TCONS_00070651 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070651
Unique NameTCONS_00070651
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070651 ID=TCONS_00070651|Name=TCONS_00070651|organism=Clytia hemisphaerica|type=transcript|length=569bp
ATCATTTTTCTATGAATAATTCTTACCACattcttgacatttaaaAGGTT
GAAGCCCACGGTGAGTGATATCTATATGTGCTATAAGACGTGATCTATGT
AAAAATGACTTCCCACACTCGGTACATACATGTGGCTTATTTCCCGAATG
AGACCGTTGATGTTGTTTGAGACCATACTTTCGCCCAAAACATTTGCCAC
ACTCGTCGCATTGAAAAGGCTTCAGACCTTTATGGACTGTATCTACATGC
ACAGCAAGTCTATaatgatttccaaaaattttaccacactcctcgcactt
tttgttttttggtaTACGACCAATaggtttaaaaacaaacttattCTTTT
GTTCTTCATCTTCAAGTTCAACTAGTCTTGGTAAATTATCCATATCAATT
TCACACGTTCCAACTCGTTTGCCTTCTTTAGTAAGCTCAaatgatatttt
gattggaGTCTTTGAATCTGAATCTTCACTCACTGTATTTATCCCGATAT
TCTCAATTCTATAATTCatcttgactttttgaattcttATCTTTATccta
gaaaaaaatgaaatgggAA
Run BLAST on NCBI

