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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070660 ID=TCONS_00070660|Name=TCONS_00070660|organism=Clytia hemisphaerica|type=transcript|length=982bpRun BLAST on NCBI transcript from alignment at scaffold_57:118248..119229- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070660 ID=TCONS_00070660|Name=TCONS_00070660|organism=Clytia hemisphaerica|type=transcript|length=982bp|location=Sequence derived from alignment at scaffold_57:118248..119229- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070660 vs. Swiss-Prot (Human)
Match: ZNF45 (Zinc finger protein 45 OS=Homo sapiens GN=ZNF45 PE=1 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 3.728e-34 Identity = 65/167 (38.92%), Postives = 98/167 (58.68%), Query Frame = -3
Query: 24 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN**KYSYKFCIVIQNNFLNFSYNLIIH 524
+ ++C CGK + SL++HQR+HT + +QC ECGK F+ +LQ H+ H ++CEECGK F R N H G HT +P+ C VCGK F+ R L H R+H G +P++C+ECGK + +++L++H R H+ Y + C ++S +LIIH
Sbjct: 498 KPYKCERCGKAFSQFSSLQVHQRVHTGEKP-YQCAECGKGFSVGSQLQAHQRCHTGE-KPYQCEECGKGFCRASNFLAHRGVHTGEKPYRCDVCGKRFRQRSYLQAHQRVHTGERPYKCEECGKVFSWSSYLQAHQRVHTGEKPYKCEEC----GKGFSWSSSLIIH 658 HSP 2 Score: 114.39 bits (285), Expect = 8.748e-28 Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = -3
Query: 102 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN 524
+ ++C CGK + L IH RIHT + ++C+ECGK F+ LQ H+I H ++CEECGK F R NL H HT +P+ C CGK F + H R+H G KP++C+ECGK + A++L +H R H+
Sbjct: 330 KPYKCNACGKSFSYSSHLNIHCRIHTGEKP-YKCEECGKGFSVGSHLQAHQISHTGE-KPYKCEECGKGFCRASNLLDHQRGHTGEKPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTG 468 HSP 3 Score: 107.842 bits (268), Expect = 1.398e-25 Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = -3
Query: 102 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN 524
+ ++C CGK + IH R+HT + ++C+ECGK F+Q L H+ H ++C CGK F+R +L H HT +P+ C CGKAF +L H R+H G KP++C ECGK + + L++H R H+
Sbjct: 414 KPYQCDACGKGFSRSSDFNIHFRVHTGEKP-YKCEECGKGFSQASNLLAHQRGHTGE-KPYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQCAECGKGFSVGSQLQAHQRCHTG 552 HSP 4 Score: 106.301 bits (264), Expect = 4.995e-25 Identity = 54/141 (38.30%), Postives = 80/141 (56.74%), Query Frame = -3
Query: 102 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN 524
+ ++C ECGK + +L HQR HT + +QC CGK F++ + +H VH ++CEECGK F++ NL H HT +P+ C CGK F +L H RIH G KP++C+ CGK++ + L+ H R H+
Sbjct: 386 KPYKCEECGKGFCRASNLLDHQRGHTGEKP-YQCDACGKGFSRSSDFNIHFRVHTGE-KPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTG 524 HSP 5 Score: 102.449 bits (254), Expect = 9.475e-24 Identity = 55/174 (31.61%), Postives = 86/174 (49.43%), Query Frame = -3
Query: 3 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN**KYSYKFCIVIQNNFLNFSYNLIIHFHSIIFQ 524
+ ++C ECGK + L+ HQ HT + ++C+ECGK F + L H+ H ++C+ CGK F+R + H HT +P+ C CGK F NL+ H R H G KP++C CGK + ++ L H R H+ Y + C + F + + +H +Q
Sbjct: 358 KPYKCEECGKGFSVGSHLQAHQISHTGEKP-YKCEECGKGFCRASNLLDHQRGHTGE-KPYQCDACGKGFSRSSDFNIHFRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCGTCGKGFSRSSDLNVHCRIHTGEKPYKCERCGKAFSQFSSLQVHQRVHTGEKPYQ 529 HSP 6 Score: 101.293 bits (251), Expect = 1.888e-23 Identity = 48/118 (40.68%), Postives = 74/118 (62.71%), Query Frame = -3
Query: 102 IHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN 455
+HT + ++C+ECG F+Q LQ+H VH ++CEECGKSF+ + L+ H HT +P+ C CGK+F + +L H RIH G KP++C+ECGK + +HL++H +H+
Sbjct: 269 VHTGEKP-YKCEECGVGFSQRSYLQVHLKVHTGK-KPYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNACGKSFSYSSHLNIHCRIHTGEKPYKCEECGKGFSVGSHLQAHQISHTG 384 HSP 7 Score: 85.8853 bits (211), Expect = 1.997e-18 Identity = 50/167 (29.94%), Postives = 88/167 (52.69%), Query Frame = -3
Query: 24 RSFECTECGKCYKARWSLKIHQRIHTIQSDNFQCKECGKSFAQLDELQLHEIVHKDTTNKFECEECGKSFTRKGNLKQHLGTHTDHRPFYCTVCGKAFKHRCNLVEHSRIHIGFKPFRCKECGKSYRTATHLKSHSRTHSN**KYSYKFCIVIQNNFLNFSYNLIIH 524
+ ++C +C ++ SL+ HQR+H+ ++ ++ +SF+Q L H+ V N ++ EECG++ + + + L HT +P+ C CG F R L H ++H G KP++C+ECGKS+ + L++H R H+ Y C ++S +L IH
Sbjct: 190 KPYKCEKCDNAFRRFSSLQAHQRVHS-RAKSYTNDASYRSFSQRSHLPHHQRV-PTGENPYKYEECGRNVGKSSHCQAPLIVHTGEKPYKCEECGVGFSQRSYLQVHLKVHTGKKPYKCEECGKSFSWRSRLQAHERIHTGEKPYKCNAC----GKSFSYSSHLNIH 350 The following BLAST results are available for this feature:
BLAST of TCONS_00070660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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