TCONS_00070721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070721
Unique NameTCONS_00070721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070721 ID=TCONS_00070721|Name=TCONS_00070721|organism=Clytia hemisphaerica|type=transcript|length=1408bp
CTCTACCCTACTTTTTTCTCTCATTTAGCAGGATGAAAGAATATAACGTA
ACGTGATACTACAGTGGAGACTCGGTAGCTCAAACCTGCAccgggaacac
aaatttgttgaGTTAAGGAAATGTCGAGTTATGGATTAAGGTTTTTAAGT
CATTGTTAACTGAATGggacaagaaaacttgttcgagttaaggagacagt
CGAGTTAAGAAGACactcgagttaaggagacaactgagttaaggaaacat
ttgagttatagaggttcgagttaaagagatcTACTatagtaaaaaagaaa
aaaacatttttacaaatgaaaTTATGGTTGTTGGTGACTCATGTTTGTAG
CCATTGGTTGGTTAGCTCCAGAAAACCCTGCCAAGACCATCAAATTCTGT
TTTGCAATTTCATTATCACAGACAACCATTTCTACGATTGACGATGGTGG
TTCTGGACGATTCGTCAACACATCCCGAGAAAAAACTGAAGCGTCTCTGG
GAAAAGTTAACGTTTCTCGAGGAAAGATAGGTGTCTCGCGAGGATTGATG
GTATTAAATTGATGGTCTTTATGTAGGACAACAGCTGCTGGTTCCCGAGG
AGGATTTACGATCGCTTCTATATCTTCATGAGTCTTTTTATGTCGTTTGA
AGTCGTATTTGTTGGCAAAAGATTGCTCACATTTCGTACATTTAAATGGC
TTAAGACCTCTATGAGCAACATCTACGTGTCTTTTGAGATCAAACTTGTG
TGAGTAACGTTTCTCACATTCCTGACATTGAAAAGGTTGAAGACCTTTAT
GAGCAATATCTACGTGTGTTTCCATTCGGCATTTGTGTACAAAACCTTTA
CCACAAACTTGACATGTATAAGGTTTAATTTCAGAATGAACGTGTAAATG
CTTGCCTAGCTCTTCCTTTCGTGCAAATGATTTACCACATTCTGTACATT
TAAATGGTTTGAGACCTTTATGAATGGCATCATGATGAATTCGCCGCCTG
TAATTTGTTTTAAATACTTTCCCACAATCCTCGCATTGTTTAGACCCTTC
TTTAGGCTTTGGagttttggaaattttccttTTACTTTCATAAGgcttaa
ataaaaaatcattctTTCGATTATCGCCAAACTCGACACGGTCAAACAAA
TTATCAATAGTTACATGACACGTACCCATTATCTTACCACCTTTCTTGAT
CTcaagtgaaaatttgattggGATTTTAGAGCCTTCATTTTTATCCACGA
TTTCCTTGATTGAAACGTTgtcgattttcaattttatctttttctctttc
ttctcGACTGTTTCATTATTCTCtgccattttttatctttttttaaatac
ttttttttctcaattctgaaaataaaataaataaacatgaATATCTTATC
AAAAGACG
Run BLAST on NCBI

protein sequence of TCONS_00070721-protein

>TCONS_00070721-protein ID=TCONS_00070721-protein|Name=TCONS_00070721-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MAENNETVEKKEKKIKLKIDNVSIKEIVDKNEGSKIPIKFSLEIKKGGKI
MGTCHVTIDNLFDRVEFGDNRKNDFLFKPYESKRKISKTPKPKEGSKQCE
DCGKVFKTNYRRRIHHDAIHKGLKPFKCTECGKSFARKEELGKHLHVHSE
IKPYTCQVCGKGFVHKCRMETHVDIAHKGLQPFQCQECEKRYSHKFDLKR
HVDVAHRGLKPFKCTKCEQSFANKYDFKRHKKTHEDIEAIVNPPREPAAV
VLHKDHQFNTINPRETPIFPRETLTFPRDASVFSRDVLTNRPEPPSSIVE
MVVCDNEIAKQNLMVLAGFSGANQPMATNMSHQQP
Run BLAST on NCBI

