TCONS_00070695 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070695
Unique NameTCONS_00070695
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070695 ID=TCONS_00070695|Name=TCONS_00070695|organism=Clytia hemisphaerica|type=transcript|length=1868bp
attaaaaaaattaaaatcataagAAAATAGATTCATCTGATGGCTGTTGG
TAGAGCCTGGAGCGAGCGAGTCTCCTTTTCTATTTAcactagactatgct
atagtctaagaccaatcattatctaagaattaagcccaaagccgaagaaa
attcgcaaacaagtttttttttgccaaattgaGTTAACAGCCAGTAGATT
CAATGgattcaataaaatattttggtgtCAGGGCTTTTGGGGATTCTCAA
AAACATGTTAAAAGGCAAAGGATTTTGGAAAGTTCAAAAGGACGTTTATT
TCGTAAAATGTCTATAActtaaaaaatcatgaaatagaTGTGTGTGGGTA
AGATCTGGCAAGcgtattttgttttctttttgaaaatcgggtTCCGTCTC
ATTCGAGCGTTAATGGCTTAAGGCTACAGAGCAAAAAATCTAATAACTAA
CCAACTAACGAGCAAACAGGGTCTATTTATAGGACCTCCTCAGTTAGTTC
CTTTGTCTGATATTTTGTTGTCGTTAAGAGCAATAAAAGTAGGTAGCATG
TTATCTTCACAGCTGTTGCTATGTACAGAATCTTCTTCTTCGAAGTTAGT
TTCGTCTTGAGAAGATATTTTAGAGTCCCCACCAATAGTTTTGTTATGTT
CAATAAAATCACTCATTTGTGAGAAGTCCCCTTCTTTTGTGTGAACCTTT
ATATGCCTTGCAAGATGGTCTTTCCTGCCAAATTTCTTACCACACTCAGT
GCATTCAAATGGTctcaattttttatgaacaGTATCATGATGTAGTTTAA
GTTTATCTCTTTTGTGAAATCGAAGCCCACAATCATCACATTGAAACTTT
CTCCCTTTTATTTCTACTTGCTCTACAAGTTCTTGGTAATTTTGTTGGTC
AATTTCAACTTTGACTTTATTCTTGTTAATTTTTTCGTCTCGTTGTTTGT
CACCTGctttctggaaattttcatcaattccATTCCCTGGTATCTTATCA
TTCTGGCAATGATTCTCTGGCAAACATATAATAGGTAttaacTTTAGTGT
GAACCTTTACATGTCTCGCGAGATGGTCTTTCCTGCCAAATTTTTTCCCA
CATTCCTGACATTCAAAACGTTTCAATCCTTTATGAACAGTATCATGATG
CATTTTAAGTTTATCTCTTTTGTAAAATTGAATCCCACAATCATTACATT
CAAACTTCCTCTCTCTTGCCTCTACTTGCTCTGTCTGCTCTCGGTAATTC
TGTTGGTCAAGGTCTTTTTCATCAACCAACTGCATCGGCTCCACATAAAC
AATATCATCACCATGAAGTATCTCATTGTAGGCTGTAGAAGATCTTTCCT
CTACTTCGATTTTAATCATTAGATTACCTTCTTCGAGTGGTTCAATTAGG
GAGCTATTATTTTCATGCTCATTGTGACATGTTTGTGGGCAATTTTTCTT
AATTGGCTGCTCATGTTCAGtattatctttaaaaatttgattaccaTTCT
CAGTTAGCGGTTCTCGGGTTTCTTCATCATCCTCCCTCTGGCAAGCCCAA
TTGCTTGGTTTAAAAACTAAACTATTTTGACCTAGATCTTTCAGCTCCAA
ACTTGTATCAAAACTTTCCAAGGTGACTTTAAATAAACCAATAATGTTGC
CATTGGATTTGATATTAAAAGATAACTCAATGGGAGTAATTGATTCTTCA
CATCCAACTTTTACCGggaatttaattgaaacatctCCAAATTCAAAATT
CATCTTTTAAAGAAATAGATGCAAATACTTTTATCacgatttttgacaat
ttttgacaatcaACCAATTCCTTTGCAAATGTGGCGATTCTTCTGCCTTT
TTTGTTacgattttaatt
Run BLAST on NCBI

