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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070723 ID=TCONS_00070723|Name=TCONS_00070723|organism=Clytia hemisphaerica|type=transcript|length=1852bp
NATTAAAAAGGcataaaatataatatatagaAAATATGTACAcgagaaaa
gttttaaaagcttATTTTATGTCTTTTAAAATCTAAATGAATAATTTATT
TGTGACATCCAGTCTGGTAAATTATGGACGAATTGACGGCCCTCGCAGAA
AAATAGCTCATAGggatcaatttttcaaaaaacccaGTGTAAAAAGATCC
TGGGGTAAGTCAGAACAGCAATGATATCCTAAATGCCAATGGACAATTAT
CTTTTCAGTACTTAGAAGCTCCTACACGAAAAACACTCATCACATACATG
ACAACACaatagttctatttatactgagacgattaatttgtctgagacga
gcaatttagaaaatgagcattgTGGAGGTgtgtactttccattcatgttt
caataaataggatctcctccacatatcacatttttcaaactactcgtctc
agacgatttttccgtctcagtatgGAACTAATTTATAAATATTGTGACAT
CGGGTGCATCGAATGCTTATGTTTATCCCGGTAACAccttttccaaaact
ttttaccACAAACCTGACACTCATAAATCTTTTTATCCTCCGTCTTATGA
ACGGAAAcaatatgtttttgaaaatctccTTTGCGTGCAAATCCAACTTC
ACAGTCTTTACAATTGAATGCTTTAATATTAGAATGCATTGTTTTCATGT
GTGTCTCAAAATGACAGGTCCGTTCGAAACCTTCACCACAAACGTGACAT
GTTAAAGGTAAACTCTCCAAAGCTCCTCTAAGAATAGCTTTCTTTTGGGA
ACTATCCAGTGAATGGTATGTCACGCTAGGCATCATATCATTAGTTTCAT
CTTGAGAAGAGCTACCAGCATTGTGAGATGTATTTGGTGGAAaccttatt
gaaaaattatttatttgtgTAGGATTTTCGACCGGGACTACAGTGATATA
ACTTCCGTTAGATGGACTTTCGAAATGATTTCTATCCAGTATTAAACCCT
CCTTAGAATCATAATCTGGCTCTTCCTTTTTAATGACTGTGTGGTTGGTA
AAAGAGTTCTTCGAATTAATTTTACTATGACTTAGAGTATCAGCAATCTT
TTCAATATTGAACTTCTTATGAGACAAACCTTTTGGTTGGTGGTTAGTGT
CTCTAATAGGTCTCTTGTTTGATGATAAACTATTATTTGTCTGTCCGTGA
ATTTTACCGTGTGAAAATGGGTCACCACAAACATTTTCATCATCCGAAAG
AAATATTCTTCCATGAGCTTTTTCGTTTGGAAGAACACCTCCATTACTAT
AACGTTGCGGCGGTGAAGAATATTTCATTAAGTCGTTTGGAATGCGCTTC
TCTTGCTTGTTATCAATAGAATGAAACGCCTGTCCGTGAATTTTACTATT
TGAAAATGGGTCACCACATACATTATCATCACTCGAATTAAATATCCTTC
CATGAACTTTTTCATTTGGTGtaaatgaaaaaacacttcCAAATGCATCT
GTCATTTCAATCTTTTTGTAGAGNGAGCTTTTTCGTTTGGTGtaaatgaa
aaaacacttcCAAATGCATCTGTCATTTCtatctttttgtagaaattctC
AAGGGATAAATTACAGGTGCCGACAACAAAATCTTGTAATTTAAGCTCAA
TAGAGAGTTTAATGGGTGGTCCAGGCGGTTGCAATTCTCCATTTGGTACG
CCATTGTCTGTTGGATGTCTGCTGAATGGCGTAACGTCAATACTAATACT
CATTGTTCATCCATTTACTTTAaccttttatatttttatctaaaaaaaga
agaacaaaaattagaattttgaaaagcaCACACTGAATAAGGAAGTAAAC
TT Run BLAST on NCBI protein sequence of TCONS_00070723-protein >TCONS_00070723-protein ID=TCONS_00070723-protein|Name=TCONS_00070723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MTDAFGSVFSFTPNEKVHGRIFNSSDDNVCGDPFSNSKIHGQAFHSIDNK
