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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070696 ID=TCONS_00070696|Name=TCONS_00070696|organism=Clytia hemisphaerica|type=transcript|length=1295bp
AATGgattcaataaaatattttggtgtCAGGGCTTTTGGGGATTCTCAAA
AACATGTTAAAAGGCAAAGGATTTTGGAAAGTTCAAAAGGACGTTTATTT
CGTAAAATGTCTATAActtaaaaaatcatgaaatagaTGTGTGTGGGTAA
GATCTGGCAAGcgtattttgttttctttttgaaaatcgggtTCCGTCTCA
TTCGAGCGTTAATGGCTTAAGGCTACAGAGCAAAAAATCTAATAACTAAC
CAACTAACGAGCAAACAGGGTCTATTTATAGGACCTCCTCAGTTAGTTCC
TTTGTCTGATATTTTGTTGTCGTTAAGAGCAATAAAAGTAGGTAGCATGT
TATCTTCACAGCTGTTGCTATGTACAGAATCTTCTTCTTCGAAGTTAGTT
TCGTCTTGAGAAGATATTTTAGAGTCCCCACCAATAGTTTTGTTATGTTC
AATAAAATCACTCATTTGTGAGAAGTCCCCTTCTTTTGTGTGAACCTTTA
TATGCCTTGCAAGATGGTCTTTCCTGCCAAATTTCTTACCACACTCAGTG
CATTCAAATGGTctcaattttttatgaacaGTATCATGATGTAGTTTAAG
TTTATCTCTTTTGTGAAATCGAAGCCCACAATCATCACATTCAAACTTCC
TCTCTCTTGCCTCTACTTGCTCTGTCTGCTCTCGGTAATTCTGTTGGTCA
AGGTCTTTTTCATCAACCAACTGCATCGGCTCCACATAAACAATATCATC
ACCATGAAGTATCTCATTGTAGGCTGTAGAAGATCTTTCCTCTACTTCGA
TTTTAATCATTAGATTACCTTCTTCGAGTGGTTCAATTAGGGAGCTATTA
TTTTCATGCTCATTGTGACATGTTTGTGGGCAATTTTTCTTAATTGGCTG
CTCATGTTCAGtattatctttaaaaatttgattaccaTTCTCAGTTAGCG
GTTCTCGGGTTTCTTCATCATCCTCCCTCTGGCAAGCCCAATTGCTTGGT
TTAAAAACTAAACTATTTTGACCTAGATCTTTCAGCTCCAAACTTGTATC
AAAACTTTCCAAGGTGACTTTAAATAAACCAATAATGTTGCCATTGGATT
TGATATTAAAAGATAACTCAATGGGAGTAATTGATTCTTCACATCCAACT
TTTACCGggaatttaattgaaacatctCCAAATTCAAAATTCATCTTTTA
AAGAAATAGATGCAAATACTTTTATCacgatttttgacaatttttgacaa
tcaACCAATTCCTTTGCAAATGTGGCGATTCTTCTGCCTTTTTTG Run BLAST on NCBI transcript from alignment at scaffold_57:618144..619796- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070696 ID=TCONS_00070696|Name=TCONS_00070696|organism=Clytia hemisphaerica|type=transcript|length=1653bp|location=Sequence derived from alignment at scaffold_57:618144..619796- (Clytia hemisphaerica)
AATGGATTCAATAAAATATTTTGGTGTCAGGGCTTTTGGGGATTCTCAAA
AACATGTTAAAAGGCAAAGGATTTTGGAAAGTTCAAAAGGACGTTTATTT
CGTAAAATGTCTATAACTTAAAAAATCATGAAATAGATGTGTGTGGGTAA
GATCTGGCAAGCGTATTTTGTTTTCTTTTTGAAAATCGGGTTCCGTCTCA
TTCGAGCGTTAATGGCTTAAGGCTACAGAGCAAAAAATCTAATAACTAAC
CAACTAACGAGCAAACAGGGTCTATTTATAGGACCTCCTCAGTTAGTTCC
TTTGTCTGATATTTTGTTGTCGTTAAGAGCAATAAAAGTAGGTAGCATGT
TATCTTCACAGCTGTTGCTATGTACAGAATCTTCTTCTTCGAAGTTAGTT
TCGTCTTGAGAAGATATTTTAGAGTCCCCACCAATAGTTTTGTTATGTTC
