TCONS_00070725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070725
Unique NameTCONS_00070725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1907

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070725 ID=TCONS_00070725|Name=TCONS_00070725|organism=Clytia hemisphaerica|type=transcript|length=1907bp
CTCCTTtcatgcaaaattttttttcgaaaatcgggctccgtcacattcga
gggtttatagttacacatctttgtgcaaaaaatcagaaaaaactaaagag
ccaatctcgagaaaagttggtaacgaacggacggacggacagacaaacgg
acagaggttaatttatatgacctccaccggggtaggtccaaaaatattct
acaacaaaaaaaataaaagggcCATGAGTCATCAGAATCAGAACTTTTta
agttcaaaacaaaacaaattaaccATAATCTTTAATGCCAATAGTTTCAA
GTATAAAATTATCCAATTTTTCCATGAAATCAAAAGGGaacaaaaaagta
gaaaaaatacaTGATCTTCAATACGCCAAATACTCAAAAATATTAGTTTA
TCCAACTTTGTACGAGgctattttcagtttttccatGAAATCAAAAAGGA
ACAGTTCCACTGTTCATGTTGAGGTaactaatttcaaaataaatttcaat
gtTGCTCTGAAAAATGTTTTGCTAAGGTTGTCCttttattgaaacttttt
cCGCATTCGCAACAAGTAAAAGGTCCAGGATGGTCATGTTTCTCTTTAGA
ATGCAGCATAAGAAAATGTCGTCTATCAAATTGTTCTCCACATTCTCCAC
AGCGAAAAGATGTAACACCTTTATGAAGCTTTTCATGCGATATGAGGGAT
CTTTTCCAtgcaaaagatttaccacattctttacATTCAAAAGGTTTGAT
ATTAGAATGAGCACGCATGTGAGCATCGAATCGGCCTTTTCTAAAGTAAG
ATTTATCACACTTACTACACTTGAAACACTTGAAACGTTTAATATCTTCG
TGAATAGTTTTCTTATGAGTCTTAAGGTGAGCTATTGTTGTATAGCTTTT
ACCACAATCTTCACACTTATATTTGTTACCCTCGTGAACTTTACGATGTC
TCGATAGATAAGCATTGTTTGCAAATGACTTACCACATTCCTTGCATTCA
AAAGGTTTGAGACCTGTGTGAATACTTACGTGAACATTAAAACTGTATTT
ACaaggaaacttttttttgcaaGTTTgacatttgaattttttaatttttt
tttggtgttttttattttggtgtGATTTAAGATCTCCTCTTTGAGTAAAT
CTCTCTCCACATTTTTTACATTTATATTCTTttaatttgtgttttccctt
atgCAAAGTGAGTTTTGTGGATGTGAACGACTCACCACATTCTTGATATT
CAATTAATTTGTCAACCTCTTCCTGGATACTATTTTTATGTAATTGCTTT
GAGCTTTCATTTCCAGTTTGAAGGTCTTTTAATCGGTTAAAATCGTTACA
TTGTTCTAAAGATTTTGGGGAGGCTTCATATGTTTTTGTATCGATTTGAA
TTTCAACGTCTGCACTtatttcttctttaattttgatgGCACTTTCTTCA
CCAATTCTAATCTTAAATTTTTGCTCGTGAACATTTCTCTCGATATTTTT
AATGTTATTTTCAACATCATAACGAAGCTTGTCATAATATTGGATTTCAA
CATCTGTACTTATTTCTTCTTTGACTTTGATGGTATTTTCTTCACCAATT
CTAATTCTAAATTTCTCCTCGTGCACATTTTTCTCGatatttttaatgct
tttttccACGTCATCATTGTGAATCTCACCAGTATGCTTCGGgcgaaaca
aaaatttgttaccAACTCCATCAGCAAATTTCAATTGATGAAATATATCT
TGTATCCAAATATTACATGTACCAATCACACCATCTTCCATTTGAACATC
AAATAAAAGGCTGACTGCTGATTCAGCGTTTTTCTCATACTGATAATTTT
CAATCTTAATGTTCATCTTTGTTTATTTCAAGTAGTTCTCTTTGTCTTTT
GTCtaag
Run BLAST on NCBI