QEKRIPNDLMKYSSPPQRYSNGGVLPNEKAHGRIFLSDDENVCGDPFSHG
KIHGQTNNSLSSNKRPIRDTNHQPKGLSHKKFNIEKIADTLSHSKINSKN
SFTNHTVIKKEEPDYDSKEGLILDRNHFESPSNGSYITVVPVENPTQINN
FSIRFPPNTSHNAGSSSQDETNDMMPSVTYHSLDSSQKKAILRGALESLP
LTCHVCGEGFERTCHFETHMKTMHSNIKAFNCKDCEVGFARKGDFQKHIV
SVHKTEDKKIYECQVCGKKFWKRCYRDKHKHSMHPMSQYL Run BLAST on NCBI transcript from alignment at scaffold_57:75820..77671 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070723 ID=TCONS_00070723|Name=TCONS_00070723|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at scaffold_57:75820..77671 (Clytia hemisphaerica)
AAGTTTACTTCCTTATTCAGTGTGtgcttttcaaaattctaatttttgtt
cttctttttttagataaaaatataaaaggtTAAAGTAAATGGATGAACAA
TGAGTATTAGTATTGACGTTACGCCATTCAGCAGACATCCAACAGACAAT
GGCGTACCAAATGGAGAATTGCAACCGCCTGGACCACCCATTAAACTCTC
TATTGAGCTTAAATTACAAGATTTTGTTGTCGGCACCTGTAATTTATCCC
TTGagaatttctacaaaaagataGAAATGACAGATGCATTTGgaagtgtt
ttttcatttaCACCAAACGAAAAAGCTCNCTCTACAAAAAGATTGAAATG
ACAGATGCATTTGgaagtgttttttcatttaCACCAAATGAAAAAGTTCA
TGGAAGGATATTTAATTCGAGTGATGATAATGTATGTGGTGACCCATTTT
CAAATAGTAAAATTCACGGACAGGCGTTTCATTCTATTGATAACAAGCAA
GAGAAGCGCATTCCAAACGACTTAATGAAATATTCTTCACCGCCGCAACG
TTATAGTAATGGAGGTGTTCTTCCAAACGAAAAAGCTCATGGAAGAATAT
TTCTTTCGGATGATGAAAATGTTTGTGGTGACCCATTTTCACACGGTAAA
ATTCACGGACAGACAAATAATAGTTTATCATCAAACAAGAGACCTATTAG
AGACACTAACCACCAACCAAAAGGTTTGTCTCATAAGAAGTTCAATATTG
AAAAGATTGCTGATACTCTAAGTCATAGTAAAATTAATTCGAAGAACTCT
TTTACCAACCACACAGTCATTAAAAAGGAAGAGCCAGATTATGATTCTAA
GGAGGGTTTAATACTGGATAGAAATCATTTCGAAAGTCCATCTAACGGAA
GTTATATCACTGTAGTCCCGGTCGAAAATCCTAcacaaataaataatttt
tcaataaggtTTCCACCAAATACATCTCACAATGCTGGTAGCTCTTCTCA
AGATGAAACTAATGATATGATGCCTAGCGTGACATACCATTCACTGGATA
GTTCCCAAAAGAAAGCTATTCTTAGAGGAGCTTTGGAGAGTTTACCTTTA
ACATGTCACGTTTGTGGTGAAGGTTTCGAACGGACCTGTCATTTTGAGAC
ACACATGAAAACAATGCATTCTAATATTAAAGCATTCAATTGTAAAGACT
GTGAAGTTGGATTTGCACGCAAAggagattttcaaaaacatattgTTTCC
GTTCATAAGACGGAGGATAAAAAGATTTATGAGTGTCAGGTTTGTggtaa
aaagttttggaaaaggTGTTACCGGGATAAACATAAGCATTCGATGCACC
CGATGTCACAATATTTATAAATTAGTTCcatactgagacggaaaaatcgt
ctgagacgagtagtttgaaaaatgtgatatgtggaggagatcctatttat
tgaaacatgaatggaaagtacacACCTCCAcaatgctcattttctaaatt
