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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070652 ID=TCONS_00070652|Name=TCONS_00070652|organism=Clytia hemisphaerica|type=transcript|length=547bp
CTATTCCTTTATGTTGTCTCTGTACATGTAATCTTAGATCATTTTTCTAT
GAATAATTCTTACCACATTCTAGACATTTAAAACGACTTCCCACACTCGG
TGCATACATGTGGCTTATTTCCCGAATGAGACCGTTGATGTTGTTTGAGA
CCATACTTTCGCCCAAAACATTTGCCACACTCGTCGCATTGAAAAGGCTT
CAGACCTTTATGGACTGTATCTACATGCACAGCAAGTCTATaatgatttc
caaaaattttaccacactcctcgcactttttgttttttggtaTACGACCA
ATaggtttaaaaacaaacttattCTTTTGTTCTTCATCTTCAAGTTCAAC
TAGTCTTGGTAAATTATCCATATCAATTTCACACGTTCCAACTCGTTTGC
CTTCTTTAGTAAGCTCAaatgatattttgattggaGTCTTTGAATCTGAA
TCTTCACTCACTGTATTTATCCCGATATTCTCAATTCTATAATTCatctt
gactttttgaattcttATCTTTATcctagaaaaaaatgaaatgggAA Run BLAST on NCBI transcript from alignment at scaffold_57:57900..60689- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070652 ID=TCONS_00070652|Name=TCONS_00070652|organism=Clytia hemisphaerica|type=transcript|length=2790bp|location=Sequence derived from alignment at scaffold_57:57900..60689- (Clytia hemisphaerica)
CTATTCCTTTATGTTGTCTCTGTACATGTAATCTTAGATCATTTTTCTAT
GAATAATTCTTACCACATTCTAGACATTTAAAACGACTTCCCACACTCGG
TGCATACACGTGGTTTGTTTCAAGTGTCAGTAAATTTGTGTTTTTCAAGG
TCCGCCTTTCGTGCAAAACATTTACCACGTTCTTCACATTGGAATGGTTT
TATACCCAATTAGACTGCATCATTTTGCCTTTTTAATATACCATTAGTGG
AAAACGTTTTACCACATACATCACAATCAATCCTTCCTGTGTGTGTTTTG
TCTTCGAGTTTTGGTTGACTTGAAAGTCTTGAACACAAAATCATTCTGTT
CTGTATAAATGTAAGTTTGACGCCATGAAGTCAATTTCCAATAGAAAGCT
GACATGTACCCATTTTAATGCTATCTTTTGTAATCTCAAATAACATAGTC
AAAGAAAGTAAAAAAACGACAAAGCCAAAGGAAATGGTGCATCTTTATCC
TTTAAAGTCACCAAGAAGCCAGCAGCCAGGAGTGAGCTATATTATCAACT
GGTAAAATTAATTCCAGTTGTGAATCTAGTCGTGAAATGACCTCAACAGT
GATTATTAGATTTTCAAGTTGAAAATCCATTTTTATTTTTATTTTTAGAA
TAACTTTTCTTTACCTCTGAAAATAAATAGAACAAAATTTTAAAAAGGGA
TGATAATTTCTAATAAGGATATATTCAGTAAAGACTTTAAAAAGTGAGTG
AAGATACCCCGCAAATACATTTCATTGAGTTTCAAAAGAGGGAGTAGGAT
AAAATACCGAGTTTATGTATGTCTATGTGTGTTCTTCTGCGACGGAGACG
GTAAGGTTCTAATTTGACTACGTTTTGACTGACTGAGGACAACGGTAAAT
CAGAACTTTTACCGTCCTCGATTTTGCGGGTCAGAATTGCGGGCTATTCC
AAATCGCTTCAGTCACTCTACCGTCCTCAAAAGTGTAAATACATAAACTC
GCTATTAGCAGAATAGTAGTCAGTATAATTTAATTAAAATCTGAATAACT
GAATAATAGGCCTGCCCCAAAAACACTGTTTCAAAATGGTGTTCCCTAAC
GATATACTGGAAGCCGTGGGAATATTTATTGAAATAAATGACATCTGCAT
TTCGCATAAACTAATATTCAATAAATTTGGAGTAAGAAATAAACATCAAA
ATCAAATCAAAAAGGAGTAAATGAAACAAGCCTAATCAAGATTCTCAAGA
CAACATAGATGATTTAAATTAGGTCTGGGATTAATAAAGCTGAGTATTCA
ATAGTTAAAAGAAACAAACAGTCAACTTTCTCTTATTCGATCTTCTGTAG
TTCAAACCTTTCTGTGATTCGATCTAAAACATAGGTCCCCTCAACTGGAA
AATTTTTTTACATACAGCTGACTCTCTTTTATTCGATTTACAAGGGAAAG
AGAATTTTCTTCGAATTAGAGAACCATTTGAATTAGTACTAGTTATCGCA
TGACTTCGAGTGCAATACGAGAAATATTTTACAAGTTCCGAGATTTTTCC
GTAATATTTTAAAATATCGGTAAAATATCGGAACGAGATTTTTCTAATTC
