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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070657 ID=TCONS_00070657|Name=TCONS_00070657|organism=Clytia hemisphaerica|type=transcript|length=3010bpRun BLAST on NCBI transcript from alignment at scaffold_57:67840..70908- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070657 ID=TCONS_00070657|Name=TCONS_00070657|organism=Clytia hemisphaerica|type=transcript|length=3069bp|location=Sequence derived from alignment at scaffold_57:67840..70908- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070657 vs. Swiss-Prot (Human)
Match: ZN595 (Zinc finger protein 595 OS=Homo sapiens GN=ZNF595 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 9.428e-46 Identity = 93/207 (44.93%), Postives = 125/207 (60.39%), Query Frame = -2
Query: 1819 CTQCSRLFSSDSRLILHIKAVHEKSNNPSEKVKREPKEYKCQECGKTFTGSRRLKDHRNSVHLNLKPFECQECGKCFARRDNFAKHQRIHTANKAHKCEECGKTFSQKSVMQGHIDRDHKGLQPFKCQECGKCYSQRYDLTRHENIVHKGLKPYKCQECGKTFSRKPDLKNHEDVVHKGVKPFKCKTCGDAFSSRGDLFSHKNIHKE 2439
C +C + F+ S LI+H +++H E K YKC+ECGK FT S L H+ +H KP+ C+ECGK F R + AKH+RIHT K + CEECGK F+Q S + H R H G +P+KC+ECGK +++ L H+ I H G KPYKC+ECGK F L H++ +H G KP+KCK CG AF+ L H++IH E
Sbjct: 342 CEKCGKAFNQSSSLIIH-RSIHS-----------EQKLYKCEECGKAFTWSSSLNKHKR-IHTGEKPYACEECGKAFYRSSHLAKHKRIHTGEKPYTCEECGKAFNQSSTLILH-KRIHSGQKPYKCEECGKAFTRSTTLNEHKKI-HTGEKPYKCEECGKAFIWSASLNEHKN-IHTGEKPYKCKECGKAFNQSSGLIIHRSIHSE 532 HSP 2 Score: 156.377 bits (394), Expect = 1.815e-39 Identity = 87/222 (39.19%), Postives = 124/222 (55.86%), Query Frame = -2
Query: 1825 CTQCSRLFSSDSRLILHIKAVHEKSN-----------------NPSEKVKREPKEYKCQECGKTFTGSRRLKDHRNSVHLNLKPFECQECGKCFARRDNFAKHQRIHTANKAHKCEECGKTFSQKSVMQGHIDRDHKGLQPFKCQECGKCYSQRYDLTRHENIVHKGLKPYKCQECGKTFSRKPDLKNHEDVVHKGVKPFKCKTCGDAFSSRGDLFSHKNIH 2439
C +C + F+ S LILH K +H N +K+ K YKC+ECGK F S L +H+N +H KP++C+ECGK F + H+ IH+ K +KCEECGK F++ + + H + H G +P+KC+ECGK Y+ LT+H+ I H G KP+ C+ECGK F+ L H+ ++H G K +KC+ CG AF+ L HK IH
Sbjct: 426 CEECGKAFNQSSTLILH-KRIHSGQKPYKCEECGKAFTRSTTLNEHKKIHTGEKPYKCEECGKAFIWSASLNEHKN-IHTGEKPYKCKECGKAFNQSSGLIIHRSIHSEQKLYKCEECGKAFTRSTALNEH-KKIHSGEKPYKCKECGKAYNLSSTLTKHKRI-HTGEKPFTCEECGKAFNWSSSLTKHK-IIHTGEKSYKCEECGKAFNRPSTLTVHKRIH 642 HSP 3 Score: 152.525 bits (384), Expect = 3.141e-38 Identity = 85/212 (40.09%), Postives = 119/212 (56.13%), Query Frame = -2
Query: 1819 DKCIPCTQCSRLFSSDSRLILHIKAVHEKSNNPSEKVKREPKEYKCQECGKTFTGSRRLKDHRNSVHLNLKPFECQECGKCFARRDNFAKHQRIHTANKAHKCEECGKTFSQKSVMQGHIDRDHKGLQPFKCQECGKCYSQRYDLTRHENIVHKGLKPYKCQECGKTFSRKPDLKNHEDVVHKGVKPFKCKTCGDAFSSRGDLFSHKNIHKE 2454
