|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070667 ID=TCONS_00070667|Name=TCONS_00070667|organism=Clytia hemisphaerica|type=transcript|length=1101bp
AAAAAGCGCTGTCCTCTCTCAGCCACCGTACTGGTGCAATAAAGTCCTAA
ATTTTCTTGTGtgaattgtcaaaaaaatttatggtGATTTTTTGGAGGAT
TGctgtacagtggagtctccataactcgaacacgcacaggGAACGCAAat
ctgttcgagttatagaaatttcgagttatggagtaaagtttacgaggcat
tgttaactgaagggaccacaCAACTCGTTTgtgttaaggagacattcgag
ttatagagattcgagttattgagactcccctctttttttcctttccCTTT
TTGATGACACATTTCTTCAGACTTTCAGAGTTTTCTTTTTCACCTGTGAA
TATGGTACAATGcttttaactttaatttttgtATACCGTTCAATTGCTTA
AAATCTGTTAATCCGTCCCGTCGCAGTGTTCCACGAACGGAGAGACGGTT
CACACAGTCTGTTCTATTTGCTACCACCGTGGTACCAACATTATTGTCTT
CCGTTTTCCGACTAAAATACGGGTTGTGATGTATTATGAACGCGACTGGT
TTACTCCCGGATGTCGCTCGACTCTGAAGCACAGTTACTTTTTGTTTAGA
ATCAGCATTCAATAAATTGGCGTTCAATTGCTGTAATATCAGTTCTCCAT
TCTGAACACTGCCAACTAGGTTGTTGTCGCTTTGTGAATTTTTGCCTGTT
GGTTGTTGGCTCGTTTGACGTTGCCGTGAATATAGTTTTTCACTGCTTTT
GTAGGACGCGCGATGTCTTGTTCTGGGCTTTACGTCTTTCTTCAAAATCA
TTGGCGACCTACATCGATTGTTTTTGAAGAGATTCTTCGAGTTACTTTGC
TGTGTGTGATGCAGAAGGTTTTCTTTGTCGTTTAACGAAAGACGGCGTCC
GTCATATTTGTCACCACACGGTTGGTTGATCTTTGCTGAAGTACTCTGAA
CGGTTCCCGTAGAGTGACGTCTCACGTCTTGGTTAGGGTGAGGAAAGCAG
AGATGAATACCACTGTTGTACATTTTTCCGTCAGTtgccatcttgatttt
ttttcttttaagtgatttagagatttttttattttcgtactATTAATCTA
A Run BLAST on NCBI transcript from alignment at scaffold_57:310019..311221- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070667 ID=TCONS_00070667|Name=TCONS_00070667|organism=Clytia hemisphaerica|type=transcript|length=1203bp|location=Sequence derived from alignment at scaffold_57:310019..311221- (Clytia hemisphaerica)
AAAAAGCGCTGTCCTCTCTCAGCCACCGTACTGGTGCAATAAAGTCCTAA
ATTTTCTTGTGTGAATTGTCAAAAAAATTTATGGTGATTTTTTGGAGGAT
TGCTGTACAGTGGAGTCTCCATAACTCGAACACGCACAGGGAACGCAAAT
CTGTTCGAGTTATAGAAATTTCGAGTTATGGAGTAAAGTTTACGAGGCAT
TGTTAACTGAAGGGACCACACAACTCGTTTGTGTTAAGGAGACATTCGAG
TTATAGAGATTCGAGTTATTGAGACTCCCCTCTTTTTTTCCTTTCCCTTT
TTGATGACACATTTCTTCAGACTTTCAGAGTTTTCTTTTTCACCTGTGAA
TATGGTACAATGCTTTTAACTTTAATTTTTGTATACCGTTCAATTGCTTA
AAATCTGTTAATCCGTCCCGTCGCAGTGTTCCACGTACGGAGCAGCGGTT
TCGACAGTTTTTAATCGCCGTTGTTTCGTCTCTACTATCTGTAAACGCCG
TGGTACCAACTTTGTCGTCCTCAATCTGTGTTCCAGGAACGGAGAGACGG
TTCACACAGTCTGTTCTATTTGCTACCACCGTGGTACCAACATTATTGTC
TTCCGTTTTCCGACTAAAATACGGGTTGTGATGTATTATGAACGCGACTG
GTTTACTCCCGGATGTCGCTCGACTCTGAAGCACAGTTACTTTTTGTTTA
GAATCAGCATTCAATAAATTGGCGTTCAATTGCTGTAATATCAGTTCTCC
ATTCTGAACACTGCCAACTAGGTTGTTGTCGCTTTGTGAATTTTTGCCTG
TTGGTTGTTGGCTCGTTTGACGTTGCCGTGAATATAGTTTTTCACTGCTT
TTGTAGGACGCGCGATGTCTTGTTCTGGGCTTTACGTCTTTCTTCAAAAT
CATTGGCGACCTACATCGATTGTTTTTGAAGAGATTCTTCGAGTTACTTT
GCTGTGTGTGATGCAGAAGGTTTTCTTTGTCGTTTAACGAAAGACGGCGT
CCGTCATATTTGTCACCACACGGTTGGTTGATCTTTGCTGAAGTACTCTG
AACGGTTCCCGTAGAGTGACGTCTCACGTCTTGGTTAGGGTGAGGAAAGC
AGAGATGAATACCACTGTTGTACATTTTTCCGTCAGTTGCCATCTTGATT
TTTTTTCTTTTAAGTGATTTAGAGATTTTTTTATTTTCGTACTATTAATC
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070667-exon-scaffold_57-1575043694:310788..311221 | TCONS_00070667-exon-scaffold_57-1575043694:310788..311221 | Clytia hemisphaerica | exon |
| TCONS_00070667-exon-scaffold_57-1575043694:310019..310685 | TCONS_00070667-exon-scaffold_57-1575043694:310019..310685 | Clytia hemisphaerica | exon |
| TCONS_00070667-exon-scaffold_57-1510915933:310788..311221 | TCONS_00070667-exon-scaffold_57-1510915933:310788..311221 | Clytia hemisphaerica | exon |
| TCONS_00070667-exon-scaffold_57-1510915933:310019..310685 | TCONS_00070667-exon-scaffold_57-1510915933:310019..310685 | Clytia hemisphaerica | exon |
| TCONS_00070667-exon-scaffold_57-1491911889:310788..311221 | TCONS_00070667-exon-scaffold_57-1491911889:310788..311221 | Clytia hemisphaerica | exon |
| TCONS_00070667-exon-scaffold_57-1491911889:310019..310685 | TCONS_00070667-exon-scaffold_57-1491911889:310019..310685 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:310019..311221 - |
Blast
The following BLAST results are available for this feature:
|
