TCONS_00070713 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070713
Unique NameTCONS_00070713
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070713 ID=TCONS_00070713|Name=TCONS_00070713|organism=Clytia hemisphaerica|type=transcript|length=592bp
GAGTTTAATGCCTTATGTTTTTATTCCATTTCCTATGATACAAGGAGTAT
ACTCTGGTACCAACCATCAAACAACAAAACTATTCGTGCATATTGTAATC
AGTAGTGTGGTTGCTTGTTNATTACATTTataggaatttaatttttcgtG
TAAATTAAGATGCTTCTTTAAGTATGCTTTCTGGGAAAAACTTTTACCAC
ATTCCTTGCATTGAAATGTGTCCATGGATGGCGATGAGACAAAAGATGGT
TGAATATTACCAGGTATCTTAAAGGGATTTGGTTCATATGAAGATTGTTC
TGATCCTGAAAACATTAAATGTTGCTCTGATGATTCAACTAAAAATGGCT
CTTGGTCAATCATATGTGGCTCTGCTTCAAGCAAATTTTCTGATTCAATG
ATATTTTCAACTTCAAACCATTCTCCTACTTCTTCCTTTATTTCGATCTT
TATTTCAtccattttttttaactttatttcatttctcaaattttaatatt
acctgaaacgaaacaaaaaagaaaatttgtaagtataaagaaaaaggaaa
gctATAACCTAGCAGCATCTTGAAACAGCAGCCAGTCGAGGG
Run BLAST on NCBI

protein sequence of TCONS_00070713-protein

>TCONS_00070713-protein ID=TCONS_00070713-protein|Name=TCONS_00070713-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MDEIKIEIKEEVGEWFEVENIIESENLLEAEPHMIDQEPFLVESSEQHLM
FSGSEQSSYEPNPFKIPGNIQPSFVSSPSMDTFQCKECGKSFSQKAYLKK
HLNLHEKLNSYKCNXQATTLLITICTNSFVV
Run BLAST on NCBI

transcript from alignment at scaffold_57:2258..2849

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070713 ID=TCONS_00070713|Name=TCONS_00070713|organism=Clytia hemisphaerica|type=transcript|length=592bp|location=Sequence derived from alignment at scaffold_57:2258..2849 (Clytia hemisphaerica)
CCCTCGACTGGCTGCTGTTTCAAGATGCTGCTAGGTTATagctttccttt
ttctttatacttacaaattttcttttttgtttcgtttcaggtaatattaa
aatttgagaaatgaaataaagttaaaaaaaatggaTGAAATAAAGATCGA
AATAAAGGAAGAAGTAGGAGAATGGTTTGAAGTTGAAAATATCATTGAAT
CAGAAAATTTGCTTGAAGCAGAGCCACATATGATTGACCAAGAGCCATTT
TTAGTTGAATCATCAGAGCAACATTTAATGTTTTCAGGATCAGAACAATC
TTCATATGAACCAAATCCCTTTAAGATACCTGGTAATATTCAACCATCTT
TTGTCTCATCGCCATCCATGGACACATTTCAATGCAAGGAATGTGGTAAA
AGTTTTTCCCAGAAAGCATACTTAAAGAAGCATCTTAATTTACacgaaaa
attaaattcctatAAATGTAATNAACAAGCAACCACACTACTGATTACAA
TATGCACGAATAGTTTTGTTGTTTGATGGTTGGTACCAGAGTATACTCCT
TGTATCATAGGAAATGGAATAAAAACATAAGGCATTAAACTC

Coding sequence (CDS) from alignment at scaffold_57:2258..2849

>TCONS_00070713 ID=TCONS_00070713|Name=TCONS_00070713|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_57:2258..2849 (Clytia hemisphaerica)
atggaTGAAATAAAGATCGAAATAAAGGAAGAAGTAGGAGAATGGTTTGA
AGTTGAAAATATCATTGAATCAGAAAATTTGCTTGAAGCAGAGCCACATA
TGATTGACCAAGAGCCATTTTTAGTTGAATCATCAGAGCAACATTTAATG
TTTTCAGGATCAGAACAATCTTCATATGAACCAAATCCCTTTAAGATACC
TGGTAATATTCAACCATCTTTTGTCTCATCGCCATCCATGGACACATTTC
AATGCAAGGAATGTGGTAAAAGTTTTTCCCAGAAAGCATACTTAAAGAAG
CATCTTAATTTACacgaaaaattaaattcctatAAATGTAATNAACAAGC
AACCACACTACTGATTACAATATGCACGAATAGTTTTGTTGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043989XLOC_043989Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070713-proteinTCONS_00070713-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070713-exon-scaffold_57-1491911889:2258..2849TCONS_00070713-exon-scaffold_57-1491911889:2258..2849Clytia hemisphaericaexon
TCONS_00070713-exon-scaffold_57-1510915933:2258..2849TCONS_00070713-exon-scaffold_57-1510915933:2258..2849Clytia hemisphaericaexon
TCONS_00070713-exon-scaffold_57-1575043694:2258..2849TCONS_00070713-exon-scaffold_57-1575043694:2258..2849Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:2258..2849 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.77894	2.52924	1.1537	0.923494	10.8679	6.81114	5.35914	5.46313	2.18564	2.4172	3.94161	2.2826	1.97139	1.66344	2.94555	2.25787	5.07627	3.06479	1.37857	1.64865	1.79122	2.75214	2.44281	4.73141	2.08853	2.75157	2.79435	0.855697	1.2964	1.78076
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070713 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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