transcript from alignment at scaffold_57:53427..54834

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070721 ID=TCONS_00070721|Name=TCONS_00070721|organism=Clytia hemisphaerica|type=transcript|length=1408bp|location=Sequence derived from alignment at scaffold_57:53427..54834 (Clytia hemisphaerica)
CGTCTTTTGATAAGATATtcatgtttatttattttattttcagaattgag
aaaaaaaagtatttaaaaaaagataaaaaatggcaGAGAATAATGAAACA
GTCgagaagaaagagaaaaagataaaattgaaaatcgacAACGTTTCAAT
CAAGGAAATCGTGGATAAAAATGAAGGCTCTAAAATCccaatcaaatttt
cacttgAGATCAAGAAAGGTGGTAAGATAATGGGTACGTGTCATGTAACT
ATTGATAATTTGTTTGACCGTGTCGAGTTTGGCGATAATCGAAagaatga
ttttttatttaagcCTTATGAAAGTAAaaggaaaatttccaaaactCCAA
AGCCTAAAGAAGGGTCTAAACAATGCGAGGATTGTGGGAAAGTATTTAAA
ACAAATTACAGGCGGCGAATTCATCATGATGCCATTCATAAAGGTCTCAA
ACCATTTAAATGTACAGAATGTGGTAAATCATTTGCACGAAAGGAAGAGC
TAGGCAAGCATTTACACGTTCATTCTGAAATTAAACCTTATACATGTCAA
GTTTGTGGTAAAGGTTTTGTACACAAATGCCGAATGGAAACACACGTAGA
TATTGCTCATAAAGGTCTTCAACCTTTTCAATGTCAGGAATGTGAGAAAC
GTTACTCACACAAGTTTGATCTCAAAAGACACGTAGATGTTGCTCATAGA
GGTCTTAAGCCATTTAAATGTACGAAATGTGAGCAATCTTTTGCCAACAA
ATACGACTTCAAACGACATAAAAAGACTCATGAAGATATAGAAGCGATCG
TAAATCCTCCTCGGGAACCAGCAGCTGTTGTCCTACATAAAGACCATCAA
TTTAATACCATCAATCCTCGCGAGACACCTATCTTTCCTCGAGAAACGTT
AACTTTTCCCAGAGACGCTTCAGTTTTTTCTCGGGATGTGTTGACGAATC
GTCCAGAACCACCATCGTCAATCGTAGAAATGGTTGTCTGTGATAATGAA
ATTGCAAAACAGAATTTGATGGTCTTGGCAGGGTTTTCTGGAGCTAACCA
ACCAATGGCTACAAACATGAGTCACCAACAACCATAAtttcatttgtaaa
aatgtttttttcttttttactatAGTAgatctctttaactcgaacctcta
taactcaaatgtttccttaactcagttgtctccttaactcgagtGTCTTC
TTAACTCGactgtctccttaactcgaacaagttttcttgtccCATTCAGT
TAACAATGACTTAAAAACCTTAATCCATAACTCGACATTTCCTTAACtca
acaaatttgtgttcccggTGCAGGTTTGAGCTACCGAGTCTCCACTGTAG
TATCACGTTACGTTATATTCTTTCATCCTGCTAAATGAGAGAAAAAAGTA
GGGTAGAG

