TCONS_00070733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070733
Unique NameTCONS_00070733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070733 ID=TCONS_00070733|Name=TCONS_00070733|organism=Clytia hemisphaerica|type=transcript|length=431bp
TTCGTGTACTTGgcagaaaattttgcgaaaagGGCAAGAATCGTGAAAGA
ATTCGAGAAAGTTCTGCCCTTAAATTAATCACATAATACACCTATCAATC
CTCTTAGCGACACTTTATGCATGTGAGGGGACTGGTAAAGAGATTAGGAC
ATTTCCTTTCAGTCACGGTATCGAACACACAAAAGTAGAGGTTAGACTCC
ACCCTTTGCGCGCGCCGTATGCGATCGCCTCTTTTCAAAAACGCATTTGG
TCCATTCTACCGAAATGGTTGAAAACGTAATTACAAACTTTCATCCTAGG
TGACGTCGAAAATGCACACTGCGCATTCGCATTGGTTAAAAATTTCATCC
CTAGCGGAAAATAAGGATCTTGCTTTAGTAAGGGACAGAAAAACTCTATC
TAAATCTAGTGTATTATATAAGATATCCTgt
Run BLAST on NCBI

transcript from alignment at scaffold_57:312286..312716

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070733 ID=TCONS_00070733|Name=TCONS_00070733|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at scaffold_57:312286..312716 (Clytia hemisphaerica)
acAGGATATCTTATATAATACACTAGATTTAGATAGAGTTTTTCTGTCCC
TTACTAAAGCAAGATCCTTATTTTCCGCTAGGGATGAAATTTTTAACCAA
TGCGAATGCGCAGTGTGCATTTTCGACGTCACCTAGGATGAAAGTTTGTA
ATTACGTTTTCAACCATTTCGGTAGAATGGACCAAATGCGTTTTTGAAAA
GAGGCGATCGCATACGGCGCGCGCAAAGGGTGGAGTCTAACCTCTACTTT
TGTGTGTTCGATACCGTGACTGAAAGGAAATGTCCTAATCTCTTTACCAG
TCCCCTCACATGCATAAAGTGTCGCTAAGAGGATTGATAGGTGTATTATG
TGATTAATTTAAGGGCAGAACTTTCTCGAATTCTTTCACGATTCTTGCCc
ttttcgcaaaattttctgcCAAGTACACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044009XLOC_044009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070733-exon-scaffold_57-1491911889:312286..312716TCONS_00070733-exon-scaffold_57-1491911889:312286..312716Clytia hemisphaericaexon
TCONS_00070733-exon-scaffold_57-1510915933:312286..312716TCONS_00070733-exon-scaffold_57-1510915933:312286..312716Clytia hemisphaericaexon
TCONS_00070733-exon-scaffold_57-1575043694:312286..312716TCONS_00070733-exon-scaffold_57-1575043694:312286..312716Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:312286..312716 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15981	0.15584	0.180945	0.177026	0.862049	1.0218	2.05461	2.11585	1.21202	0.667235	0.161909	0.212865	0.212569	0.331132	0	0	3.83899	0.983711	1.52893	0	0.154513	0.678294	0	0.333174	1.20106	1.68445	0.219131	0.935449	0.177376	0.180718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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