TCONS_00070656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070656
Unique NameTCONS_00070656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070656 ID=TCONS_00070656|Name=TCONS_00070656|organism=Clytia hemisphaerica|type=transcript|length=2107bp
GGTGTTtcttttaaacatcaattgaaATATATTATCAGGCTCGAATACAA
TAAAAAATACTATAAACATCGCAAAGTTTTTTAAGTatcattttaaaatt
tgtaGAAAACAAAAACTCTAAAACACTGATCTTGTAAAACACATAATTTA
TTGAAGGAGTCCATCATTACAGccccgtgtcacagacctggTGGGACCTT
TACTCACTCGGAAGAATAGGCCACTTTTTGAATTCTCACTGATTTAAAAT
ATGAGATTTTCAATCCCAATTGGCATTCAGTCTCTTCATTTTATCCCCAC
CGGCTAAAAAGTTCACACtaggtcactgagacaggggtgtattatcaTCA
CAATTATCATCACAGAGGCAGTTAAAATTCATGGTCGTTTGATCAAACGT
AAATCATATCCAGAACATTTTCTTGCAAACCGTATTCCACAAACCTGGCA
TTCATTTCATGGAGGGAATTCATCATCGTCAAGTGGGGTAATGGGAATCC
CTTTATGAGTGATCAAATGTATATCAAGAACATTTTTTCTTGCAAAACAA
ACACCACATACCATACATTGAAAAGGTTTATTCTCTTGCGTAGATAAGTG
CTTGGACGGATCAATTTCACTTGGAAAACTTTTCCCACATTCTTGATATT
TAAACGGACTCGTCTTGTGAGTCAATATGTGCAACGAAAGACTGTGTCCA
TTTGTAAAATATGTTCCACAAACATGGCATTTAAACCTTTTCATTTCATG
AGTCAATAAATGGTCTGAAAGATCACTTTCCTCGGCAAAGATTTCACCAC
ATACCTGACATTTCTTGGGTTTGTGAATCAATATATGCTCTGAAAgctca
ttttcttttttaaagctcTTTCCACATTCTTCACATTTAAAATTCTCCTC
TGAACCTTTATCACTTAAAAGAGACCCAGGTGCATTAGTAATTGCTTTTA
CATATTTTATAAAGTCTGGCTCCCTGGATATCGTTTGTTCTTCTTCTCTA
TGTTGACTTAGAGAATCGATTTCAATACTTTGTGTGTTAAGGGGTTCGTT
TTCTGCAAAACTTTCTCCAAAAACCTCACTATACAATGCCTTATGCTCGT
ATGTTATCCTTTTACGAATAGTATCTTGGGCAAttcttttgcttgaaaac
gatttTTCAAATACTTCACAAGAACTATAATCAGTGTGCCTTTTGAGGTC
GTTATTCCGTGGAAGAATACTTACAGCACTTTCTTCATATTGAGGTGGTA
GAGGGTTGCAAAAAGCATTATCAGTTTGCAAATAAACATTTTGTTTGAGA
GCCAATAAATTATCCCGATCAATGCTGTCGTTCGATTTGTTAGGAGCGTG
CGAAGCAGCATGTGAAATGTGAGTTTCTTGCCGTGAAAATGATTTACCAC
TTTCTTGACATTGAGATTGTTCGATACTTATGAGATTGGTATCATTCTGA
GGTtcaatatttctttgaaaagcTTTTCCACAATCATCACATTGATGCTT
TTCggtttcattttctttcataAAGATCTCATTTTTTGGTTTgaacaaaa
aatcattttttaaatcatcTCCTAATTGGACACGGCTCAGTATATCATCC
ATGGAAACAAAACAAGTGCCAATAATTTGACTTTCTTTACGAATATCAAA
GGAGAATTGCATCGAAATGCTTGATCCACCATTATGCTCGGTCACTGTTT
TCATAAAGACATTGTTAATTGAATAactcattttcttttatttttcaaag
ctaTCTAAACCCATATAAAATGAATTACAAGGAGCTTTAAATTGAAGTTA
ACGAAATGTATAAAATTTGAGAGTTTCGATTAGAGTTTGGAGAATAATCG
TCTACAGGGATATTAGATTTAAAGCAAGATCACTAACTCGTAAAACAAAA
AGAACCCTCGTACACTTCATTATCAAAATTAACCATGAAAATGATTTACC
ACACACTTGACATTAACATATTCCATGGTGAGCTGAGATGGATTGTAATA
TCTAATACAGTCGAATCGTTAACCATTCTTTGTTTATAAACATGTTTCAA
TTTCGAAttccaaaattcttttttcatttttttctttattcttttttagc
atctcta
Run BLAST on NCBI

transcript from alignment at scaffold_57:65361..67542-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070656 ID=TCONS_00070656|Name=TCONS_00070656|organism=Clytia hemisphaerica|type=transcript|length=2182bp|location=Sequence derived from alignment at scaffold_57:65361..67542- (Clytia hemisphaerica)