gctcgtctcagacaaattaatcgtctcagtataaatagaactattGTGTT
GTCATGTATGTGATGAGTGTTTTTCGTGTAGGAGCTTCTAAGTACTGAAA
AGATAATTGTCCATTGGCATTTAGGATATCATTGCTGTTCTGACTTACCC
CAGGATCTTTTTACACtgggttttttgaaaaattgatccCTATGAGCTAT
TTTTCTGCGAGGGCCGTCAATTCGTCCATAATTTACCAGACTGGATGTCA
CAAATAAATTATTCATTTAGATTTTAAAAGACATAAAATaagcttttaaa
acttttctcgTGTACATATTTtctatatattatattttatgCCTTTTTAA
TN Coding sequence (CDS) from alignment at scaffold_57:75820..77671 >TCONS_00070723 ID=TCONS_00070723|Name=TCONS_00070723|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_57:75820..77671 (Clytia hemisphaerica)
ATGACAGATGCATTTGgaagtgttttttcatttaCACCAAATGAAAAAGT
TCATGGAAGGATATTTAATTCGAGTGATGATAATGTATGTGGTGACCCAT
TTTCAAATAGTAAAATTCACGGACAGGCGTTTCATTCTATTGATAACAAG
CAAGAGAAGCGCATTCCAAACGACTTAATGAAATATTCTTCACCGCCGCA
ACGTTATAGTAATGGAGGTGTTCTTCCAAACGAAAAAGCTCATGGAAGAA
TATTTCTTTCGGATGATGAAAATGTTTGTGGTGACCCATTTTCACACGGT
AAAATTCACGGACAGACAAATAATAGTTTATCATCAAACAAGAGACCTAT
TAGAGACACTAACCACCAACCAAAAGGTTTGTCTCATAAGAAGTTCAATA
TTGAAAAGATTGCTGATACTCTAAGTCATAGTAAAATTAATTCGAAGAAC
TCTTTTACCAACCACACAGTCATTAAAAAGGAAGAGCCAGATTATGATTC
TAAGGAGGGTTTAATACTGGATAGAAATCATTTCGAAAGTCCATCTAACG
GAAGTTATATCACTGTAGTCCCGGTCGAAAATCCTAcacaaataaataat
ttttcaataaggtTTCCACCAAATACATCTCACAATGCTGGTAGCTCTTC
TCAAGATGAAACTAATGATATGATGCCTAGCGTGACATACCATTCACTGG
ATAGTTCCCAAAAGAAAGCTATTCTTAGAGGAGCTTTGGAGAGTTTACCT
TTAACATGTCACGTTTGTGGTGAAGGTTTCGAACGGACCTGTCATTTTGA
GACACACATGAAAACAATGCATTCTAATATTAAAGCATTCAATTGTAAAG
ACTGTGAAGTTGGATTTGCACGCAAAggagattttcaaaaacatattgTT
TCCGTTCATAAGACGGAGGATAAAAAGATTTATGAGTGTCAGGTTTGTgg
taaaaagttttggaaaaggTGTTACCGGGATAAACATAAGCATTCGATGC
ACCCGATGTCACAATATTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070723-exon-scaffold_57-1491911889:75820..77671 | TCONS_00070723-exon-scaffold_57-1491911889:75820..77671 | Clytia hemisphaerica | exon |
| TCONS_00070723-exon-scaffold_57-1510915933:75820..77671 | TCONS_00070723-exon-scaffold_57-1510915933:75820..77671 | Clytia hemisphaerica | exon |
| TCONS_00070723-exon-scaffold_57-1575043694:75820..77671 | TCONS_00070723-exon-scaffold_57-1575043694:75820..77671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:75820..77671 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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