TCONS_00070738 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070738
Unique NameTCONS_00070738
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070738 ID=TCONS_00070738|Name=TCONS_00070738|organism=Clytia hemisphaerica|type=transcript|length=678bp
TACTTACGCTATGGTTGGGATATGAAAAACCTACCAACGATTGTGTTTGT
GGATGCAAGTTCAACGTGAACCATGCCCTTCAATGTAAGGTGGGAGGATT
TATCCATATACGCCATAATGAGTTGGTCAATATTACGGCCAACTTATCAT
CCATCGTATGCAAAGATGTGGAGAAAGAGCCGGTTCTCCAGAAGAAATTC
GATCGTGATCCTGAACTTCGAGCTGACATAATGCTAAGAGGATTTTGGCA
ACGGCAACAGAAGGCATTTCTCGACGTAAGGGTCTTTTCCCTTTTTGCCA
GAAGTTACCAAAGCCAAAATCTTGCTAGCACTATGAAGCAGATGGAGAAA
GAGAAGAAACGAAAATATGTGAAACGAGTCCTTGACCAGGAGAATGGAAC
TTTTACTCCTCTTGCCTTCTCTTCCAATGGTGGAATGAGTAAAGAGACGA
AGCGTTTTTATGGGAGATTAAGCGAACTCATCGCCGAGAAGAATAAATCT
TCTTTATCAGAGACTTCTTTTTTTATAAAAAGAAAACTTTCTTTCAGTTT
AGTAAAATCAAGTGTGGTGTGTCTGCGAGGCTCGAGGTCCTGGAGACGCT
CTTCGCCTTTCAGTAACACGACAGCTGATGCAGAGGCCATAAAtagtttt
tcctcaatttcatgagtctatttttttt
Run BLAST on NCBI

protein sequence of TCONS_00070738-protein

>TCONS_00070738-protein ID=TCONS_00070738-protein|Name=TCONS_00070738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=220bp
LTLWLGYEKPTNDCVCGCKFNVNHALQCKVGGFIHIRHNELVNITANLSS
IVCKDVEKEPVLQKKFDRDPELRADIMLRGFWQRQQKAFLDVRVFSLFAR
SYQSQNLASTMKQMEKEKKRKYVKRVLDQENGTFTPLAFSSNGGMSKETK
RFYGRLSELIAEKNKSSLSETSFFIKRKLSFSLVKSSVVCLRGSRSWRRS
SPFSNTTADAEAINSFSSIS
Run BLAST on NCBI

transcript from alignment at scaffold_57:467487..468164

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070738 ID=TCONS_00070738|Name=TCONS_00070738|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at scaffold_57:467487..468164 (Clytia hemisphaerica)
aaaaaaaatagactcatgaaattgaggaaaaactaTTTATGGCCTCTGCA
TCAGCTGTCGTGTTACTGAAAGGCGAAGAGCGTCTCCAGGACCTCGAGCC
TCGCAGACACACCACACTTGATTTTACTAAACTGAAAGAAAGTTTTCTTT
TTATAAAAAAAGAAGTCTCTGATAAAGAAGATTTATTCTTCTCGGCGATG
AGTTCGCTTAATCTCCCATAAAAACGCTTCGTCTCTTTACTCATTCCACC
ATTGGAAGAGAAGGCAAGAGGAGTAAAAGTTCCATTCTCCTGGTCAAGGA
CTCGTTTCACATATTTTCGTTTCTTCTCTTTCTCCATCTGCTTCATAGTG
CTAGCAAGATTTTGGCTTTGGTAACTTCTGGCAAAAAGGGAAAAGACCCT
TACGTCGAGAAATGCCTTCTGTTGCCGTTGCCAAAATCCTCTTAGCATTA
TGTCAGCTCGAAGTTCAGGATCACGATCGAATTTCTTCTGGAGAACCGGC
TCTTTCTCCACATCTTTGCATACGATGGATGATAAGTTGGCCGTAATATT
GACCAACTCATTATGGCGTATATGGATAAATCCTCCCACCTTACATTGAA
GGGCATGGTTCACGTTGAACTTGCATCCACAAACACAATCGTTGGTAGGT
TTTTCATATCCCAACCATAGCGTAAGTA

Coding sequence (CDS) from alignment at scaffold_57:467487..468164

>TCONS_00070738 ID=TCONS_00070738|Name=TCONS_00070738|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_57:467487..468164 (Clytia hemisphaerica)
tcatgaaattgaggaaaaactaTTTATGGCCTCTGCATCAGCTGTCGTGT
TACTGAAAGGCGAAGAGCGTCTCCAGGACCTCGAGCCTCGCAGACACACC
ACACTTGATTTTACTAAACTGAAAGAAAGTTTTCTTTTTATAAAAAAAGA
AGTCTCTGATAAAGAAGATTTATTCTTCTCGGCGATGAGTTCGCTTAATC
TCCCATAAAAACGCTTCGTCTCTTTACTCATTCCACCATTGGAAGAGAAG
GCAAGAGGAGTAAAAGTTCCATTCTCCTGGTCAAGGACTCGTTTCACATA
TTTTCGTTTCTTCTCTTTCTCCATCTGCTTCATAGTGCTAGCAAGATTTT
GGCTTTGGTAACTTCTGGCAAAAAGGGAAAAGACCCTTACGTCGAGAAAT
GCCTTCTGTTGCCGTTGCCAAAATCCTCTTAGCATTATGTCAGCTCGAAG
TTCAGGATCACGATCGAATTTCTTCTGGAGAACCGGCTCTTTCTCCACAT
CTTTGCATACGATGGATGATAAGTTGGCCGTAATATTGACCAACTCATTA
TGGCGTATATGGATAAATCCTCCCACCTTACATTGAAGGGCATGGTTCAC
GTTGAACTTGCATCCACAAACACAATCGTTGGTAGGTTTTTCATATCCCA
ACCATAGCGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044014XLOC_044014Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070738-proteinTCONS_00070738-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070738-exon-scaffold_57-1491911889:467487..468164TCONS_00070738-exon-scaffold_57-1491911889:467487..468164Clytia hemisphaericaexon
TCONS_00070738-exon-scaffold_57-1510915933:467487..468164TCONS_00070738-exon-scaffold_57-1510915933:467487..468164Clytia hemisphaericaexon
TCONS_00070738-exon-scaffold_57-1575043694:467487..468164TCONS_00070738-exon-scaffold_57-1575043694:467487..468164Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:467487..468164 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0756455	0	0	0.16759	1.93823	2.41834	2.72312	3.09564	1.46614	1.50021	1.91598	2.06556	1.10681	2.14212	0	0.0460962	0.113574	0.407432	0	0.252439	0.219415	0	0	0	1.46191	2.53696	0	0	0.335842	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070738 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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