protein sequence of TCONS_00070725-protein

>TCONS_00070725-protein ID=TCONS_00070725-protein|Name=TCONS_00070725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=456bp
MNIKIENYQYEKNAESAVSLLFDVQMEDGVIGTCNIWIQDIFHQLKFADG
VGNKFLFRPKHTGEIHNDDVEKSIKNIEKNVHEEKFRIRIGEENTIKVKE
EISTDVEIQYYDKLRYDVENNIKNIERNVHEQKFKIRIGEESAIKIKEEI
SADVEIQIDTKTYEASPKSLEQCNDFNRLKDLQTGNESSKQLHKNSIQEE
VDKLIEYQECGESFTSTKLTLHKGKHKLKEYKCKKCGERFTQRGDLKSHQ
NKKHQKKIKKFKCQTCKKKFPCKYSFNVHVSIHTGLKPFECKECGKSFAN
NAYLSRHRKVHEGNKYKCEDCGKSYTTIAHLKTHKKTIHEDIKRFKCFKC
SKCDKSYFRKGRFDAHMRAHSNIKPFECKECGKSFAWKRSLISHEKLHKG
VTSFRCGECGEQFDRRHFLMLHSKEKHDHPGPFTCCECGKSFNKRTTLAK
HFSEQH
Run BLAST on NCBI

transcript from alignment at scaffold_57:82177..84083

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070725 ID=TCONS_00070725|Name=TCONS_00070725|organism=Clytia hemisphaerica|type=transcript|length=1907bp|location=Sequence derived from alignment at scaffold_57:82177..84083 (Clytia hemisphaerica)
cttaGACAAAAGACAAAGAGAACTACTTGAAATAAACAAAGATGAACATT
AAGATTGAAAATTATCAGTATGAGAAAAACGCTGAATCAGCAGTCAGCCT
TTTATTTGATGTTCAAATGGAAGATGGTGTGATTGGTACATGTAATATTT
GGATACAAGATATATTTCATCAATTGAAATTTGCTGATGGAGTTggtaac
aaatttttgtttcgcCCGAAGCATACTGGTGAGATTCACAATGATGACGT
ggaaaaaagcattaaaaatatCGAGAAAAATGTGCACGAGGAGAAATTTA
GAATTAGAATTGGTGAAGAAAATACCATCAAAGTCAAAGAAGAAATAAGT
ACAGATGTTGAAATCCAATATTATGACAAGCTTCGTTATGATGTTGAAAA
TAACATTAAAAATATCGAGAGAAATGTTCACGAGCAAAAATTTAAGATTA
GAATTGGTGAAGAAAGTGCcatcaaaattaaagaagaaataAGTGCAGAC
GTTGAAATTCAAATCGATACAAAAACATATGAAGCCTCCCCAAAATCTTT
AGAACAATGTAACGATTTTAACCGATTAAAAGACCTTCAAACTGGAAATG
AAAGCTCAAAGCAATTACATAAAAATAGTATCCAGGAAGAGGTTGACAAA
TTAATTGAATATCAAGAATGTGGTGAGTCGTTCACATCCACAAAACTCAC
TTTGcataagggaaaacacaaattaaAAGAATATAAATGTAAAAAATGTG
GAGAGAGATTTACTCAAAGAGGAGATCTTAAATCacaccaaaataaaaaa
caccaaaaaaaaattaaaaaattcaaatgtcAAACttgcaaaaaaaagtt
tccttGTAAATACAGTTTTAATGTTCACGTAAGTATTCACACAGGTCTCA
AACCTTTTGAATGCAAGGAATGTGGTAAGTCATTTGCAAACAATGCTTAT
CTATCGAGACATCGTAAAGTTCACGAGGGTAACAAATATAAGTGTGAAGA
TTGTGGTAAAAGCTATACAACAATAGCTCACCTTAAGACTCATAAGAAAA
CTATTCACGAAGATATTAAACGTTTCAAGTGTTTCAAGTGTAGTAAGTGT
GATAAATCTTACTTTAGAAAAGGCCGATTCGATGCTCACATGCGTGCTCA
TTCTAATATCAAACCTTTTGAATgtaaagaatgtggtaaatcttttgcaT
GGAAAAGATCCCTCATATCGCATGAAAAGCTTCATAAAGGTGTTACATCT
TTTCGCTGTGGAGAATGTGGAGAACAATTTGATAGACGACATTTTCTTAT
GCTGCATTCTAAAGAGAAACATGACCATCCTGGACCTTTTACTTGTTGCG
AATGCGgaaaaagtttcaataaaaGGACAACCTTAGCAAAACATTTTTCA
GAGCAacattgaaatttattttgaaattagttACCTCAACATGAACAGTG
GAACTGTTCCTTTTTGATTTCatggaaaaactgaaaatagcCTCGTACAA
AGTTGGATAAACTAATATTTTTGAGTATTTGGCGTATTGAAGATCAtgta
ttttttctacttttttgttCCCTTTTGATTTCATGGAAAAATTGGATAAT
TTTATACTTGAAACTATTGGCATTAAAGATTATggttaatttgttttgtt
ttgaacttaAAAAGTTCTGATTCTGATGACTCATGgcccttttatttttt
ttgttgtagaatatttttggacctaccccggtggaggtcatataaattaa
cctctgtccgtttgtctgtccgtccgtccgttcgttaccaacttttctcg
agattggctctttagttttttctgattttttgcacaaagatgtgtaacta
taaaccctcgaatgtgacggagcccgattttcgaaaaaaaattttgcatg
aAAGGAG

