TCONS_00070731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070731
Unique NameTCONS_00070731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070731 ID=TCONS_00070731|Name=TCONS_00070731|organism=Clytia hemisphaerica|type=transcript|length=879bp
TAACGAtccaaatttttcaatattatGAATCGGTTTGTGGACACTGAGGG
TATTTAATAGGTCGTAAATATACCGTAAAAATAGATTATTCTTTAAAGGG
GTAAATGAGTGAAAGTCTTAACAAAATCCTTGAGATATTGCTTAAGGAAA
ACACTTTTTCACAAAACATTCATGAAATATCTAGCATGCTCTACATGTGA
TCGCTTTTCTGTAAAATTCTTTCCACATTCTTCACACTTGGACTTCTAAT
ACCTTATGAACGTTGTTTTCATGTTTACGTCTATCAGCCGTACGTGAAAA
CTCTTTACCACATTCCTTACATTCATAAGGCTTAATACCTCTATGAACAA
ATCTTTGATGTTTTAACATATTCACCTTCTGAAagaaacatttaccacat
tcatTACATTCGAATTCTTTGATCCCTCTATGAATAGCTTCATGTCTTTT
GAGACTTCCTTTATGAAGAAGTTTTCCACAATCGTCACACTGAACTTTAG
GTTTGCTACCGTTATACAACTTCATTggcttttgtttctttgaaaattcc
TTAGTCTTATTATCAATATTCCAGCCGTGTTCATTTATAACTTCATTATA
GCTAGATCGAAAACTGCCTGGATCATCTTGTGAAAATGCTTTACCACATT
CCGTGCTGTATTTCCTGTCGAGCAGGTCATCGGCTAAAGATGAGGAACCA
CCGATTGATTCATTCTTATTCACGCCTTCTCCCAAATCATTTGAATTCAG
TATTTGGTGTTTTACACCAGATAAACCTTCATCCTCAACCTTGAAATCAT
TTCTCaaattaaaattcaattcaTGTTGAAAATCCAAGTTAGGATCATCT
TGTTCTAATTCGATTTTGATGGATTGTTT
Run BLAST on NCBI

protein sequence of TCONS_00070731-protein

>TCONS_00070731-protein ID=TCONS_00070731-protein|Name=TCONS_00070731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
KQSIKIELEQDDPNLDFQHELNFNLRNDFKVEDEGLSGVKHQILNSNDLG
EGVNKNESIGGSSSLADDLLDRKYSTECGKAFSQDDPGSFRSSYNEVINE
HGWNIDNKTKEFSKKQKPMKLYNGSKPKVQCDDCGKLLHKGSLKRHEAIH
RGIKEFECNECGKCFFQKVNMLKHQRFVHRGIKPYECKECGKEFSRTADR
RKHENNVHKVLEVQV
Run BLAST on NCBI

transcript from alignment at scaffold_57:117269..118147

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070731 ID=TCONS_00070731|Name=TCONS_00070731|organism=Clytia hemisphaerica|type=transcript|length=879bp|location=Sequence derived from alignment at scaffold_57:117269..118147 (Clytia hemisphaerica)
AAACAATCCATCAAAATCGAATTAGAACAAGATGATCCTAACTTGGATTT
TCAACAtgaattgaattttaatttGAGAAATGATTTCAAGGTTGAGGATG
AAGGTTTATCTGGTGTAAAACACCAAATACTGAATTCAAATGATTTGGGA
GAAGGCGTGAATAAGAATGAATCAATCGGTGGTTCCTCATCTTTAGCCGA
TGACCTGCTCGACAGGAAATACAGCACGGAATGTGGTAAAGCATTTTCAC
AAGATGATCCAGGCAGTTTTCGATCTAGCTATAATGAAGTTATAAATGAA
CACGGCTGGAATATTGATAATAAGACTAAggaattttcaaagaaacaaaa
gccAATGAAGTTGTATAACGGTAGCAAACCTAAAGTTCAGTGTGACGATT
GTGGAAAACTTCTTCATAAAGGAAGTCTCAAAAGACATGAAGCTATTCAT
AGAGGGATCAAAGAATTCGAATGTAatgaatgtggtaaatgtttctTTCA
GAAGGTGAATATGTTAAAACATCAAAGATTTGTTCATAGAGGTATTAAGC
CTTATGAATGTAAGGAATGTGGTAAAGAGTTTTCACGTACGGCTGATAGA
CGTAAACATGAAAACAACGTTCATAAGGTATTAGAAGTCCAAGTGTGAAG
AATGTGGAAAGAATTTTACAGAAAAGCGATCACATGTAGAGCATGCTAGA
TATTTCATGAATGTTTTGTGAAAAAGTGTTTTCCTTAAGCAATATCTCAA
GGATTTTGTTAAGACTTTCACTCATTTACCCCTTTAAAGAATAATCTATT
TTTACGGTATATTTACGACCTATTAAATACCCTCAGTGTCCACAAACCGA
TTCataatattgaaaaatttggaTCGTTA