transcript from alignment at scaffold_57:57900..60652-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070651 ID=TCONS_00070651|Name=TCONS_00070651|organism=Clytia hemisphaerica|type=transcript|length=2753bp|location=Sequence derived from alignment at scaffold_57:57900..60652- (Clytia hemisphaerica)
ATCATTTTTCTATGAATAATTCTTACCACATTCTAGACATTTAAAACGAC
TTCCCACACTCGGTGCATACACGTGGTTTGTTTCAAGTGTCAGTAAATTT
GTGTTTTTCAAGGTCCGCCTTTCGTGCAAAACATTTACCACGTTCTTCAC
ATTGGAATGGTTTTATACCCAATTAGACTGCATCATTTTGCCTTTTTAAT
ATACCATTAGTGGAAAACGTTTTACCACATACATCACAATCAATCCTTCC
TGTGTGTGTTTTGTCTTCGAGTTTTGGTTGACTTGAAAGTCTTGAACACA
AAATCATTCTGTTCTGTATAAATGTAAGTTTGACGCCATGAAGTCAATTT
CCAATAGAAAGCTGACATGTACCCATTTTAATGCTATCTTTTGTAATCTC
AAATAACATAGTCAAAGAAAGTAAAAAAACGACAAAGCCAAAGGAAATGG
TGCATCTTTATCCTTTAAAGTCACCAAGAAGCCAGCAGCCAGGAGTGAGC
TATATTATCAACTGGTAAAATTAATTCCAGTTGTGAATCTAGTCGTGAAA
TGACCTCAACAGTGATTATTAGATTTTCAAGTTGAAAATCCATTTTTATT
TTTATTTTTAGAATAACTTTTCTTTACCTCTGAAAATAAATAGAACAAAA
TTTTAAAAAGGGATGATAATTTCTAATAAGGATATATTCAGTAAAGACTT
TAAAAAGTGAGTGAAGATACCCCGCAAATACATTTCATTGAGTTTCAAAA
GAGGGAGTAGGATAAAATACCGAGTTTATGTATGTCTATGTGTGTTCTTC
TGCGACGGAGACGGTAAGGTTCTAATTTGACTACGTTTTGACTGACTGAG
GACAACGGTAAATCAGAACTTTTACCGTCCTCGATTTTGCGGGTCAGAAT
TGCGGGCTATTCCAAATCGCTTCAGTCACTCTACCGTCCTCAAAAGTGTA
AATACATAAACTCGCTATTAGCAGAATAGTAGTCAGTATAATTTAATTAA
AATCTGAATAACTGAATAATAGGCCTGCCCCAAAAACACTGTTTCAAAAT
GGTGTTCCCTAACGATATACTGGAAGCCGTGGGAATATTTATTGAAATAA
ATGACATCTGCATTTCGCATAAACTAATATTCAATAAATTTGGAGTAAGA
AATAAACATCAAAATCAAATCAAAAAGGAGTAAATGAAACAAGCCTAATC
AAGATTCTCAAGACAACATAGATGATTTAAATTAGGTCTGGGATTAATAA
AGCTGAGTATTCAATAGTTAAAAGAAACAAACAGTCAACTTTCTCTTATT
CGATCTTCTGTAGTTCAAACCTTTCTGTGATTCGATCTAAAACATAGGTC
CCCTCAACTGGAAAATTTTTTTACATACAGCTGACTCTCTTTTATTCGAT
TTACAAGGGAAAGAGAATTTTCTTCGAATTAGAGAACCATTTGAATTAGT
ACTAGTTATCGCATGACTTCGAGTGCAATACGAGAAATATTTTACAAGTT
CCGAGATTTTTCCGTAATATTTTAAAATATCGGTAAAATATCGGAACGAG
ATTTTTCTAATTCGAAGAAAATTCTCTTTCCCTTGTAAATCGAATTAGAG
AGAGTCAACTGTATGTAAAAAAATTGTACAAAAGCACAATATTTCTGCTA
TACAGATAGGAGGTCAGAAGAGACTAATGGTTTCGGGAAATGCGAATTAA
AAGGCTATGGTTAACGGTTTCTGTTTTGGTCCAAAACGCCAGTTGGTTAG
CAGTGACGTAAACCAATAGAAGCTAGAATAGCTTTATTTCGTTTCGGAGC
GAAATAGAACCCTAGCGTGTGAACGTGTTCTTATATTCATCCTATAATTT
TATCCCAATTATTATCAATGGTTGAATATTCTTCTTCGGATTCTTCTTCT
NTTCATCCTATAATTTTATCCCAATTATTATCAATGGTTGCATATTCTTC
CTCAGATTCTTCTTCCTCAGATCCACTTATCCATTCTTCCTCCTCATCTT
CAGCAGCTTCAACTACCTCAACTCTGGCTGGTGCTTTCTCCTGTAAAACT
TGCAAAATCTGTTGATGTTCCTCATGGCTTTTCAGATGCTTGTCAAGCTC
CCCTTTCCGTGAAAACTGTGTACCACATTCCTTACATTGAATTGGATTAA
TGCCTTTATGTACTCTCTGTATATGTAACTTCAGATCATTTTTCTGTGAA
TAATTTTTACCACATTCTTGACATTTAAAAGGTTGAAGCCCACGGTGAGT
GATATCTATATGTGCTATAAGACGTGATCTATGTAAAAATGACTTCCCAC
ACTCGGTACATACATGTGGCTTATTTCCCGAATGAGACCGTTGATGTTGT
TTGAGACCATACTTTCGCCCAAAACATTTGCCACACTCGTCGCATTGAAA
AGGCTTCAGACCTTTATGGACTGTATCTACATGCACAGCAAGTCTATAAT
GATTTCCAAAAATTTTACCACACTCCTCGCACTTTTTGTTTTTTGGTATA
CGACCAATAGGTTTAAAAACAAACTTATTCTTTTGTTCTTCATCTTCAAG
TTCAACTAGTCTTGGTAAATTATCCATATCAATTTCACACGTTCCAACTC
GTTTGCCTTCTTTAGTAAGCTCAAATGATATTTTGATTGGAGTCTTTGAA
TCTGAATCTTCACTCACTGTATTTATCCCGATATTCTCAATTCTATAATT
CATCTTGACTTTTTGAATTCTTATCTTTATCCTAGAAAAAAATGAAATGG
GAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043957XLOC_043957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070651-exon-scaffold_57-1575043694:60624..60652TCONS_00070651-exon-scaffold_57-1575043694:60624..60652Clytia hemisphaericaexon
TCONS_00070651-exon-scaffold_57-1575043694:57900..58439TCONS_00070651-exon-scaffold_57-1575043694:57900..58439Clytia hemisphaericaexon
TCONS_00070651-exon-scaffold_57-1510915933:60624..60652TCONS_00070651-exon-scaffold_57-1510915933:60624..60652Clytia hemisphaericaexon
TCONS_00070651-exon-scaffold_57-1510915933:57900..58439TCONS_00070651-exon-scaffold_57-1510915933:57900..58439Clytia hemisphaericaexon
TCONS_00070651-exon-scaffold_57-1491911889:60624..60652TCONS_00070651-exon-scaffold_57-1491911889:60624..60652Clytia hemisphaericaexon
TCONS_00070651-exon-scaffold_57-1491911889:57900..58439TCONS_00070651-exon-scaffold_57-1491911889:57900..58439Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:57900..60652 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.446	35.494	30.3848	28.9037	21.6739	13.2648	12.5785	19.2536	10.6084	7.47502	6.49242	5.45808	6.05461	7.85427	9.37066	11.8022	13.2389	12.5075	6.1188	4.7128	9.8549	7.39783	42.9794	43.7651	9.57396	11.5113	7.45793	7.83256	20.1369	29.3138
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00070651 vs. Swiss-Prot (Human)
Match: ZN436 (Zinc finger protein 436 OS=Homo sapiens GN=ZNF436 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.288e-25
Identity = 53/103 (51.46%), Postives = 65/103 (63.11%), Query Frame = -3 
Query:    1 KNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS*KND 309
            K  KC ECGK F     L  H  T H G KP++C+ECGK F R   L QHQR+H+G KP+ C ECG+ F  RS LI H  + H G +P+KC ECGKN+S  +D
Sbjct:  220 KPHKCNECGKSFCRLSHLIQHQRT-HSGEKPYECEECGKSFSRSSHLAQHQRTHTGEKPYECNECGRGFSERSDLIKHYRV-HTGERPYKCDECGKNFSQNSD 320