Coding sequence (CDS) from alignment at scaffold_57:82177..84083

>TCONS_00070725 ID=TCONS_00070725|Name=TCONS_00070725|organism=Clytia hemisphaerica|type=CDS|length=1371bp|location=Sequence derived from alignment at scaffold_57:82177..84083 (Clytia hemisphaerica)
ATGAACATTAAGATTGAAAATTATCAGTATGAGAAAAACGCTGAATCAGC
AGTCAGCCTTTTATTTGATGTTCAAATGGAAGATGGTGTGATTGGTACAT
GTAATATTTGGATACAAGATATATTTCATCAATTGAAATTTGCTGATGGA
GTTggtaacaaatttttgtttcgcCCGAAGCATACTGGTGAGATTCACAA
TGATGACGTggaaaaaagcattaaaaatatCGAGAAAAATGTGCACGAGG
AGAAATTTAGAATTAGAATTGGTGAAGAAAATACCATCAAAGTCAAAGAA
GAAATAAGTACAGATGTTGAAATCCAATATTATGACAAGCTTCGTTATGA
TGTTGAAAATAACATTAAAAATATCGAGAGAAATGTTCACGAGCAAAAAT
TTAAGATTAGAATTGGTGAAGAAAGTGCcatcaaaattaaagaagaaata
AGTGCAGACGTTGAAATTCAAATCGATACAAAAACATATGAAGCCTCCCC
AAAATCTTTAGAACAATGTAACGATTTTAACCGATTAAAAGACCTTCAAA
CTGGAAATGAAAGCTCAAAGCAATTACATAAAAATAGTATCCAGGAAGAG
GTTGACAAATTAATTGAATATCAAGAATGTGGTGAGTCGTTCACATCCAC
AAAACTCACTTTGcataagggaaaacacaaattaaAAGAATATAAATGTA
AAAAATGTGGAGAGAGATTTACTCAAAGAGGAGATCTTAAATCacaccaa
aataaaaaacaccaaaaaaaaattaaaaaattcaaatgtcAAACttgcaa
aaaaaagtttccttGTAAATACAGTTTTAATGTTCACGTAAGTATTCACA
CAGGTCTCAAACCTTTTGAATGCAAGGAATGTGGTAAGTCATTTGCAAAC
AATGCTTATCTATCGAGACATCGTAAAGTTCACGAGGGTAACAAATATAA
GTGTGAAGATTGTGGTAAAAGCTATACAACAATAGCTCACCTTAAGACTC
ATAAGAAAACTATTCACGAAGATATTAAACGTTTCAAGTGTTTCAAGTGT
AGTAAGTGTGATAAATCTTACTTTAGAAAAGGCCGATTCGATGCTCACAT
GCGTGCTCATTCTAATATCAAACCTTTTGAATgtaaagaatgtggtaaat
cttttgcaTGGAAAAGATCCCTCATATCGCATGAAAAGCTTCATAAAGGT
GTTACATCTTTTCGCTGTGGAGAATGTGGAGAACAATTTGATAGACGACA
TTTTCTTATGCTGCATTCTAAAGAGAAACATGACCATCCTGGACCTTTTA
CTTGTTGCGAATGCGgaaaaagtttcaataaaaGGACAACCTTAGCAAAA
CATTTTTCAGAGCAacattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044001XLOC_044001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070725-proteinTCONS_00070725-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070725-exon-scaffold_57-1491911889:82177..84083TCONS_00070725-exon-scaffold_57-1491911889:82177..84083Clytia hemisphaericaexon
TCONS_00070725-exon-scaffold_57-1510915933:82177..84083TCONS_00070725-exon-scaffold_57-1510915933:82177..84083Clytia hemisphaericaexon
TCONS_00070725-exon-scaffold_57-1575043694:82177..84083TCONS_00070725-exon-scaffold_57-1575043694:82177..84083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:82177..84083 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.50927	4.7595	3.43817	4.16732	1.55186	0.968752	1.86008	1.91439	1.15032	1.45187	1.02444	0.812234	0.670745	0.400652	0.801227	1.04829	1.07551	1.50843	0.383338	0.417385	1.02584	0.94947	10.3957	8.53572	1.67754	1.96708	1.44261	1.402	7.33666	7.28073
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00070725 vs. Swiss-Prot (Human)
Match: ZN519 (Zinc finger protein 519 OS=Homo sapiens GN=ZNF519 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.506e-32
Identity = 76/174 (43.68%), Postives = 110/174 (63.22%), Query Frame = -3 
Query:  514 HVSIHTGLKPFECKECGKSFANNAYLSRHRKVHEGNK-YKCEDCGKSYTTIAHLKTHKKTIHEDIXXXXXXXXXXXXXXXFRKGRFDAHMRAHSNIKPFECKECGKSFAWKRSLISHEKLHKGVTSFRCGECGEQFDRRHFLMLHSKEKHDHPGPFTCCECGKSFNKRTTLAKH 1032
            H  IHTG KPF CKECGK+F  ++Y+++H+++H G K +KC++CGK++   +HL  H++ IH      K FKC +C K++ R      H R H+  K F+C+ECGK+F W   L  H+++H G   F+C ECG+ F R   L  H +  H    PF C ECGK+FN+R+TL +H
Sbjct:  366 HQRIHTGEKPFRCKECGKAFNRSSYVTQHQRMHTGEKPFKCKECGKAFNRASHLTQHQR-IHTG---EKHFKCKECGKAFNRGSHLTRHQRIHTGEKSFKCEECGKAFIWGSHLTQHQRVHTGEKFFKCKECGKAFTRSSHLTQHQR-IHTGEKPFKCKECGKAFNRRSTLTQH 534

