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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070720 ID=TCONS_00070720|Name=TCONS_00070720|organism=Clytia hemisphaerica|type=transcript|length=2729bpRun BLAST on NCBI protein sequence of TCONS_00070720-protein >TCONS_00070720-protein ID=TCONS_00070720-protein|Name=TCONS_00070720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp MDKEIKIKIEEEDFSYDGAEFTETINIKIETDSIGCNNEQGNNEQSDTAVRun BLAST on NCBI transcript from alignment at scaffold_57:41198..43926 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070720 ID=TCONS_00070720|Name=TCONS_00070720|organism=Clytia hemisphaerica|type=transcript|length=2729bp|location=Sequence derived from alignment at scaffold_57:41198..43926 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:41198..43926 >TCONS_00070720 ID=TCONS_00070720|Name=TCONS_00070720|organism=Clytia hemisphaerica|type=CDS|length=1869bp|location=Sequence derived from alignment at scaffold_57:41198..43926 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070720 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 2.942e-37 Identity = 104/331 (31.42%), Postives = 161/331 (48.64%), Query Frame = -1
Query: 552 EKEFGCTKCGRYFASKQKLSTHIRISHKHSKAFQCQECGKCFEWXXXXXXXXXXXASQKEKFLLKLKGESHSNDK-VPCHICNKFYSKHNLQRHINNKHSTTTQFKCKKCEETFPVKSALNKHLKTH-GDNLYECDKCNESFKFKTELHSHKVTVHNASTYAYKCGECGAHFETKDELSFHFIIHQGAQKYQCDKCCRYFGSEIELKFHADEHMTWSIPLPCEACGKEFTEKFDFENHKK-FSKCRTFECAQCDKLFATKLELKNHQREHDVIETXXXXXXXXXYPKEGFSEDVYLGVMSVT----KPFKCNVCGERFSQEEKLRTHKRTH 1523
EK + C +CG+ F+ K +L H R +H K ++C C K F K L++ +H+ +K CH C K ++ ++ H+ F+C +C ++F S L H +TH G+ Y+CD+C ++FK K+ L H T + YKC +CG F K +L H IH G + Y+C+ C F + L+ H H T P CE CGK F +K + H++ + + +EC +C K F+ K L+ HQR H + + ++ E FS+ L V T KP+KC+ CG FSQ+ LR H++ H
Sbjct: 391 EKPYECPECGKAFSEKSRLRKHQR-THTGEKPYKCDGCDKAFS----------------AKSGLRIHQRTHTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRKHHRT--HTGEKPYKCNQCGKAFGQKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRTH-TGEKPYQCEECGKTFRQKSNLRGHQRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCG-----EAFSQKSNLRVHQRTHTGEKPYKCDKCGRTFSQKSSLREHQKAH 696 HSP 2 Score: 111.694 bits (278), Expect = 3.970e-25 Identity = 73/229 (31.88%), Postives = 109/229 (47.60%), Query Frame = -1
Query: 552 HSTTTQFKCKKCEETFPVKSALNKHLKTH-GDNLYECDKCNESFKFKTELHSHKVTVHNASTYAYKCGECGAHFETKDELSFHFIIHQGAQKYQCDKCCRYFGSEIELKFHADEHMTWSIPLPCEACGKEFTEKFDF-ENHKKFSKCRTFECAQCDKLFATKLELKNHQREHDVIETXXXXXXXXXYPKEGFSEDVYLGVMSVTKPFKCNVCGERFSQEEKLRTHKRTH 1232
H+ ++C +C + F KS L KH +TH G+ Y+CD C+++F K+ L H+ T + ++C ECG F K L H H G + ++C++C + F L+ H H T P C+ CGK F K ++H+ + + ++C QC K F K +L+ H R H + KP+KCN CGE FSQ+ LR H RTH
Sbjct: 388 HTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRT--HTGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTH-TGERPYKCDECGKAFKLKSGLRKHHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIH-----------------------------TGEKPYKCNHCGEAFSQKSNLRVHHRTH 584 HSP 3 Score: 90.8929 bits (224), Expect = 1.292e-18 Identity = 70/221 (31.67%), Postives = 104/221 (47.06%), Query Frame = -1
Query: 552 CEETFPVKSALNKHLKTH-GDNLYECDKCNESFKFKTELHSHKVTVHNAST--YAYKCGECGAHFETKDELSFHFIIHQGAQKYQCDKCCRYFGSEIELKFHADEHMTWSIPLPCEACGKEFTEKFDFENHKK-FSKCRTFECAQCDKLFATKLELKNHQREHDVIETXX-XXXXXXXYPKEGFSEDVYLGVMSVTKPFKCNVCGERFSQEEKLRTHKRTH 1199
C ETF +S + H K H YE ++C +S ++SH + + T Y+C ECG F K L H H G + Y+CD C + F ++ L+ H H T P C CGK F K H++ + + FEC +C K F+ L+NH+R H +++ K G + + + KP+KCN CG+ F Q+ +LR H R H
Sbjct: 343 CTETFSYQSTFSVHQKVHIRAKPYEYNECGKS----CSMNSHLIWPQKSHTGEKPYECPECGKAFSEKSRLRKHQRTHTGEKPYKCDGCDKAFSAKSGLRIHQRTH-TGEKPFECHECGKSFNYKSILIVHQRTHTGEKPFECNECGKSFSHMSGLRNHRRTHTGERPYKCDECGKAFKLKSGLRK--HHRTHTGEKPYKCNQCGKAFGQKSQLRGHHRIH 556 HSP 4 Score: 83.5741 bits (205), Expect = 2.546e-16 Identity = 63/188 (33.51%), Postives = 90/188 (47.87%), Query Frame = -1
Query: 969 EKEFGCTKCGRYFASKQKLSTHIRISHKHSKAFQCQECGKCFEWXXXXXXXXXXXASQKEKFLLKLKGESHSNDK-VPCHICNK-FYSKHNLQRHINNKHSTTTQFKCKKCEETFPVKSALNKHLKTH-GDNLYECDKCNESFKFKTELHSHKVTVHNASTYAYKCGECGAHFETKDELSFHFIIHQG 1523
EK + C +CG+ F K +L H RI H K ++C CG+ F SQK L++ +H+ +K C C K F K NL+ H H+ ++C +C + F KS L KH +TH G+ Y C++C E+F K+ L H+ T + YKC +CG F K L H H G
Sbjct: 531 EKPYKCNQCGKAFGQKSQLRGHHRI-HTGEKPYKCNHCGEAF--------------SQKSN--LRVHHRTHTGEKPYQCEECGKTFRQKSNLRGH-QRTHTGEKPYECNECGKAFSEKSVLRKHQRTHTGEKPYNCNQCGEAFSQKSNLRVHQRT--HTGEKPYKCDKCGRTFSQKSSLREHQKAHPG 698 The following BLAST results are available for this feature:
BLAST of TCONS_00070720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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