GGTGTTTCTTTTAAACATCAATTGAAATATATTATCAGGCTCGAATACAA
TAAAAAATACTATAAACATCGCAAAGTTTTTTAAGTATCATTTTAAAATT
TGTAGAAAACAAAAACTCTAAAACACTGATCTTGTAAAACACATAATTTA
TTGAAGGAGTCCATCATTACAGCCCCGTGTCACAGACCTGGTGGGACCTT
TACTCACTCGGAAGAATAGGCCACTTTTTGAATTCTCACTGATTTAAAAT
ATGAGATTTTCAATCCCAATTGGCATTCAGTCTCTTCATTTTATCCCCAC
CGGCTAAAAAGTTCACACTAGGTCACTGAGACAGGGGTGTATTATCATCA
CAATTATCATCACAGAGGCAGTTAAAATTCATGGTCGTTTGATCAAACGT
AAATCATATCCAGAACATTTTCTTGCAAACCGTATTCCACAAACCTGGCA
TTCATTTCATGGAGGGAATTCATCATCGTCAAGTGGGGTAATGGGAATCC
CTTTATGAGTGATCAAATGTATATCAAGAACATTTTTTCTTGCAAAACAA
ACACCACATACCATACATTGAAAAGGTTTATTCTCTTGCGTAGATAAGTG
CTTGGACGGATCAATTTCACTTGGAAAACTTTTCCCACATTCTTGATATT
TAAACGGACTCGTCTTGTGAGTCAATATGTGCAACGAAAGACTGTGTCCA
TTTGTAAAATATGTTCCACAAACATGGCATTTAAACCTTTTCATTTCATG
AGTCAATAAATGGTCTGAAAGATCACTTTCCTCGGCAAAGATTTCACCAC
ATACCTGACATTTCTTGGGTTTGTGAATCAATATATGCTCTGAAAGCTCA
TTTTCTTTTTTAAAGCTCTTTCCACATTCTTCACATTTAAAATTCTCCTC
TGAACCTTTATCACTTAAAAGAGACCCAGGTGCATTAGTAATTGCTTTTA
CATATTTTATAAAGTCTGGCTCCCTGGATATCGTTTGTTCTTCTTCTCTA
TGTTGACTTAGAGAATCGATTTCAATACTTTGTGTGTTAAGGGGTTCGTT
TTCTGCAAAACTTTCTCCAAAAACCTCACTATACAATGCCTTATGCTCGT
ATGTTATCCTTTTACGAATAGTATCTTGGGCAATTCTTTTGCTTGAAAAC
GATTTTTCAAATACTTCACAAGAACTATAATCAGTGTGCCTTTTGAGGTC
GTTATTCCGTGGAAGAATACTTACAGCACTTTCTTCATATTGAGGTGGTA
GAGGGTTGCAAAAAGCATTATCAGTTTGCAAATAAACATTTTGTTTGAGA
GCCAATAAATTATCCCGATCAATGCTGTCGTTCGATTTGTTAGGAGCGTG
CGAAGCAGCATGTGAAATGTGAGTTTCTTGCCGTGAAAATGATTTACCAC
TTTCTTGACATTGAGATTGTTCGATACTTATGAGATTGGTATCATTCTGA
GGTTCAATATTTCTTTGAAAAGCTTTTCCACAATCATCACATTGATGCTT
TTCGGTTTCATTTTCTTTCATAAAGATCTCATTTTTTGGTTTGAACAAAA
AATCATTTTTTAAATCATCTCCTAATTGGACACGGCTCAGTATATCATCC
ATGGAAACAAAACAAGTGCCAATAATTTGACTTTCTTTACGAATATCAAA
GGAGAATTGCATCGAAATGCTTGATCCACCATTATGCTCGGTCACTGTTT
TCATAAAGACATTGTTAATTGAATAACTCATTTTCTTTTATTTTTCAAAG
CTATCTAAACCCATATAAAATGAATTACAAGGAGCTTTAAATTGAAGTTA
ACGAAATGTATAAAATTTGAGAGTTTCGATTAGAGTTTGGAGAATAATCG
TCTACAGGGATATTAGATTTAAAGCAAGATCACTAACTCGTAAAACAAAA
AGAACCCTCGTACACTTCATTATCAAAATTAACCATGAAAATGATTTACC
ACACACTTGACATTAACATATTCCATGGTGAGCTGAGATGGATTGTAATA
TCTAATACAGTGGAATCGTTAACCATTCTTTGNGACATTAACATATTCCA
TGGTGAGCTGAGATGGATTGTAATATCTAATACAGTCGAATCGTTAACCA
TTCTTTGTTTATAAACATGTTTCAATTTCGAATTCCAAAATTCTTTTTTC
ATTTTTTTCTTTATTCTTTTTTAGCATCTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043959XLOC_043959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070656-exon-scaffold_57-1575043694:65576..67542TCONS_00070656-exon-scaffold_57-1575043694:65576..67542Clytia hemisphaericaexon
TCONS_00070656-exon-scaffold_57-1575043694:65361..65500TCONS_00070656-exon-scaffold_57-1575043694:65361..65500Clytia hemisphaericaexon