transcript from alignment at scaffold_57:618130..619997-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070695 ID=TCONS_00070695|Name=TCONS_00070695|organism=Clytia hemisphaerica|type=transcript|length=1868bp|location=Sequence derived from alignment at scaffold_57:618130..619997- (Clytia hemisphaerica)
ATTAAAAAAATTAAAATCATAAGAAAATAGATTCATCTGATGGCTGTTGG
TAGAGCCTGGAGCGAGCGAGTCTCCTTTTCTATTTACACTAGACTATGCT
ATAGTCTAAGACCAATCATTATCTAAGAATTAAGCCCAAAGCCGAAGAAA
ATTCGCAAACAAGTTTTTTTTTGCCAAATTGAGTTAACAGCCAGTAGATT
CAATGGATTCAATAAAATATTTTGGTGTCAGGGCTTTTGGGGATTCTCAA
AAACATGTTAAAAGGCAAAGGATTTTGGAAAGTTCAAAAGGACGTTTATT
TCGTAAAATGTCTATAACTTAAAAAATCATGAAATAGATGTGTGTGGGTA
AGATCTGGCAAGCGTATTTTGTTTTCTTTTTGAAAATCGGGTTCCGTCTC
ATTCGAGCGTTAATGGCTTAAGGCTACAGAGCAAAAAATCTAATAACTAA
CCAACTAACGAGCAAACAGGGTCTATTTATAGGACCTCCTCAGTTAGTTC
CTTTGTCTGATATTTTGTTGTCGTTAAGAGCAATAAAAGTAGGTAGCATG
TTATCTTCACAGCTGTTGCTATGTACAGAATCTTCTTCTTCGAAGTTAGT
TTCGTCTTGAGAAGATATTTTAGAGTCCCCACCAATAGTTTTGTTATGTT
CAATAAAATCACTCATTTGTGAGAAGTCCCCTTCTTTTGTGTGAACCTTT
ATATGCCTTGCAAGATGGTCTTTCCTGCCAAATTTCTTACCACACTCAGT
GCATTCAAATGGTCTCAATTTTTTATGAACAGTATCATGATGTAGTTTAA
GTTTATCTCTTTTGTGAAATCGAAGCCCACAATCATCACATTGAAACTTT
CTCCCTTTTATTTCTACTTGCTCTACAAGTTCTTGGTAATTTTGTTGGTC
AATTTCAACTTTGACTTTATTCTTGTTAATTTTTTCGTCTCGTTGTTTGT
CACCTGCTTTCTGGAAATTTTCATCAATTCCATTCCCTGGTATCTTATCA
TTCTGGCAATGATTCTCTGGCAAACATATAATAGGTATTAACTTTAGTGT
GAACCTTTACATGTCTCGCGAGATGGTCTTTCCTGCCAAATTTTTTCCCA
CATTCCTGACATTCAAAACGTTTCAATCCTTTATGAACAGTATCATGATG
CATTTTAAGTTTATCTCTTTTGTAAAATTGAATCCCACAATCATTACATT
CAAACTTCCTCTCTCTTGCCTCTACTTGCTCTGTCTGCTCTCGGTAATTC
TGTTGGTCAAGGTCTTTTTCATCAACCAACTGCATCGGCTCCACATAAAC
AATATCATCACCATGAAGTATCTCATTGTAGGCTGTAGAAGATCTTTCCT
CTACTTCGATTTTAATCATTAGATTACCTTCTTCGAGTGGTTCAATTAGG
GAGCTATTATTTTCATGCTCATTGTGACATGTTTGTGGGCAATTTTTCTT
AATTGGCTGCTCATGTTCAGTATTATCTTTAAAAATTTGATTACCATTCT
CAGTTAGCGGTTCTCGGGTTTCTTCATCATCCTCCCTCTGGCAAGCCCAA
TTGCTTGGTTTAAAAACTAAACTATTTTGACCTAGATCTTTCAGCTCCAA
ACTTGTATCAAAACTTTCCAAGGTGACTTTAAATAAACCAATAATGTTGC
CATTGGATTTGATATTAAAAGATAACTCAATGGGAGTAATTGATTCTTCA
CATCCAACTTTTACCGGGAATTTAATTGAAACATCTCCAAATTCAAAATT
CATCTTTTAAAGAAATAGATGCAAATACTTTTATCACGATTTTTGACAAT
TTTTGACAATCAACCAATTCCTTTGCAAATGTGGCGATTCTTCTGCCTTT
TTTGTTACGATTTTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043980XLOC_043980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070695-exon-scaffold_57-1575043694:618130..619997TCONS_00070695-exon-scaffold_57-1575043694:618130..619997Clytia hemisphaericaexon
TCONS_00070695-exon-scaffold_57-1510915933:618130..619997TCONS_00070695-exon-scaffold_57-1510915933:618130..619997Clytia hemisphaericaexon
TCONS_00070695-exon-scaffold_57-1491911889:618130..619997TCONS_00070695-exon-scaffold_57-1491911889:618130..619997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:618130..619997 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.93994	4.25417	2.51817	2.60627	3.43183	2.24333	2.38808	3.12996	1.20003	2.23215	1.31731	0.907182	0.741208	0.726988	1.336	1.79834	2.29567	2.40235	0.197454	0.618493	0.99246	1.13878	5.63952	5.30547	3.05791	3.95484	0.938339	0.907538	2.80081	3.40979
Blast
[Close]
BLAST of TCONS_00070695 vs. Swiss-Prot (Human)
Match: ZFP90 (Zinc finger protein 90 homolog OS=Homo sapiens GN=ZFP90 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 3.235e-18
Identity = 38/129 (29.46%), Postives = 60/129 (46.51%), Query Frame = -3 
Query:  625 NGIDENFQKAGDKQRDEKINKNKVKVEIDQQNYQELVEQVEIKGRKFQCDDCGLRFHKRDKLKLHHDTVHKKLRPFECTECGKKFGRKDHLARHIKVHTKEGD---------FSQMSDFIEHNKTIGGD 984
            N   E+F    D    ++I+  +   + +Q   Q+ +     K   +QC+ CG  F KR    + H  +H   +P+EC ECG+ F R+  L +H + HT E           FSQ S  I+H +T  G+
Sbjct:  453 NDCGEDFSHITDFTDHQRIHTAENPYDCEQAFSQQAISHPGEK--PYQCNVCGKAF-KRSTSFIEHHRIHTGEKPYECNECGEAFSRRSSLTQHERTHTGEKPYECIDCGKAFSQSSSLIQHERTHTGE 578

HSP 2 Score: 52.7582 bits (125), Expect = 3.235e-18
Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = -2 
Query: 1031 QTEQVEARERKFECNDCGIQFYKRDKLKMHHDTVHKGLKRFECQECGKKFGRKDHLARHVKVHTKVNTY 1237
            Q E   + E+ F+C +CG  F +   L + H+  H G K FEC  CG+ FG+   L +H+++H +   Y
Sbjct:  355 QHEVTHSGEKPFQCKECGKAFSRCSSL-VQHERTHTGEKPFECSICGRAFGQSPSLYKHMRIHKRGKPY 422
The following BLAST results are available for this feature:
BLAST of TCONS_00070695 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZFP903.235e-1829.46Zinc finger protein 90 homolog OS=Homo sapiens GN=... [more]
back to top