TCONS_00070735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070735
Unique NameTCONS_00070735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070735 ID=TCONS_00070735|Name=TCONS_00070735|organism=Clytia hemisphaerica|type=transcript|length=717bp
GCTATATCGAAGTAAGTCTGATTAGGTGTATATTGAAACATTGTCATGAC
AACCAAGATGGCGTAAGGAGTCCAGGCTAATAGAAACGAGAATAACATTA
TACCATTAACAATATACATTGCTTGTAtcttttttttagtttctttttgc
atttttgagtTTTGTCCGTTACTCTCGGCGGCAGATTTATTTATTGTCCG
AAATATTTTTGCCGCACTGAAGTAACAAAAGATGGAGATTAGAACAGGGA
AAACGAATGCCGCAAGCGAAAGACATATGTTATAACTTAAAACGTTCACT
GAATGTTCACGTAAATTTAATCCGCATCTGTATCCAGTCTCTGTTTCTTT
ACCGTATTTCGACCACCCGAAAAGCGGAAAAATGCCCCAAGTTAGACCAT
AACACCAAGCGGGTACTAGGAACATGAAGCTGCCGTATTTCGTTTTCTCC
AATTTATCGGACCAGAAGGGAAACACTAAAGCCATATAATATTTCAGCGA
TAAAGCAACGATATGAGCGATCCCAACTACTGCTGTTATGGTGACGATAA
AAGCGGACACGATACATTGTGGAGTTGCTGGCTGTTCTGGCGGATTTGAA
TAGTCGGTCAGTAAATACGGGTATCCGATGAGAGATTGTGCTAAATCGGC
GATGGCCAGGCTTAGGACAATGATGTCGCGGATGTAGAGTTTTGACCAGT
TTGTGAGGAAGATGATG
Run BLAST on NCBI

protein sequence of TCONS_00070735-protein

>TCONS_00070735-protein ID=TCONS_00070735-protein|Name=TCONS_00070735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
IIFLTNWSKLYIRDIIVLSLAIADLAQSLIGYPYLLTDYSNPPEQPATPQ
CIVSAFIVTITAVVGIAHIVALSLKYYMALVFPFWSDKLEKTKYGSFMFL
VPAWCYGLTWGIFPLFGWSKYGKETETGYRCGLNLREHSVNVLSYNICLS
LAAFVFPVLISIFCYFSAAKIFRTINKSAAESNGQNSKMQKETKKKIQAM
YIVNGIMLFSFLLAWTPYAILVVMTMFQYTPNQTYFDI
Run BLAST on NCBI

transcript from alignment at scaffold_57:330150..330866

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070735 ID=TCONS_00070735|Name=TCONS_00070735|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at scaffold_57:330150..330866 (Clytia hemisphaerica)
CATCATCTTCCTCACAAACTGGTCAAAACTCTACATCCGCGACATCATTG
TCCTAAGCCTGGCCATCGCCGATTTAGCACAATCTCTCATCGGATACCCG
TATTTACTGACCGACTATTCAAATCCGCCAGAACAGCCAGCAACTCCACA
ATGTATCGTGTCCGCTTTTATCGTCACCATAACAGCAGTAGTTGGGATCG
CTCATATCGTTGCTTTATCGCTGAAATATTATATGGCTTTAGTGTTTCCC
TTCTGGTCCGATAAATTGGAGAAAACGAAATACGGCAGCTTCATGTTCCT
AGTACCCGCTTGGTGTTATGGTCTAACTTGGGGCATTTTTCCGCTTTTCG
GGTGGTCGAAATACGGTAAAGAAACAGAGACTGGATACAGATGCGGATTA
AATTTACGTGAACATTCAGTGAACGTTTTAAGTTATAACATATGTCTTTC
GCTTGCGGCATTCGTTTTCCCTGTTCTAATCTCCATCTTTTGTTACTTCA
GTGCGGCAAAAATATTTCGGACAATAAATAAATCTGCCGCCGAGAGTAAC
GGACAAAactcaaaaatgcaaaaagaaactaaaaaaaagaTACAAGCAAT
GTATATTGTTAATGGTATAATGTTATTCTCGTTTCTATTAGCCTGGACTC
CTTACGCCATCTTGGTTGTCATGACAATGTTTCAATATACACCTAATCAG
ACTTACTTCGATATAGC

