TCONS_00070714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070714
Unique NameTCONS_00070714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070714 ID=TCONS_00070714|Name=TCONS_00070714|organism=Clytia hemisphaerica|type=transcript|length=639bp
ttttcataaagCTCTAAACCAGAAGGTGGCAGGTTTTCTTTCTTATTCTT
AATGCTGATATCTTAATAATGATATGGCTGCTTTGCTAGTAAGTAAGTAA
CAGCTTGCTTAGCTTTAAGTCGTGCTTCAATAAAGTGAACAGTCCTGTAC
TTAAGTGCGATCGTGACCTCTTATAGTATGTTGGTGAAAATCTACAAGCC
GTGTAAAGCATTTACCACAAACTTTACATTCaaattatttgacatttttt
tcttgatttaagaATTCACATAGCTTATTTAGTGCTAAGACAGGTCTTGT
AGGTTCATAGGTTCAAGTACTATCTttcgtttaaaaaatataatcttttt
tgTGATGGCAGTTTTGTGGCAGTTTTggtttttccttctttaaattAAAC
ATCGTCCAAAAAAGGAGTCGcattaaaataaactaaacTACCCAATGGTT
CTTCTTTGATTTCAACTTTAACATCAATATTATCGACATCCAACATTCCA
TAAAAATTGTTGTACTGTATTCATGGAATTGGAACTAAAGCGAGATTTGA
AATGAGAAAATTGTAACTGAAGGTTTGAACTAAGGAATGCCATGAACTAA
CTAACGATATGGTGCATATTGAATGTatttaaaatgaag
Run BLAST on NCBI

transcript from alignment at scaffold_57:10466..11104

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070714 ID=TCONS_00070714|Name=TCONS_00070714|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at scaffold_57:10466..11104 (Clytia hemisphaerica)
cttcattttaaatACATTCAATATGCACCATATCGTTAGTTAGTTCATGG
CATTCCTTAGTTCAAACCTTCAGTTACAATTTTCTCATTTCAAATCTCGC
TTTAGTTCCAATTCCATGAATACAGTACAACAATTTTTATGGAATGTTGG
ATGTCGATAATATTGATGTTAAAGTTGAAATCAAAGAAGAACCATTGGGT
AgtttagtttattttaatgCGACTCCTTTTTTGGACGATGTTTaatttaa
agaaggaaaaaccAAAACTGCCACAAAACTGCCATCAcaaaaaagattat
attttttaaacgaaAGATAGTACTTGAACCTATGAACCTACAAGACCTGT
CTTAGCACTAAATAAGCTATGTGAATtcttaaatcaagaaaaaaatgtca
aataatttGAATGTAAAGTTTGTGGTAAATGCTTTACACGGCTTGTAGAT
TTTCACCAACATACTATAAGAGGTCACGATCGCACTTAAGTACAGGACTG
TTCACTTTATTGAAGCACGACTTAAAGCTAAGCAAGCTGTTACTTACTTA
CTAGCAAAGCAGCCATATCATTATTAAGATATCAGCATTAAGAATAAGAA
AGAAAACCTGCCACCTTCTGGTTTAGAGctttatgaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043990XLOC_043990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070714-exon-scaffold_57-1491911889:10466..11104TCONS_00070714-exon-scaffold_57-1491911889:10466..11104Clytia hemisphaericaexon
TCONS_00070714-exon-scaffold_57-1510915933:10466..11104TCONS_00070714-exon-scaffold_57-1510915933:10466..11104Clytia hemisphaericaexon
TCONS_00070714-exon-scaffold_57-1575043694:10466..11104TCONS_00070714-exon-scaffold_57-1575043694:10466..11104Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:10466..11104 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0825064	0.24137	0	0	0.778851	0.175845	0.21215	0.496531	0.347633	0.344479	0.50154	0.43959	0.713341	0.113971	0.327949	0.0502771	0.185812	0.380902	0	0.275334	0.957262	0.583649	0	0	0.26575	0.237176	0.45253	0.120738	0.0915756	0.279903
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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