TCONS_00070656-exon-scaffold_57-1510915933:65576..67542TCONS_00070656-exon-scaffold_57-1510915933:65576..67542Clytia hemisphaericaexon
TCONS_00070656-exon-scaffold_57-1510915933:65361..65500TCONS_00070656-exon-scaffold_57-1510915933:65361..65500Clytia hemisphaericaexon
TCONS_00070656-exon-scaffold_57-1491911889:65576..67542TCONS_00070656-exon-scaffold_57-1491911889:65576..67542Clytia hemisphaericaexon
TCONS_00070656-exon-scaffold_57-1491911889:65361..65500TCONS_00070656-exon-scaffold_57-1491911889:65361..65500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:65361..67542 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.59815	0.674429	0.380956	0.310588	1.81494	1.5537	1.53803	1.55238	0.252025	0.7219	0.719632	0.535302	0.671305	0.710067	0.530702	0.865677	0.855961	1.02116	0.298053	0.644574	0.740979	0.317347	0.62153	1.09115	3.13076	3.15235	0.589506	0.65649	0.414937	0.38048
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00070656 vs. Swiss-Prot (Human)
Match: ZN226 (Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.746e-25
Identity = 113/422 (26.78%), Postives = 177/422 (41.94%), Query Frame = -2 
Query:  421 SFDIRKESQIIGTCFVSMDDILSRVQLGDDLKNDFLFKPKNEIFMKENETEKHQCDDCGKAFQRNIEPQNDTNLISIEQS-QCQESGKSFSRQETHISHAASHAPNKSNDSIDRDNLLALKQNVYLQTDNAFCNPLPPQYEESAVSILPRNNDLKRHTDYSSCEVFEKSFSSKRIAQDTIRKRITYEHKALYSEVFGESFAENEPLNTQSIEIDSLSQHREEEQTISREPDFIKYV--KAITNAPGSLLSDK--GSEENFKCEECGKSFKKENELSEHILIH---KPKKCQVCGEIFAEESDLSDHLLTHEMKR-FKCHVCGTYFTNGHSLSLHILTHKT-SPFKYQECGKSFPSEIDPSKHLSTQEN-KPFQCMVCGVCFARKNVLDIHLITHKGIPITPLDDDEFPP*NECQVCGIRFAR 1653
            SFD+ ++ Q       S +  L+ V+ G      F + P   +  K +  EK +CD+CGK F +    Q    +  IE+  +C++ GK FSR+     H   H   K  +    +   A  Q  +LQ          P   ++      RN+ L+ H    +    EK +  +   +  I     Y H+ +++   GE   + E          SL  H   +   + E  +I  V  K  T +       +    E+ +KC ECGKSF++ +    H+++H   KP KC++CG+ F++ S L  H   H +++ FKC  CG  F     L +H L H    P+K +ECGK F    D   H       KP+ C  CG  F + + L  H   H G       +  F    +C+ CG  F R
Sbjct:  266 SFDLHQQLQ-------SGEKSLTCVERG----KGFCYSPVLPVHQKVHVGEKLKCDECGKEFSQGAHLQTHQKVHVIEKPYKCKQCGKGFSRRSALNVHCKVHTAEKPYNC--EECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHT---GEKPYKCEECGKGFICSSNLYIHQRVHT---GEKPYKCEECGKGFSRPSSLQAH---QGVHTGEKSYICTVCGKGFTLSSNLQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSG-------EKPF----KCEECGKSFGR 654

HSP 2 Score: 94.7449 bits (234), Expect = 4.972e-20
Identity = 104/402 (25.87%), Postives = 151/402 (37.56%), Query Frame = -2 
