TCONS_00070728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070728
Unique NameTCONS_00070728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070728 ID=TCONS_00070728|Name=TCONS_00070728|organism=Clytia hemisphaerica|type=transcript|length=373bp
aggacctccaccggggtaggtccaaaaagtacgGTCTGCTAATGTTTTTT
GGAACAAACTTTAGGTCGATACAAATAATGTCAAATTAATTTCATTGAAC
GCTCAAGGCATAAATAATCTATAAATTATAGTATACAAAGTAATTCTACG
ATTTTtagagtaaaaaaaagtttttatttaatttgaacaAGCTCTGATAT
CATCGAGCACTCTCGGCAGATAGAAGAAAATAGACCTGTGGCAAAGAATC
AGATAAAAACCTGAAACCTCTAAATAGANCCGGCAGATAGAAGAAAATAG
ACTTGTGGCAAACAATCAGATAAAAACCTGAAACCTCTAAATAGActgaa
aatgaattgaaaacaaacctAGA
Run BLAST on NCBI

transcript from alignment at scaffold_57:112475..112847

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070728 ID=TCONS_00070728|Name=TCONS_00070728|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at scaffold_57:112475..112847 (Clytia hemisphaerica)
TCTaggtttgttttcaattcattttcagTCTATTTAGAGGTTTCAGGTTT
TTATCTGATTGTTTGCCACAAGTCTATTTTCTTCTATCTGCCGGNTCTAT
TTAGAGGTTTCAGGTTTTTATCTGATTCTTTGCCACAGGTCTATTTTCTT
CTATCTGCCGAGAGTGCTCGATGATATCAGAGCTtgttcaaattaaataa
aaacttttttttactctaAAAATCGTAGAATTACTTTGTATACTATAATT
TATAGATTATTTATGCCTTGAGCGTTCAATGAAATTAATTTGACATTATT
TGTATCGACCTAAAGTTTGTTCCAAAAAACATTAGCAGACcgtacttttt
ggacctaccccggtggaggtcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044004XLOC_044004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070728-exon-scaffold_57-1491911889:112475..112847TCONS_00070728-exon-scaffold_57-1491911889:112475..112847Clytia hemisphaericaexon
TCONS_00070728-exon-scaffold_57-1510915933:112475..112847TCONS_00070728-exon-scaffold_57-1510915933:112475..112847Clytia hemisphaericaexon
TCONS_00070728-exon-scaffold_57-1575043694:112475..112847TCONS_00070728-exon-scaffold_57-1575043694:112475..112847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:112475..112847 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.79708	3.69377	0.975904	0.556715	1.19529	0.230529	0	0.5397	0.207721	0.225802	0	0.17679	0	1.75222	0	0.146198	0	0.421606	3.79164	5.66086	1.54192	1.2051	2.97226	6.77411	0	0.45596	1.38672	0.953394	2.76838	4.81639
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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