TCONS_00070752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070752
Unique NameTCONS_00070752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070752 ID=TCONS_00070752|Name=TCONS_00070752|organism=Clytia hemisphaerica|type=transcript|length=590bp
ACTACTGATGTATGGATGGCACTACCATAAAATCTCAGGAGTTTTTCGGT
TAAATCTTTGCTCTACTTACAAATATATGAAACCCGATATGAAACCCTTG
TCAGAATCATGCTTTCGTTATCCATTCTTATTCAAGCTTATACAGTCCTA
ATGGGCATCAATCATTTATATCACTTCTattaaaattgcatcgaaacTGT
ATACAAAATCCCATAGAAACGTAtgcaagttttttataagaacaaagtat
ataaggaCTTCGATGGCTTcgaaaggcttcgatggccaaaatattaagta
aattttaaggctttgcagaccattaaacacctattttcttaggaaaatgg
acaaaaacactcacaaaatggtgaaaataagaaaatattaagaacatttt
gaggcttaaaattgaaaaaattaagaacatctgaaggctatccaaaaatg
ttggatgttcttgtaaaaaaaacatataacatGTGTATAATAATTGCATT
GAAAACGAAAACGTCAAAATGCATGGTATTCGTTTAGCATGgagtaagaa
aaatattttaacacgCAGCTTGTTTAGTTGAATGCATATT
Run BLAST on NCBI

transcript from alignment at scaffold_57:721237..721826

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070752 ID=TCONS_00070752|Name=TCONS_00070752|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at scaffold_57:721237..721826 (Clytia hemisphaerica)
AATATGCATTCAACTAAACAAGCTGcgtgttaaaatatttttcttactcC
ATGCTAAACGAATACCATGCATTTTGACGTTTTCGTTTTCAATGCAATTA
TTATACACatgttatatgttttttttacaagaacatccaacatttttgga
tagccttcagatgttcttaattttttcaattttaagcctcaaaatgttct
taatattttcttattttcaccattttgtgagtgtttttgtccattttcct
aagaaaataggtgtttaatggtctgcaaagccttaaaatttacttaatat
tttggccatcgaagcctttcgAAGCCATCGAAGtccttatatactttgtt
cttataaaaaacttgcaTACGTTTCTATGGGATTTTGTATACAgtttcga
tgcaattttaatAGAAGTGATATAAATGATTGATGCCCATTAGGACTGTA
TAAGCTTGAATAAGAATGGATAACGAAAGCATGATTCTGACAAGGGTTTC
ATATCGGGTTTCATATATTTGTAAGTAGAGCAAAGATTTAACCGAAAAAC
TCCTGAGATTTTATGGTAGTGCCATCCATACATCAGTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044028XLOC_044028Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070752-exon-scaffold_57-1491911889:721237..721826TCONS_00070752-exon-scaffold_57-1491911889:721237..721826Clytia hemisphaericaexon
TCONS_00070752-exon-scaffold_57-1510915933:721237..721826TCONS_00070752-exon-scaffold_57-1510915933:721237..721826Clytia hemisphaericaexon
TCONS_00070752-exon-scaffold_57-1575043694:721237..721826TCONS_00070752-exon-scaffold_57-1575043694:721237..721826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:721237..721826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186235	0	0.105432	0	2.8882	0.793843	1.07745	1.45701	0.47081	0.291587	0.0943404	0.992251	0.185788	0.192943	0	0.0567431	0	0.214945	0.395944	0.62149	0.990343	0.922196	0.106767	0.388265	0.199952	0.0892263	0.127682	0.681331	0.103353	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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