Query:  418 QCDDCGKAFQRNIEPQNDTNLISIEQS-----------------------------QCQESGKSFSRQETHISHAASHAPNKSNDSIDRDNLLALKQNVYLQTDNAFCNPLPPQYEESAVSILPRNNDLKRHTDYSS------CEVFEKSFSSKRIAQDTIRKRITYEHKALYSEVFGESFAENEPLNTQSIEIDSLSQHREEE--QTISREPDFIKYVKAITNAPGSLLSDKGSEENFKCEECGKSFKKENELSEHILIH---KPKKCQVCGEIFAEESDLSDHLLTHEM-KRFKCHVCGTYFTNGHSLSLHILTHKT-SPFKYQECGKSFPSEIDPSKHLSTQEN-KPFQCMVCGVCFARKNVLDIHLITHKGIPITPLDDDEFPP*NECQVCGIRFARK 1494
            +CD CGK+F RN   Q+   + + E+                              +C+E GK FSR  +  +H   H   KS           L  N  LQ          P           RN+  + H    +      CE+  K FS     Q  I ++     K    E  G+ F ++  L    +       ++ EE  +  SR  D   + +  T            E+ + CEECGK F++ + L  H  +H   KP KC+ CG+ F   + L  H   H   K +KC  CG  F    +L +H   H    P+K  ECGK F        H S     KP++C VCG  F+R + L  H   H G         E P   +C++CG  F+ +
Sbjct:  392 KCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIHQRVHTGEKPYKCEECGKGFSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSN--LQAHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQ--IHQKAHSIEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTG-----------EKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKYFSQASSLQLHQSVHTGEKPYKCDVCGKVFSRSSQLQSHQRVHTG---------EKP--YKCEICGKSFSWR 767

HSP 3 Score: 93.2041 bits (230), Expect = 1.615e-19
Identity = 95/348 (27.30%), Postives = 139/348 (39.94%), Query Frame = -2 
Query:  499 HQCDDCGKAFQRNIEPQNDTNLISIEQS-QCQESGKSFSRQETHISHAASHAPNKSNDSIDRDNLLALKQNVYLQTDNAFCNPLPPQYEESAVSILPRNNDLKRHTDYSS------CEVFEKSFSSKRIAQDTIRKRITYEHKALYSEVFGESFAENEPLNTQSIEIDSLSQHREE--EQTISREPDFIKYVKAITNAPGSLLSDKGSEENFKCEECGKSFKKENELSEHILIH---KPKKCQVCGEIFAEESDLSDHLLTHEMKR-FKCHVCGTYFTNGHSLSLHILTHKT-SPFKYQECGKSFPSEIDPSKHLSTQE-NKPFQCMVCGVCFARKNVLDIHLITHKG 1497
            + C++CG+AF +    Q+   L + E+  +C   GKSFSR     SH   H   K     +         N+Y+          P + EE       R + L+ H    +      C V  K F+     Q    +R+    K       G+SF  N       +       ++ E   +  S+      + KA +            E+ FKCEECG+ F + + L  H LIH   KP KC+ CG+ F+  +DL  H   H  ++ + C  CG  F    +L  H   H    PFK +ECGKSF        H      +KP++C  CG  F     LD+H   H G
Sbjct:  363 YNCEECGRAFSQASHLQDHQRLHTGEKPFKCDACGKSFSRNSHLQSHQRVHTGEKPYKCEECGKGFICSSNLYIH-QRVHTGEKPYKCEECGKG-FSRPSSLQAHQGVHTGEKSYICTVCGKGFTLSSNLQ--AHQRVHTGEKPYKCNECGKSFRRNSHYQVHLVVHTGEKPYKCEICGKGFSQSSYLQIHQKAHS-----------IEKPFKCEECGQGFNQSSRLQIHQLIHTGEKPYKCEECGKGFSRRADLKIHCRIHTGEKPYNCEECGKVFRQASNLLAHQRVHSGEKPFKCEECGKSFGRSAHLQAHQKVHTGDKPYKCDECGKGFKWSLNLDMHQRVHTG 695
The following BLAST results are available for this feature:
BLAST of TCONS_00070656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN2261.746e-2526.78Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 ... [more]
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