Coding sequence (CDS) from alignment at scaffold_57:53427..54834

>TCONS_00070721 ID=TCONS_00070721|Name=TCONS_00070721|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_57:53427..54834 (Clytia hemisphaerica)
atggcaGAGAATAATGAAACAGTCgagaagaaagagaaaaagataaaatt
gaaaatcgacAACGTTTCAATCAAGGAAATCGTGGATAAAAATGAAGGCT
CTAAAATCccaatcaaattttcacttgAGATCAAGAAAGGTGGTAAGATA
ATGGGTACGTGTCATGTAACTATTGATAATTTGTTTGACCGTGTCGAGTT
TGGCGATAATCGAAagaatgattttttatttaagcCTTATGAAAGTAAaa
ggaaaatttccaaaactCCAAAGCCTAAAGAAGGGTCTAAACAATGCGAG
GATTGTGGGAAAGTATTTAAAACAAATTACAGGCGGCGAATTCATCATGA
TGCCATTCATAAAGGTCTCAAACCATTTAAATGTACAGAATGTGGTAAAT
CATTTGCACGAAAGGAAGAGCTAGGCAAGCATTTACACGTTCATTCTGAA
ATTAAACCTTATACATGTCAAGTTTGTGGTAAAGGTTTTGTACACAAATG
CCGAATGGAAACACACGTAGATATTGCTCATAAAGGTCTTCAACCTTTTC
AATGTCAGGAATGTGAGAAACGTTACTCACACAAGTTTGATCTCAAAAGA
CACGTAGATGTTGCTCATAGAGGTCTTAAGCCATTTAAATGTACGAAATG
TGAGCAATCTTTTGCCAACAAATACGACTTCAAACGACATAAAAAGACTC
ATGAAGATATAGAAGCGATCGTAAATCCTCCTCGGGAACCAGCAGCTGTT
GTCCTACATAAAGACCATCAATTTAATACCATCAATCCTCGCGAGACACC
TATCTTTCCTCGAGAAACGTTAACTTTTCCCAGAGACGCTTCAGTTTTTT
CTCGGGATGTGTTGACGAATCGTCCAGAACCACCATCGTCAATCGTAGAA
ATGGTTGTCTGTGATAATGAAATTGCAAAACAGAATTTGATGGTCTTGGC
AGGGTTTTCTGGAGCTAACCAACCAATGGCTACAAACATGAGTCACCAAC
AACCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043997XLOC_043997Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070721-proteinTCONS_00070721-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070721-exon-scaffold_57-1491911889:53427..54834TCONS_00070721-exon-scaffold_57-1491911889:53427..54834Clytia hemisphaericaexon
TCONS_00070721-exon-scaffold_57-1510915933:53427..54834TCONS_00070721-exon-scaffold_57-1510915933:53427..54834Clytia hemisphaericaexon
TCONS_00070721-exon-scaffold_57-1575043694:53427..54834TCONS_00070721-exon-scaffold_57-1575043694:53427..54834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:53427..54834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.9983	35.5486	17.1199	14.9464	16.4799	11.5722	12.4777	12.3582	6.15881	6.42415	7.55447	4.02011	4.86072	3.71951	4.83894	5.69779	8.21869	8.21899	2.10743	4.21307	6.00784	4.9817	22.1541	18.7225	5.7184	8.22236	4.66589	3.20424	9.95112	10.0382
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00070721 vs. Swiss-Prot (Human)
Match: ZSCA2 (Zinc finger and SCAN domain-containing protein 2 OS=Homo sapiens GN=ZSCAN2 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.638e-27
Identity = 59/137 (43.07%), Postives = 81/137 (59.12%), Query Frame = -2 
Query:  628 QCEDCGKVFKTNYRRRIHHDAIHKGLKPFKCTECGKSFARKEELGKHLHVHSEIKPYTCQVCGKGFVHKCRMETHVDIAHKGLQPFQCQECEKRYSHKFDLKRHVDVAHRGLKPFKCTKCEQSFANKYDFKRHKKTH 1038
            +C DCGK F +     I H  IH G KPF+C ECGKSF+R   L  H   H+  KPY+C  CGK F ++  + TH  I H G +P++C+EC + +S+  +L RH  + H G KP+KCT C Q F+       H++TH
Sbjct:  279 KCRDCGKSF-SRSANLITHQRIHTGEKPFQCAECGKSFSRSPNLIAHQRTHTGEKPYSCPECGKSFGNRSSLNTHQGI-HTGEKPYECKECGESFSYNSNLIRHQRI-HTGEKPYKCTDCGQRFSQSSALITHRRTH 412