Coding sequence (CDS) from alignment at scaffold_57:117269..118147

>TCONS_00070731 ID=TCONS_00070731|Name=TCONS_00070731|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_57:117269..118147 (Clytia hemisphaerica)
AAACAATCCATCAAAATCGAATTAGAACAAGATGATCCTAACTTGGATTT
TCAACAtgaattgaattttaatttGAGAAATGATTTCAAGGTTGAGGATG
AAGGTTTATCTGGTGTAAAACACCAAATACTGAATTCAAATGATTTGGGA
GAAGGCGTGAATAAGAATGAATCAATCGGTGGTTCCTCATCTTTAGCCGA
TGACCTGCTCGACAGGAAATACAGCACGGAATGTGGTAAAGCATTTTCAC
AAGATGATCCAGGCAGTTTTCGATCTAGCTATAATGAAGTTATAAATGAA
CACGGCTGGAATATTGATAATAAGACTAAggaattttcaaagaaacaaaa
gccAATGAAGTTGTATAACGGTAGCAAACCTAAAGTTCAGTGTGACGATT
GTGGAAAACTTCTTCATAAAGGAAGTCTCAAAAGACATGAAGCTATTCAT
AGAGGGATCAAAGAATTCGAATGTAatgaatgtggtaaatgtttctTTCA
GAAGGTGAATATGTTAAAACATCAAAGATTTGTTCATAGAGGTATTAAGC
CTTATGAATGTAAGGAATGTGGTAAAGAGTTTTCACGTACGGCTGATAGA
CGTAAACATGAAAACAACGTTCATAAGGTATTAGAAGTCCAAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044007XLOC_044007Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070731-exon-scaffold_57-1491911889:117269..118147TCONS_00070731-exon-scaffold_57-1491911889:117269..118147Clytia hemisphaericaexon
TCONS_00070731-exon-scaffold_57-1510915933:117269..118147TCONS_00070731-exon-scaffold_57-1510915933:117269..118147Clytia hemisphaericaexon
TCONS_00070731-exon-scaffold_57-1575043694:117269..118147TCONS_00070731-exon-scaffold_57-1575043694:117269..118147Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070731-proteinTCONS_00070731-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:117269..118147 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.5356	0.568	0.299774	0.469251	0.214226	0.28214	0.272312	0.637338	0.312351	0.497438	0.107295	0.211594	0.528249	0.402301	0.180407	0.290406	0.318006	0.366689	0.168867	0.0589024	0.255984	0.149832	0.364281	0.386382	3.69538	2.53696	0.435645	0.154977	0.23509	0.179639
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00070731 vs. Swiss-Prot (Human)
Match: ZNF23 (Zinc finger protein 23 OS=Homo sapiens GN=ZNF23 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 4.065e-21
Identity = 57/133 (42.86%), Postives = 76/133 (57.14%), Query Frame = -1 
Query:  268 TECGKAFSQDDPGSFRSSYNEVINEHGWNIDNKTKEF---SKKQKPMKLYNGSKPKVQCDDCGKLLH-KGSLKRHEAIHRGIKEFECNECGKCFFQKVNMLKHQRFVHRGIKPYECKECGKEFSRTADRRKHE 654
            TECGKAFS    G           E  +  +   K F   S+ ++ ++++ G KP  +C++CGK     G L RH+ IH G K FECNECG+CF  K N+L H R +H G KPY+CKECGK FS  A   +H+
Sbjct:  395 TECGKAFSVK--GKLIQHQRIHTGEKPYECNECGKAFRCNSQFRQHLRIHTGEKP-YECNECGKAFSVNGKLMRHQRIHTGEKPFECNECGRCFTSKRNLLDHHR-IHTGEKPYQCKECGKAFSINAKLTRHQ 523
The following BLAST results are available for this feature:
BLAST of TCONS_00070731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNF234.065e-2142.86Zinc finger protein 23 OS=Homo sapiens GN=ZNF23 PE... [more]
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