TCONS_00070711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070711
Unique NameTCONS_00070711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070711 ID=TCONS_00070711|Name=TCONS_00070711|organism=Clytia hemisphaerica|type=transcript|length=529bp
AAATTCGAAGTTTGGAATTATCAAATTGTGTTTTGTGTTCGAAAGTGATA
GTCACGTCGAGCGCAATAGAGATAAACAGTTTAAATCGTATCAGTTTGAA
AGTGTATTCATCGCAAAAATGTCATTCGTAAATGTTCGAAATGACATTTC
CGGCAAATATTTGTCGAAAAATCAGGAGAATCAATACAATATTGGTTCTG
CAAACAATGCACAAGACGTTGCACGTTTGCAACGAATGGTGCAAAACCTC
ACAGCTGAGAACGCGAAGTTGAAACTCAATGTTCAATCGCTGAGCTCAGA
TCTGTCAACGAGCAACAAAGAAGTCGACTCAATCAAGACTGAATTTGGCA
GGCTCGTCAAGAAAGGTCTCATTCAAAAACAGAAGTCTTCTCAAGAGAGA
GATNTTCGTCAAGAAAAGTCTCATTGAAAAACAGAAATCTAATCAACAGA
GAGATTCGTTGTCTACAAAGATCGCTGATCTGAATCAAGAACTGGCTTCT
CTTCAAAACGACTTGAACATCTCCCGCGG
Run BLAST on NCBI

protein sequence of TCONS_00070711-protein

>TCONS_00070711-protein ID=TCONS_00070711-protein|Name=TCONS_00070711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
NSKFGIIKLCFVFESDSHVERNRDKQFKSYQFESVFIAKMSFVNVRNDIS
GKYLSKNQENQYNIGSANNAQDVARLQRMVQNLTAENAKLKLNVQSLSSD
LSTSNKEVDSIKTEFGRLVKKGLIQKQKSSQERDXRQEKSH
Run BLAST on NCBI

transcript from alignment at scaffold_57:831771..832617-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070711 ID=TCONS_00070711|Name=TCONS_00070711|organism=Clytia hemisphaerica|type=transcript|length=847bp|location=Sequence derived from alignment at scaffold_57:831771..832617- (Clytia hemisphaerica)
AAATTCGAAGTTTGGAATTATCAAATTGTGTTTTGTGTTCGAAAGTGATA
GTCACGTCGAGCGCAATAGAGATAAACAGTTTAAATCGTATCAGTTTGAA
AGTGTATTCATCGCAAAAATGTCATTCGTAAATGTTCGAAATGACATTTC
CGGCAAATATTTGTCGAAAAATCAGGAGAATCAATACAATATTGGTTCTG
CAAACAATGCACAAGACGTTGCACGTTTGCAACGAATGGTGCAAAACCTC
ACAGCTGAGAACGCGAAGTTGAAACTCAATGTTCAATCGCTGAGCTCAGA
TCTGTCAACGAGCAACAAAGAAGTCGACTCAATCAAGACTGAATTTGGCA
GGCTCGTCAAGAAAGGTCTCATTCAAAAACAGAAGTCTTCTCAAGAGAGA
GATNTTCGTCAAGAAAAGTCTCATTGAAAAACAGAAATCTAATCAACAGA
GAGATTCGTTGTCTACAAAGATCGCTGATCTGAATCAAGAACTGGCTTCT
CTTCAAAACGACTTGAACATCTCCCACGGTGAAAAAGAAAACATCAAAGC
CGAAGTTGGAAAGCTCATCAAGAAGAGTCTCATTGAAAAACAGAAGTCTT
CTCAAGAGAGAGATTCGTTGTCTGCAAAGATTGCTGATCTCAATCAAGAA
CTGGCTTCTCTTCAAAACGACTTGAACATCTCCCGCAGTGAGAAAGATAA
TATCAAAGCCGAAGTTGGAAAGCTCATCAAGAAGAGTCTCATTGAAAAAC
AGAAGTCTTCTCAAGAGAGAGATTCGTTGTCTGCAAAGATTGTTGATCTC
AATCAAGAACTGGCTTCTCTTCAAAACGACTTGAACATCTCCCGCGG

Coding sequence (CDS) from alignment at scaffold_57:831771..832617-

>TCONS_00070711 ID=TCONS_00070711|Name=TCONS_00070711|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_57:831771..832617- (Clytia hemisphaerica)
AATTCGAAGTTTGGAATTATCAAATTGTGTTTTGTGTTCGAAAGTGATAG
TCACGTCGAGCGCAATAGAGATAAACAGTTTAAATCGTATCAGTTTGAAA
GTGTATTCATCGCAAAAATGTCATTCGTAAATGTTCGAAATGACATTTCC
GGCAAATATTTGTCGAAAAATCAGGAGAATCAATACAATATTGGTTCTGC
AAACAATGCACAAGACGTTGCACGTTTGCAACGAATGGTGCAAAACCTCA
CAGCTGAGAACGCGAAGTTGAAACTCAATGTTCAATCGCTGAGCTCAGAT
CTGTCAACGAGCAACAAAGAAGTCGACTCAATCAAGACTGAATTTGGCAG
GCTCGTCAAGAAAGGTCTCATTCAAAAACAGAAGTCTTCTCAAGAGAGAG
ATNTTCGTCAAGAAAAGTCTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043987XLOC_043987Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070711-proteinTCONS_00070711-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070711-exon-scaffold_57-1575043694:832100..832617TCONS_00070711-exon-scaffold_57-1575043694:832100..832617Clytia hemisphaericaexon
TCONS_00070711-exon-scaffold_57-1575043694:831771..831781TCONS_00070711-exon-scaffold_57-1575043694:831771..831781Clytia hemisphaericaexon
TCONS_00070711-exon-scaffold_57-1510915933:832100..832617TCONS_00070711-exon-scaffold_57-1510915933:832100..832617Clytia hemisphaericaexon
TCONS_00070711-exon-scaffold_57-1510915933:831771..831781TCONS_00070711-exon-scaffold_57-1510915933:831771..831781Clytia hemisphaericaexon
TCONS_00070711-exon-scaffold_57-1491911889:832100..832617TCONS_00070711-exon-scaffold_57-1491911889:832100..832617Clytia hemisphaericaexon
TCONS_00070711-exon-scaffold_57-1491911889:831771..831781TCONS_00070711-exon-scaffold_57-1491911889:831771..831781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:831771..832617 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.00424	0.996553	0	0	0.427614	0.154249	0	0.231447	0	0.147675	0	0	0.0629545	0.341663	0.249684	0.0787442	0	0.123327	0	0.313711	0	0	0	0	0.456066	0.324484	0	0.250747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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