGTTCTGCAGTCCAGATGAATGG
GTGTACTGTAAAAAATACAACCTCTTGGAAATAGATTCTGTCATAAAAAG
TgagtatccaaattgttttattgttttctaCCTGGTGGGGTGTACTCCCG
TGACGGCGGCTATGGCGGCGGGGAGCGCACTTAGGCAAACTTGGGTAccg
ggacgtgccgctggtcagtgTTTCTTTTTCAGGCTCTGAAGATCTGACAG
GgttccaaatttactaatttctAAAATATGTATCAGCCAGGGTCaacttt
tggtaatttttgaaaatttgtggagtggaaattagaaatttttcgtctac
ttttagtcattttggccacttttcacggtgaaaatgggaaaatttatCTA
CTTAtcagggaaaaaaatgtcggagtttatTTAgccggggaaaaatttcg
tcacctggaggcattttcgtcacttttccccgaccaaaatttcaaatttg
tcacttttcccctacgcaatttacaatttagtcactttcaacCAGTTAAA
TTGttcaaatgaaatggtttccttcactagctcgaaaaaagatcttgtaa
taattcgacgtttaaagtaCTAATTTCCGTTTTTGtacagaaaattaaaa
atcactAATTTCGTTTATTATAGGAAAAACAGCACACCGATTCCTCAAAA
CTCAACTAAAAGATACTAAAAGCGCTATAAACCAATCCACACCAAGAACA
ATATCTGTGAGTTTGAGGCGAAAGAACTCTGAAGAAGACTGGCTTAACGT
TGACGTTTGTGGTGATTTAATTTGTATTCAAAAAGAGTAAAAAGAGTTAC
GACTAAAAGGTACTGGAATTCCTTTCAATGTCATTATCTAAAAACACTGA
TTTGCGTCACCGACGTCTAAGTCCAGTTTTTGGACCATTTCAGGGTTNCG
TTTAAAGTACTAATTTCCGTTTTTGtacagaaaattaaaaatcactAATT
TCGTTTATTATAGGAAAAACAGCACACCGATTCCtcaaaattcaactaaa
agATACTAAAAGCGTAATAAACCAATCCACACCAAGAACAATATCTGTGA
GTTTGAGGCGAGAGAACTCTGAAGAAGACTGGCTTAACGTTGACGTTTGT
GGTGATTTAATTTGTATTCAAAAAGAGTAAAAAGAGTTACGACTAAAAGG
TACTGGAATTCCTTTCAATGTCATTATCTAAACACTGATTTGCGTCACCG
ACGTCTAAGTCCAGTTTTTGGACCATTTCAGGGtccatttttattcaatt
tataaaGAATGTGTGTACAGTagttcatttaattttttaacatcATGATC
Aactagtttaggtataaacttatttctttttttatgatttttgttggcga
atAAACTAATGATcaaccaggataatcacgacgacggacgaaaaatttaa
taggctagtgaaaatacgaaatttgattggttgaaactcactagcctgtt
aaatttttgttcgtcgtcgtgatttgaCCGATCTACTTAACTTCACtatt
gtattcatgatattcaccaTGTAATATTTTATACGGAAAAACCCAAAATA
GCccgggcgtttgccaccagtttcattgtttaaattcaaaattagtggca
aacaccCGGTCTTTTTCGGCTGCTTccgtaaaacattttcatgaaTATTA
cggatatttgaaaaaaaaaagttgttacaaaagaaaaaatttaacgtttc
aaaaatttacaaaacttAGATCCATGTTAACCATANacgacgacggacga
aaaatttaataggctagtgaaaatacgaaatttgattggttgaaactcac
tagcctgttaaatttttgttcgtcgtcgtgatttgaCCGATCTACTTAAC
TTCACTATTGTATTCATAATATTCACgatgtaatgttttatacggaaaaA
CCCAAAATAGCccgggcgtttgccaccagtttcattgtttaaattcaaaa
tgagtGGCAAACACCCGGTCTTTTTCGGCTGCTTccgtaaaacattttca
tgaaTATCACagatatatgaaaaaaataaagttgttacaaaagaaaaatg
ttaacgtttcaaaatttacaaaacttAGATCTATGTTAACCATGTGTTCT
GGCATATTTGTGTTCTGCTTAGTATTGGTTTGATTTTTGTGCCAAAATTT
AAGGACTTCTCCATTCTCGGAAGTGTAAAAATGCTTGTGCTCCTAATCCA