HSP 2 Score: 117.857 bits (294), Expect = 7.834e-28
Identity = 72/174 (41.38%), Postives = 106/174 (60.92%), Query Frame = -3 
Query:  514 HVSIHTGLKPFECKECGKSFANNAYLSRHRKVHEGNK-YKCEDCGKSYTTIAHLKTHKKTIHEDIXXXXXXXXXXXXXXXFRKGRFDAHMRAHSNIKPFECKECGKSFAWKRSLISHEKLHKGVTSFRCGECGEQFDRRHFLMLHSKEKHDHPGPFTCCECGKSFNKRTTLAKH 1032
            H  IHTG KPF+CKECGK+F   +YL++H+++H G + +KCE+CGK++   ++L  H++ IH      K F+C +C K++ R      H R H+  KPF+CKECGK+F     L  H+++H G   F+C ECG+ F+R   L  H +  H     F C ECGK+F   + L +H
Sbjct:  310 HQRIHTGEKPFKCKECGKAFNRGSYLTQHQRIHTGERAFKCEECGKAFNRGSYLTQHQR-IHTG---EKPFRCKECGKAFNRSSYVTQHQRMHTGEKPFKCKECGKAFNRASHLTQHQRIHTGEKHFKCKECGKAFNRGSHLTRHQR-IHTGEKSFKCEECGKAFIWGSHLTQH 478

HSP 3 Score: 94.7449 bits (234), Expect = 2.543e-20
Identity = 60/174 (34.48%), Postives = 88/174 (50.57%), Query Frame = -3 
Query:  514 HVSIHTGLKPFECKECGKSFANNAYLSRHRKVHEGNK-YKCEDCGKSYTTIAHLKTHKKTIHEDIXXXXXXXXXXXXXXXFRKGRFDAHMRAHSNIKPFECKECGKSFAWKRSLISHEKLHKGVTSFRCGECGEQFDRRHFLMLHSKEKHDHPGPFTCCECGKSFNKRTTLAKH 1032
            H  I+TG K  + KE GK+F    +L  H+K+H G K YKC+ C K++   +HL  H+                                R H+  KPF+CKECGK+F     L  H+++H G  +F+C ECG+ F+R  +L  H +  H    PF C ECGK+FN+ + + +H
Sbjct:  255 HKIINTGEKSVKYKERGKAFTRGLHLG-HQKIHTGEKPYKCKKCDKAFNKSSHLAQHQ--------------------------------RIHTGEKPFKCKECGKAFNRGSYLTQHQRIHTGERAFKCEECGKAFNRGSYLTQHQR-IHTGEKPFRCKECGKAFNRSSYVTQH 394

HSP 4 Score: 87.8113 bits (216), Expect = 4.651e-18
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = -3 
Query:  673 HVSIHTGLKPFECKECGKSFANNAYLSRHRKVHEGNK-YKCEDCGKSYTTIAHLKTHKKTIHEDIXXXXXXXXXXXXXXXFRKGRFDAHMRAHSNIKPFECKECGKSFAWKRSLISHEKLH 1032
            H  IHTG K F+CKECGK+F   ++L+RH+++H G K +KCE+CGK++   +HL  H++ +H      K FKC +C K++ R      H R H+  KPF+CKECGK+F  + +L  H+ +H
Sbjct:  422 HQRIHTGEKHFKCKECGKAFNRGSHLTRHQRIHTGEKSFKCEECGKAFIWGSHLTQHQR-VHTG---EKFFKCKECGKAFTRSSHLTQHQRIHTGEKPFKCKECGKAFNRRSTLTQHQIIH 538
The following BLAST results are available for this feature:
BLAST of TCONS_00070725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5191.506e-3243.68Zinc finger protein 519 OS=Homo sapiens GN=ZNF519 ... [more]
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