GAAGAAAATTCTCTTTCCCTTGTAAATCGAATTAGAGAGAGTCAACTGTA
TGTAAAAAAATTGTACAAAAGCACAATATTTCTGCTATACAGATAGGAGG
TCAGAAGAGACTAATGGTTTCGGGAAATGCGAATTAAAAGGCTATGGTTA
ACGGTTTCTGTTTTGGTCCAAAACGCCAGTTGGTTAGCAGTGACGTAAAC
CAATAGAAGCTAGAATAGCTTTATTTCGTTTCGGAGCGAAATAGAACCCT
AGCGTGTGAACGTGTTCTTATATTCATCCTATAATTTTATCCCAATTATT
ATCAATGGTTGAATATTCTTCTTCGGATTCTTCTTCTNTTCATCCTATAA
TTTTATCCCAATTATTATCAATGGTTGCATATTCTTCCTCAGATTCTTCT
TCCTCAGATCCACTTATCCATTCTTCCTCCTCATCTTCAGCAGCTTCAAC
TACCTCAACTCTGGCTGGTGCTTTCTCCTGTAAAACTTGCAAAATCTGTT
GATGTTCCTCATGGCTTTTCAGATGCTTGTCAAGCTCCCCTTTCCGTGAA
AACTGTGTACCACATTCCTTACATTGAATTGGATTAATGCCTTTATGTAC
TCTCTGTATATGTAACTTCAGATCATTTTTCTGTGAATAATTTTTACCAC
ATTCTTGACATTTAAAAGGTTGAAGCCCACGGTGAGTGATATCTATATGT
GCTATAAGACGTGATCTATGTAAAAATGACTTCCCACACTCGGTACATAC
ATGTGGCTTATTTCCCGAATGAGACCGTTGATGTTGTTTGAGACCATACT
TTCGCCCAAAACATTTGCCACACTCGTCGCATTGAAAAGGCTTCAGACCT
TTATGGACTGTATCTACATGCACAGCAAGTCTATAATGATTTCCAAAAAT
TTTACCACACTCCTCGCACTTTTTGTTTTTTGGTATACGACCAATAGGTT
TAAAAACAAACTTATTCTTTTGTTCTTCATCTTCAAGTTCAACTAGTCTT
GGTAAATTATCCATATCAATTTCACACGTTCCAACTCGTTTGCCTTCTTT
AGTAAGCTCAAATGATATTTTGATTGGAGTCTTTGAATCTGAATCTTCAC
TCACTGTATTTATCCCGATATTCTCAATTCTATAATTCATCTTGACTTTT
TGAATTCTTATCTTTATCCTAGAAAAAAATGAAATGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070652-exon-scaffold_57-1575043694:60587..60689 | TCONS_00070652-exon-scaffold_57-1575043694:60587..60689 | Clytia hemisphaerica | exon |
| TCONS_00070652-exon-scaffold_57-1575043694:57900..58343 | TCONS_00070652-exon-scaffold_57-1575043694:57900..58343 | Clytia hemisphaerica | exon |
| TCONS_00070652-exon-scaffold_57-1510915933:60587..60689 | TCONS_00070652-exon-scaffold_57-1510915933:60587..60689 | Clytia hemisphaerica | exon |
| TCONS_00070652-exon-scaffold_57-1510915933:57900..58343 | TCONS_00070652-exon-scaffold_57-1510915933:57900..58343 | Clytia hemisphaerica | exon |
| TCONS_00070652-exon-scaffold_57-1491911889:60587..60689 | TCONS_00070652-exon-scaffold_57-1491911889:60587..60689 | Clytia hemisphaerica | exon |
| TCONS_00070652-exon-scaffold_57-1491911889:57900..58343 | TCONS_00070652-exon-scaffold_57-1491911889:57900..58343 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:57900..60689 - |
Blast
BLAST of TCONS_00070652 vs. Swiss-Prot (Human)
Match: ZN396 (Zinc finger protein 396 OS=Homo sapiens GN=ZNF396 PE=1 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 6.423e-18 Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = -3
Query: 81 KNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSF 287
K +KC+ECGKIF L +H +H G KP+ CDEC K F R L QH+R+H+G KP+ C +CGK+F
Sbjct: 249 KQQKCDECGKIFSQSSALILH-QRIHSGKKPYACDECAKAFSRSAILIQHRRTHTGEKPYKCHDCGKAF 316
The following BLAST results are available for this feature:
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