+K CT+C R F S L H +H K YKC++CGK F S L H+ +H KP+ C+ECGK F R +H++IHT K +KCEECGK F++ + + H + H G +P+KC+ECGK + + H+NI H G KPYKC+ECGK F + L H+++ H G KP+ C+ CG AF+ L H++IH E
Sbjct: 170 EKPFKCTECGRSFYM-SHLTQHT-GIHAGE-----------KPYKCEKCGKAFNRSTSLSKHKR-IHTGEKPYTCEECGKAFRRSTVLNEHKKIHTGEKPYKCEECGKAFTRSTTLNEH-KKIHTGEKPYKCKECGKAFRWSTSMNEHKNI-HTGEKPYKCKECGKAFRQSRSLNEHKNI-HTGEKPYTCEKCGKAFNQSSSLIIHRSIHSE 364 HSP 4 Score: 151.369 bits (381), Expect = 8.638e-38 Identity = 86/210 (40.95%), Postives = 126/210 (60.00%), Query Frame = -2
Query: 1825 KCIPCTQCSRLFSSDSRLILHIKAVHEKSNNPSEKVKRE-PKEYKCQECGKTFTGSRRLKDHRNSVHLNLKPFECQECGKCFARRDNFAKHQRIHTANKAHKCEECGKTFSQKSVMQGHIDRDHKGLQPFKCQECGKCYSQRYDLTRHENIVHKGLKPYKCQECGKTFSRKPDLKNHEDVVHKGVKPFKCKTCGDAFSSRGDLFSHKNIH 2451
+C+ TQ S++F ++ +K + SN+ K++ K +KC ECG++F S L H +H KP++C++CGK F R + +KH+RIHT K + CEECGK F + +V+ H + H G +P+KC+ECGK +++ L H+ I H G KPYKC+ECGK F + H++ +H G KP+KCK CG AF L HKNIH
Sbjct: 135 QCLSTTQ-SKIFQCNTC----VKVFSKFSNSNKHKIRHTGEKPFKCTECGRSFYMSH-LTQH-TGIHAGEKPYKCEKCGKAFNRSTSLSKHKRIHTGEKPYTCEECGKAFRRSTVLNEH-KKIHTGEKPYKCEECGKAFTRSTTLNEHKKI-HTGEKPYKCKECGKAFRWSTSMNEHKN-IHTGEKPYKCKECGKAFRQSRSLNEHKNIH 334 HSP 5 Score: 144.05 bits (362), Expect = 1.908e-35 Identity = 79/205 (38.54%), Postives = 114/205 (55.61%), Query Frame = -2
Query: 1825 CTQCSRLFSSDSRLILHIKAVHEKSNNPSEKVKREPKEYKCQECGKTFTGSRRLKDHRNSVHLNLKPFECQECGKCFARRDNFAKHQRIHTANKAHKCEECGKTFSQKSVMQGHIDRDHKGLQPFKCQECGKCYSQRYDLTRHENIVHKGLKPYKCQECGKTFSRKPDLKNHEDVVHKGVKPFKCKTCGDAFSSRGDLFSHKNIH 2439
C +C + F+ + L N +K+ K YKC+ECGK F S + +H+N +H KP++C+ECGK F + + +H+ IHT K + CE+CGK F+Q S + H H + +KC+ECGK ++ L +H+ I H G KPY C+ECGK F R L H+ +H G KP+ C+ CG AF+ L HK IH
Sbjct: 258 CEECGKAFTRSTTL------------NEHKKIHTGEKPYKCKECGKAFRWSTSMNEHKN-IHTGEKPYKCKECGKAFRQSRSLNEHKNIHTGEKPYTCEKCGKAFNQSSSLIIH-RSIHSEQKLYKCEECGKAFTWSSSLNKHKRI-HTGEKPYACEECGKAFYRSSHLAKHKR-IHTGEKPYTCEECGKAFNQSSTLILHKRIH 446 HSP 6 Score: 84.7297 bits (208), Expect = 1.205e-16 Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = -2
Query: 2077 CTQCSRLFSSDSRLILHIKAVHEKSN-----------------NPSEKVKREPKEYKCQECGKTFTGSRRLKDHRNSVHLNLKPFECQECGKCFARRDNFAKHQRIHTANKAHKCEECGKTFSQKSVMQGHIDRDHKG 2439
C +C + F+ S LI+H +++H + N +K+ K YKC+ECGK + S L H+ +H KPF C+ECGK F + KH+ IHT K++KCEECGK F++ S + H R H G
Sbjct: 510 CKECGKAFNQSSGLIIH-RSIHSEQKLYKCEECGKAFTRSTALNEHKKIHSGEKPYKCKECGKAYNLSSTLTKHKR-IHTGEKPFTCEECGKAFNWSSSLTKHKIIHTGEKSYKCEECGKAFNRPSTLTVH-KRIHTG 644 The following BLAST results are available for this feature:
BLAST of TCONS_00070657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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