TCONS_00070653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070653
Unique NameTCONS_00070653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070653 ID=TCONS_00070653|Name=TCONS_00070653|organism=Clytia hemisphaerica|type=transcript|length=520bp
TCCTTTTAATGGATCTATTCCTTTATGTTGTCTCTGTACATGTAATCTTA
GATCATTTTTCTATGAATAATTCTTACCACATTCTAGACATTTAAAACGA
CTTCCCACACTCGGTGCATACACGTGGTTTGTTTCAAGTGTCAgtaaatt
tgtgtttttcaagGTCCGCCTTTCGTGCAAAACATTTACCACGTTCTTCA
CATTGGAATGGTTTTATACCCAATTAGACTGCATCATTTTGCCTTTTTAA
TATACCATTAGTGGAAAACGTTTTACCACATACATCACAATCAATCCTTC
CTGTGTGTGTTTTGTCTTCGAGTTTTGGTTGACTTGAAAGTCTTGAACAC
AAAATCATTCTGTTCTGTATAAATGTAAGTTTGACGCCATGAAGTCAATT
TCCAATAGAAAGCTGACATGTACCCATTTTAATGCTATCTTTTGTAATCT
CAAATAACATAGtcaaagaaagtaaaaaaacgACAAAGCCAAAGGAAATG
GTGCATCTTTATCCTTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_57:60184..60703-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070653 ID=TCONS_00070653|Name=TCONS_00070653|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at scaffold_57:60184..60703- (Clytia hemisphaerica)
TCCTTTTAATGGATCTATTCCTTTATGTTGTCTCTGTACATGTAATCTTA
GATCATTTTTCTATGAATAATTCTTACCACATTCTAGACATTTAAAACGA
CTTCCCACACTCGGTGCATACACGTGGTTTGTTTCAAGTGTCAGTAAATT
TGTGTTTTTCAAGGTCCGCCTTTCGTGCAAAACATTTACCACGTTCTTCA
CATTGGAATGGTTTTATACCCAATTAGACTGCATCATTTTGCCTTTTTAA
TATACCATTAGTGGAAAACGTTTTACCACATACATCACAATCAATCCTTC
CTGTGTGTGTTTTGTCTTCGAGTTTTGGTTGACTTGAAAGTCTTGAACAC
AAAATCATTCTGTTCTGTATAAATGTAAGTTTGACGCCATGAAGTCAATT
TCCAATAGAAAGCTGACATGTACCCATTTTAATGCTATCTTTTGTAATCT
CAAATAACATAGTCAAAGAAAGTAAAAAAACGACAAAGCCAAAGGAAATG
GTGCATCTTTATCCTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043957XLOC_043957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070653-exon-scaffold_57-1575043694:60184..60703TCONS_00070653-exon-scaffold_57-1575043694:60184..60703Clytia hemisphaericaexon
TCONS_00070653-exon-scaffold_57-1510915933:60184..60703TCONS_00070653-exon-scaffold_57-1510915933:60184..60703Clytia hemisphaericaexon
TCONS_00070653-exon-scaffold_57-1491911889:60184..60703TCONS_00070653-exon-scaffold_57-1491911889:60184..60703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:60184..60703 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.95866	4.38336	2.58326	2.5102	3.2306	2.4313	2.34661	2.74609	1.73034	0.833507	1.3869	1.67143	1.4415	1.81218	1.94329	3.47575	2.74037	3.68654	0.84886	1.39585	1.77042	2.13898	2.68279	3.44851	0	0	2.65916	1.00162	0.759695	1.29002
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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