AATAAAATCACTCATTTGTGAGAAGTCCCCTTCTTTTGTGTGAACCTTTA
TATGCCTTGCAAGATGGTCTTTCCTGCCAAATTTCTTACCACACTCAGTG
CATTCAAATGGTCTCAATTTTTTATGAACAGTATCATGATGTAGTTTAAG
TTTATCTCTTTTGTGAAATCGAAGCCCACAATCATCACATTGAAACTTTC
TCCCTTTTATTTCTACTTGCTCTACAAGTTCTTGGTAATTTTGTTGGTCA
ATTTCAACTTTGACTTTATTCTTGTTAATTTTTTCGTCTCGTTGTTTGTC
ACCTGCTTTCTGGAAATTTTCATCAATTCCATTCCCTGGTATCTTATCAT
TCTGGCAATGATTCTCTGGCAAACATATAATAGGTATTAACTTTAGTGTG
AACCTTTACATGTCTCGCGAGATGGTCTTTCCTGCCAAATTTTTTCCCAC
ATTCCTGACATTCAAAACGTTTCAATCCTTTATGAACAGTATCATGATGC
ATTTTAAGTTTATCTCTTTTGTAAAATTGAATCCCACAATCATTACATTC
AAACTTCCTCTCTCTTGCCTCTACTTGCTCTGTCTGCTCTCGGTAATTCT
GTTGGTCAAGGTCTTTTTCATCAACCAACTGCATCGGCTCCACATAAACA
ATATCATCACCATGAAGTATCTCATTGTAGGCTGTAGAAGATCTTTCCTC
TACTTCGATTTTAATCATTAGATTACCTTCTTCGAGTGGTTCAATTAGGG
AGCTATTATTTTCATGCTCATTGTGACATGTTTGTGGGCAATTTTTCTTA
ATTGGCTGCTCATGTTCAGTATTATCTTTAAAAATTTGATTACCATTCTC
AGTTAGCGGTTCTCGGGTTTCTTCATCATCCTCCCTCTGGCAAGCCCAAT
TGCTTGGTTTAAAAACTAAACTATTTTGACCTAGATCTTTCAGCTCCAAA
CTTGTATCAAAACTTTCCAAGGTGACTTTAAATAAACCAATAATGTTGCC
ATTGGATTTGATATTAAAAGATAACTCAATGGGAGTAATTGATTCTTCAC
ATCCAACTTTTACCGGGAATTTAATTGAAACATCTCCAAATTCAAAATTC
ATCTTTTAAAGAAATAGATGCAAATACTTTTATCACGATTTTTGACAATT
TTTGACAATCAACCAATTCCTTTGCAAATGTGGCGATTCTTCTGCCTTTT
TTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070696-exon-scaffold_57-1575043694:619159..619796 | TCONS_00070696-exon-scaffold_57-1575043694:619159..619796 | Clytia hemisphaerica | exon |
| TCONS_00070696-exon-scaffold_57-1575043694:618144..618800 | TCONS_00070696-exon-scaffold_57-1575043694:618144..618800 | Clytia hemisphaerica | exon |
| TCONS_00070696-exon-scaffold_57-1510915933:619159..619796 | TCONS_00070696-exon-scaffold_57-1510915933:619159..619796 | Clytia hemisphaerica | exon |
| TCONS_00070696-exon-scaffold_57-1510915933:618144..618800 | TCONS_00070696-exon-scaffold_57-1510915933:618144..618800 | Clytia hemisphaerica | exon |
| TCONS_00070696-exon-scaffold_57-1491911889:619159..619796 | TCONS_00070696-exon-scaffold_57-1491911889:619159..619796 | Clytia hemisphaerica | exon |
| TCONS_00070696-exon-scaffold_57-1491911889:618144..618800 | TCONS_00070696-exon-scaffold_57-1491911889:618144..618800 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:618144..619796 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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