TCONS_00070709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070709
Unique NameTCONS_00070709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070709 ID=TCONS_00070709|Name=TCONS_00070709|organism=Clytia hemisphaerica|type=transcript|length=292bp
caaaGCCGAAGTTGGAAAGCTCATCAAGAAGAGTCTCATTGAAAAACAGA
AGTCTTCTCAAGAGAGAGATTCGTTGTCTGCAAAGATTGCTGATCTCAAT
CAAGAACTGGCTTCTCTTCAAAACGACTTGAACATCTCCCGCGGTGAGAA
AGATAATATCAAAGCCGAATTGGGCAAGCTCATCAAGAAAAACCTCGTTC
AAAAACAGAAGTCTTCTCAAGAGAGAGATTTGTTGTCTGCAAAGATCGCT
GATCTCAATCAAGAATTGGTTTATGTTCAACAAAAATTGCAC
Run BLAST on NCBI

transcript from alignment at scaffold_57:831464..832073-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070709 ID=TCONS_00070709|Name=TCONS_00070709|organism=Clytia hemisphaerica|type=transcript|length=610bp|location=Sequence derived from alignment at scaffold_57:831464..832073- (Clytia hemisphaerica)
CAAAGCCGAAGTTGGAAAGCTCATCAAGAAGAGTCTCATTGAAAAACAGA
AGTCTTCTCAAGAGAGAGATTCGTTGTCTGCAAAGATTGCTGATCTCAAT
CAAGAACTGGCTTCTCTTCAAAACGACTTGAACATCTCCCGCAGTGAGAA
AGATAATATCAAAGCCGAAGTTGGAAAGCTCATCAAGAAGAGTCTCATTG
AAAAACAGAAGTCTTCTCAAGAGAGAGATTCGTTGTCTGCAAAGATTGTT
GATCTCAATCAAGAACTGGCTTCTCTTCAAAACGACTTGAACATCTCCCG
CGGTGAGAAACAAAACATCAAAGCCGAAGTTGGAAAGCTCATCAAGAAAA
GTCTCATTGAAAAACAGAAGTCTTCTCAAGAGAGAGATTCGTTGTCTGCA
AAGATTGCTGATCTCAATAAAGAACTGGCTTCTCTTCAAAACGACTTGAA
CATCTCCCGCGGTGAGAAAGATAATATCAAAGCCGAATTGGGCAAGCTCA
TCAAGAAAAACCTCGTTCAAAAACAGAAGTCTTCTCAAGAGAGAGATTTG
TTGTCTGCAAAGATCGCTGATCTCAATCAAGAATTGGTTTATGTTCAACA
AAAATTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043987XLOC_043987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070709-exon-scaffold_57-1575043694:831941..832073TCONS_00070709-exon-scaffold_57-1575043694:831941..832073Clytia hemisphaericaexon
TCONS_00070709-exon-scaffold_57-1575043694:831464..831622TCONS_00070709-exon-scaffold_57-1575043694:831464..831622Clytia hemisphaericaexon
TCONS_00070709-exon-scaffold_57-1510915933:831941..832073TCONS_00070709-exon-scaffold_57-1510915933:831941..832073Clytia hemisphaericaexon
TCONS_00070709-exon-scaffold_57-1510915933:831464..831622TCONS_00070709-exon-scaffold_57-1510915933:831464..831622Clytia hemisphaericaexon
TCONS_00070709-exon-scaffold_57-1491911889:831941..832073TCONS_00070709-exon-scaffold_57-1491911889:831941..832073Clytia hemisphaericaexon
TCONS_00070709-exon-scaffold_57-1491911889:831464..831622TCONS_00070709-exon-scaffold_57-1491911889:831464..831622Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:831464..832073 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15029	0.722022	2.74454	1.41349	0.423955	0.105065	0	0	0.26492	1.42914	2.58981	0.763128	0.214092	1.17703	0	0.678702	0.639651	0	0	0.349706	0.715876	0.44478	0.488487	0.444106	0	0.925388	1.01526	2.49383	0.224999	0.963559
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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