HSP 2 Score: 98.5969 bits (244), Expect = 8.412e-22
Identity = 54/137 (39.42%), Postives = 71/137 (51.82%), Query Frame = -2 
Query:  628 QCEDCGKVFKTNYRRRIHHDAIHKGLKPFKCTECGKSFARKEELGKHLHVHSEIKPYTCQVCGKGFVHKCRMETHVDIAHKGLQPFQCQECEKRYSHKFDLKRHVDVAHRGLKPFKCTKCEQSFANKYDFKRHKKTH 1038
            +C  CGK F +     I H+  H G K +KC ECGKSF+      +H   H+  KPY C+ CGK F     + TH  I H G +PFQC EC K +S   +L  H    H G KP+ C +C +SF N+     H+  H
Sbjct:  223 ECPQCGKTF-SRKSHLITHERTHTGEKYYKCDECGKSFSDGSNFSRHQTTHTGEKPYKCRDCGKSFSRSANLITHQRI-HTGEKPFQCAECGKSFSRSPNLIAH-QRTHTGEKPYSCPECGKSFGNRSSLNTHQGIH 356

HSP 3 Score: 98.2117 bits (243), Expect = 1.135e-21
Identity = 53/137 (38.69%), Postives = 78/137 (56.93%), Query Frame = -2 
Query:  628 QCEDCGKVFKTNYRRRIHHDAIHKGLKPFKCTECGKSFARKEELGKHLHVHSEIKPYTCQVCGKGFVHKCRMETHVDIAHKGLQPFQCQECEKRYSHKFDLKRHVDVAHRGLKPFKCTKCEQSFANKYDFKRHKKTH 1038
            +C  CG+ F  +    + H  IH G KP+KC+ECGK F+++ +L  H   H+  KPY C +CGK F     +  H   AH G +P++C EC K +S    L  H  + H G KP+KC +C + F+N  +F  H++TH
Sbjct:  475 ECLTCGESFSWS-SNLLKHQRIHTGEKPYKCSECGKCFSQRSQLVVHQRTHTGEKPYKCLMCGKSFSRGSILVMH-QRAHLGDKPYRCPECGKGFSWNSVLIIHQRI-HTGEKPYKCPECGKGFSNSSNFITHQRTH 608

HSP 4 Score: 93.2041 bits (230), Expect = 3.779e-20
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = -2 
Query:  628 QCEDCGKVFKTNYRRRIHHDAIHKGLKPFKCTECGKSFARKEELGKHLHVHSEIKPYTCQVCGKGFVHKCRMETHVDIAHKGLQPFQCQECEKRYSHKFDLKRHVDVAHRGLKPFKCTKCEQSFANKYDFKRHKKTH 1038
            +C++CG+ F  N    I H  IH G KP+KCT+CG+ F++   L  H   H+  KPY C  CGK F     + TH    H   +P++C  C K +S    L  H  + H G KP++C  C +SF+   +  +H++ H
Sbjct:  363 ECKECGESFSYN-SNLIRHQRIHTGEKPYKCTDCGQRFSQSSALITHRRTHTGEKPYQCSECGKSFSRSSNLATHRRT-HMVEKPYKCGVCGKSFSQSSSLIAHQGM-HTGEKPYECLTCGESFSWSSNLLKHQRIH 496

HSP 5 Score: 82.4185 bits (202), Expect = 1.174e-16
Identity = 48/143 (33.57%), Postives = 74/143 (51.75%), Query Frame = -2 
Query:  628 EGSKQCEDCGKVFKTNYR--RRIHHDAIHKGLKPFKCTECGKSFARKEELGKHLHVHSEIKPYTCQVCGKGFVHKCRMETHVDIAHKGLQPFQCQECEKRYSHKFDLKRHVDVAHRGLKPFKCTKCEQSFANKYDFKRHKKTH 1050
            +G    ED G+V   +    + I     + G KP++C +CGK+F+RK  L  H   H+  K Y C  CGK F        H    H G +P++C++C K +S   +L  H  + H G KPF+C +C +SF+   +   H++TH
Sbjct:  188 QGHSPGEDHGEVVSQDREVGQLIGLQGTYLGEKPYECPQCGKTFSRKSHLITHERTHTGEKYYKCDECGKSFSDGSNFSRH-QTTHTGEKPYKCRDCGKSFSRSANLITHQRI-HTGEKPFQCAECGKSFSRSPNLIAHQRTH 328
The following BLAST results are available for this feature:
BLAST of TCONS_00070721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZSCA22.638e-2743.07Zinc finger and SCAN domain-containing protein 2 O... [more]
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