Coding sequence (CDS) from alignment at scaffold_57:330150..330866

>TCONS_00070735 ID=TCONS_00070735|Name=TCONS_00070735|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_57:330150..330866 (Clytia hemisphaerica)
ATCATCTTCCTCACAAACTGGTCAAAACTCTACATCCGCGACATCATTGT
CCTAAGCCTGGCCATCGCCGATTTAGCACAATCTCTCATCGGATACCCGT
ATTTACTGACCGACTATTCAAATCCGCCAGAACAGCCAGCAACTCCACAA
TGTATCGTGTCCGCTTTTATCGTCACCATAACAGCAGTAGTTGGGATCGC
TCATATCGTTGCTTTATCGCTGAAATATTATATGGCTTTAGTGTTTCCCT
TCTGGTCCGATAAATTGGAGAAAACGAAATACGGCAGCTTCATGTTCCTA
GTACCCGCTTGGTGTTATGGTCTAACTTGGGGCATTTTTCCGCTTTTCGG
GTGGTCGAAATACGGTAAAGAAACAGAGACTGGATACAGATGCGGATTAA
ATTTACGTGAACATTCAGTGAACGTTTTAAGTTATAACATATGTCTTTCG
CTTGCGGCATTCGTTTTCCCTGTTCTAATCTCCATCTTTTGTTACTTCAG
TGCGGCAAAAATATTTCGGACAATAAATAAATCTGCCGCCGAGAGTAACG
GACAAAactcaaaaatgcaaaaagaaactaaaaaaaagaTACAAGCAATG
TATATTGTTAATGGTATAATGTTATTCTCGTTTCTATTAGCCTGGACTCC
TTACGCCATCTTGGTTGTCATGACAATGTTTCAATATACACCTAATCAGA
CTTACTTCGATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044011XLOC_044011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070735-proteinTCONS_00070735-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070735-exon-scaffold_57-1491911889:330150..330866TCONS_00070735-exon-scaffold_57-1491911889:330150..330866Clytia hemisphaericaexon
TCONS_00070735-exon-scaffold_57-1510915933:330150..330866TCONS_00070735-exon-scaffold_57-1510915933:330150..330866Clytia hemisphaericaexon
TCONS_00070735-exon-scaffold_57-1575043694:330150..330866TCONS_00070735-exon-scaffold_57-1575043694:330150..330866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:330150..330866 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0681031	0	0.0773618	0.0941806	0.148845	0.718303	0.672467	0.529661	1.09345	0.636798	0.511629	0.278683	0.578829	0.0396564	0.0425574	0.262136	0.107472	0.742394	0.310745	0.472664	0.29642	0.6406	0.873597	0.37491	0.468438	0	0.1022	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00070735 vs. Swiss-Prot (Human)
Match: OPSX (Visual pigment-like receptor peropsin OS=Homo sapiens GN=RRH PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.443e-16
Identity = 51/215 (23.72%), Postives = 97/215 (45.12%), Query Frame = -2 
Query:   36 DIIVLSLAIADLAQSLIGYPYLLTDYSNPPEQPATPQCIVSAFIVTITAVVGIAHIVALSLKYYMALVFPFWSDKLEKTKYGSFMFLVPAWCYGLTWGIFPLFGWSKYGKETETGYRCGLNLREHSVNVLSYNICLSLAAFVFPVLISIFCYFSAA-KIFRTINKSAAESNGQNSKMQKETKKKIQAMYIVNGIMLFSFLLAWTPYAILVVMTMF 677
            + I+++LA+ D+  S IGYP           +     C V A +     +  I  +  +++  Y+ +  P    ++    Y     ++ AW  GL W + P+ GW+ Y  +  TG  C +N R++  + +SY + +    F+ P+ +  +CY+     I         ES  ++   Q +  K       ++ IM+  FL+AW+PY+I+ +   F
Sbjct:   61 NAIIINLAVTDIGVSSIGYPMSAASDLYGSWKFGYAGCQVYAGLNIFFGMASIGLLTVVAVDRYLTICLPDVGRRMTTNTY--IGLILGAWINGLFWALMPIIGWASYAPD-PTGATCTINWRKNDRSFVSYTMTVIAINFIVPLTVMFYCYYHVTLSIKHHTTSDCTESLNRDWSDQIDVTK-------MSVIMICMFLVAWSPYSIVCLWASF 265
The following BLAST results are available for this feature:
BLAST of TCONS_00070735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OPSX7.443e-1623.72Visual pigment-like receptor peropsin OS=Homo sapi... [more]
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