TCONS_00070741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070741
Unique NameTCONS_00070741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070741 ID=TCONS_00070741|Name=TCONS_00070741|organism=Clytia hemisphaerica|type=transcript|length=391bp
GCTTGGAAAGCCAGCCATTCTATAAAAACCTTGCTTCATCTCTGTCTTTT
GTTGGGCAGTGGTAGGGAATAAAATGAATTGGTTTTTCTTGCGATTGAGA
GCTTGACAAGATTGGGGAACAGTCCTTGAAACAGTCCCAGCTTGCACACA
ACGTCAAGACAACGTCTATCTAACATTGATAatgtccaaataacgttatt
tgaacgttaaaacaacgttgtgtgccagctggggttgGTTTATCCACTCC
AATAACATCTCCCACAACTTGTTGGAAACTTCCACATGccaaaaacttca
aagaaatcAACACTTGACTTTCAACAGACAAAGTGTGGTTTCTTTGTGTA
GGTCTTTGCAGATTTTGTCTGAGAAGATTGGTTAAAAACAC
Run BLAST on NCBI

transcript from alignment at scaffold_57:535188..535578

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070741 ID=TCONS_00070741|Name=TCONS_00070741|organism=Clytia hemisphaerica|type=transcript|length=391bp|location=Sequence derived from alignment at scaffold_57:535188..535578 (Clytia hemisphaerica)
GTGTTTTTAACCAATCTTCTCAGACAAAATCTGCAAAGACCTACACAAAG
AAACCACACTTTGTCTGTTGAAAGTCAAGTGTTgatttctttgaagtttt
tggCATGTGGAAGTTTCCAACAAGTTGTGGGAGATGTTATTGGAGTGGAT
AAACcaaccccagctggcacacaacgttgttttaacgttcaaataacgtt
atttggacatTATCAATGTTAGATAGACGTTGTCTTGACGTTGTGTGCAA
GCTGGGACTGTTTCAAGGACTGTTCCCCAATCTTGTCAAGCTCTCAATCG
CAAGAAAAACCAATTCATTTTATTCCCTACCACTGCCCAACAAAAGACAG
AGATGAAGCAAGGTTTTTATAGAATGGCTGGCTTTCCAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044017XLOC_044017Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070741-exon-scaffold_57-1491911889:535188..535578TCONS_00070741-exon-scaffold_57-1491911889:535188..535578Clytia hemisphaericaexon
TCONS_00070741-exon-scaffold_57-1510915933:535188..535578TCONS_00070741-exon-scaffold_57-1510915933:535188..535578Clytia hemisphaericaexon
TCONS_00070741-exon-scaffold_57-1575043694:535188..535578TCONS_00070741-exon-scaffold_57-1575043694:535188..535578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:535188..535578 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.602316	0.206642	0	0.492741	0.811872	0.922585	0.55153	0.249257	1.00732	0.216464	0.636362	1.09006	2.16145	1.60555	0.567052	0.721744	0.890489	0.456486	0.250786	0.249921	0.190919	0	0.235242	0.409665	3.18356	2.81823	1.1411	0.587152	0.23927	0.700732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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