TCONS_00070724 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070724
Unique NameTCONS_00070724
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070724 ID=TCONS_00070724|Name=TCONS_00070724|organism=Clytia hemisphaerica|type=transcript|length=491bp
ATTAAAAAGGcataaaatataatatatagaAAATATGTACAcgagaaaag
ttttaaaagcttATTTTATGTCTTTTAAAATCTAAATGAATAATTTATTT
GTGACATCCAGTCTGGTAAATTATGGACGAATTGACGGCCCTCGCAGAAA
AATAGCTCATAGggatcaatttttcaaaaaacccaGTGTAAAAAGATCCT
GGGGTAAGTCAGAACAGCAATGATATCCTAAATGCCAATGGACAATTATC
TTTTCAGTACTTAGAAGCTCCTACGCGAAAAACACTCATCACATACATGA
CAACACaatagttctatttatactgagacgattaatATGTCTGATacgag
caatttagaaaatgagcattatggaggagtgtactttccattcatgtttc
agtaaataggatctcctccacagatcacatttttcaaattactcgtctca
gacgatttttccgtctcagtatgGAACTAATttataaatat
Run BLAST on NCBI

transcript from alignment at scaffold_57:80821..81311

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070724 ID=TCONS_00070724|Name=TCONS_00070724|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at scaffold_57:80821..81311 (Clytia hemisphaerica)
atatttataaATTAGTTCcatactgagacggaaaaatcgtctgagacgag
taatttgaaaaatgtgatctgtggaggagatcctatttactgaaacatga
atggaaagtacactcctccataatgctcattttctaaattgctcgtATCA
GACATattaatcgtctcagtataaatagaactattGTGTTGTCATGTATG
TGATGAGTGTTTTTCGCGTAGGAGCTTCTAAGTACTGAAAAGATAATTGT
CCATTGGCATTTAGGATATCATTGCTGTTCTGACTTACCCCAGGATCTTT
TTACACtgggttttttgaaaaattgatccCTATGAGCTATTTTTCTGCGA
GGGCCGTCAATTCGTCCATAATTTACCAGACTGGATGTCACAAATAAATT
ATTCATTTAGATTTTAAAAGACATAAAATaagcttttaaaacttttctcg
TGTACATATTTtctatatattatattttatgCCTTTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044000XLOC_044000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070724-exon-scaffold_57-1491911889:80821..81311TCONS_00070724-exon-scaffold_57-1491911889:80821..81311Clytia hemisphaericaexon
TCONS_00070724-exon-scaffold_57-1510915933:80821..81311TCONS_00070724-exon-scaffold_57-1510915933:80821..81311Clytia hemisphaericaexon
TCONS_00070724-exon-scaffold_57-1575043694:80821..81311TCONS_00070724-exon-scaffold_57-1575043694:80821..81311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:80821..81311 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.137174	0	0.2857	0.799654	0.303515	1.30602	1.23281	0.253164	0.613838	0.306909	0.790512	0.292682	0.620491	0.809738	0.0843909	0.205195	0.326353	0	0.34192	1.07031	0.252997	1.14492	0.613729	0.152079	0.618946	0.244088	0.369449	0.508848	1.32472
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070724 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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