ACCACTGAGAAAAATCCAAAAGCCtgtaaaagagaaaaaactaattaatg
caATCCGTTTAGTTGGGTTAGT Coding sequence (CDS) from alignment at scaffold_58:115776..118397+ >TCONS_00070768 ID=TCONS_00070768|Name=TCONS_00070768|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_58:115776..118397+ (Clytia hemisphaerica)
ATGATATCTTTGATATGGCTGTTTATTTTCAGTTTATTGACAGGCTTTGC
GGCACAAGAAAGAGACGTTTTACTTGTTGAAAAGGAAACCAACCCTCGAA
AGTCAGTATGTGCTGCTACCGTTCAACAAAGACCTATCAAATATTTCAAG
GAAACAGCCTTTTGGCCTACACTAACGTTCTGCAGTCCAGATGAATGGGT
GTACTGTAAAAAATACAACCTCTTGGAAATAGATTCTGTCATAAAAAGAA
AAACAGCACACCGATTCCtcaaaattcaactaaaagATACTAAAAGCGTA
ATAAACCAATCCACACCAAGAACAATATCTGTGAGTTTGAGGCGAGAGAA
CTCTGAAGAAGACTGGCTTAACGTTGACGTTTGTGGTGATTTAATTTGTA
TTCAAAAAGAGTAAATGATATCTTTGATATGGCTGTTTATTTTCAGTTTA
TTGACAGGCTTTGCGGCACAAGAAAGAGACGTTTTACTTGTTGAAAAGGA
AACCAACCCTCGAAAGTCAGTATGTGCTGCTACCGTTCAACAAAGACCTA
TCAAATATTTCAAGGAAACAGCCTTTTGGCCTACACTAACGTTCTGCAGT
CCAGATGAATGGGTGTACTGTAAAAAATACAACCTCTTGGAAATAGATTC
TGTCATAAAAAGAAAAACAGCACACCGATTCCtcaaaattcaactaaaag
ATACTAAAAGCGTAATAAACCAATCCACACCAAGAACAATATCTGTGAGT
TTGAGGCGAGAGAACTCTGAAGAAGACTGGCTTAACGTTGACGTTTGTGG
TGATTTAATTTGTATTCAAAAAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070768-exon-scaffold_58-1491911889:115776..116174 | TCONS_00070768-exon-scaffold_58-1491911889:115776..116174 | Clytia hemisphaerica | exon |
| TCONS_00070768-exon-scaffold_58-1510915933:115776..116174 | TCONS_00070768-exon-scaffold_58-1510915933:115776..116174 | Clytia hemisphaerica | exon |
| TCONS_00070768-exon-scaffold_58-1575043694:115776..116174 | TCONS_00070768-exon-scaffold_58-1575043694:115776..116174 | Clytia hemisphaerica | exon |
| TCONS_00070768-exon-scaffold_58-1491911889:117089..118397 | TCONS_00070768-exon-scaffold_58-1491911889:117089..118397 | Clytia hemisphaerica | exon |
| TCONS_00070768-exon-scaffold_58-1510915933:117089..118397 | TCONS_00070768-exon-scaffold_58-1510915933:117089..118397 | Clytia hemisphaerica | exon |
| TCONS_00070768-exon-scaffold_58-1575043694:117089..118397 | TCONS_00070768-exon-scaffold_58-1575043694:117089..118397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_58 | supercontig | scaffold_58:115776..118397 + |
Blast
The following BLAST results are available for this feature:
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