HSP 2 Score: 97.0561 bits (240), Expect = 1.657e-23
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = -3 
Query:    1 CEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS*KND 297
            C ECGK FG    L  H  T+H G KP +C+ECGK F R   L QHQR+HSG KP+ C ECGKSF   S L  H   TH G +P++C ECG+ +S ++D
Sbjct:  196 CNECGKSFGRSSHLIQH-QTIHTGEKPHKCNECGKSFCRLSHLIQHQRTHSGEKPYECEECGKSFSRSSHLAQH-QRTHTGEKPYECNECGRGFSERSD 292

HSP 3 Score: 97.0561 bits (240), Expect = 1.906e-23
Identity = 51/96 (53.12%), Postives = 61/96 (63.54%), Query Frame = -3 
Query:   13 KCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS 300
            KC ECGK F     L  H  T H G +P+ C+ECGK FGR   L QHQ  H+G KPH C ECGKSF   S LI H   TH G +P++C+ECGK++S
Sbjct:  167 KCYECGKGFSRSSHLIQHQRT-HTGERPYDCNECGKSFGRSSHLIQHQTIHTGEKPHKCNECGKSFCRLSHLIQH-QRTHSGEKPYECEECGKSFS 260

HSP 4 Score: 89.7373 bits (221), Expect = 7.519e-21
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = -3 
Query:    1 KCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS*KND 300
            KC+ECGK F  +  L  H    H G KP+ C+ECG+ F R   L QHQR+H+G KP+ C  CGKSF   S LI H  I H G +P++C EC +++  ++D
Sbjct:  307 KCDECGKNFSQNSDLVRH-RRAHTGEKPYHCNECGENFSRISHLVQHQRTHTGEKPYECNACGKSFSRSSHLITHQKI-HTGEKPYECNECWRSFGERSD 404

HSP 5 Score: 88.1965 bits (217), Expect = 2.788e-20
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = -3 
Query:   13 KNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS 309
            K  +CEECGK F     LA H  T H G KP++C+ECG+ F  +  L +H R H+G +P+ C ECGK+F   S L+ H    H G +P+ C ECG+N+S
Sbjct:  248 KPYECEECGKSFSRSSHLAQHQRT-HTGEKPYECNECGRGFSERSDLIKHYRVHTGERPYKCDECGKNFSQNSDLVRH-RRAHTGEKPYHCNECGENFS 344

HSP 6 Score: 87.8113 bits (216), Expect = 4.076e-20
Identity = 47/94 (50.00%), Postives = 57/94 (60.64%), Query Frame = -3 
Query:   16 CEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNY 297
            C  CGK F     L  H  T H G +P++C ECGK F R   L QHQR+H+G +P+ C ECGKSF   S LI H  I H G +P KC ECGK++
Sbjct:  140 CSHCGKAFSQISDLNRHQKT-HTGDRPYKCYECGKGFSRSSHLIQHQRTHTGERPYDCNECGKSFGRSSHLIQHQTI-HTGEKPHKCNECGKSF 231

HSP 7 Score: 86.6557 bits (213), Expect = 8.370e-20
Identity = 42/99 (42.42%), Postives = 60/99 (60.61%), Query Frame = -3 
Query:   13 KNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS 309
            K  +C  CGK F     L  H   +H G KP++C+EC + FG +  L +HQR+H+G KP+ C +CGK F   S LI H  + H G +P++C EC K++S
Sbjct:  360 KPYECNACGKSFSRSSHLITH-QKIHTGEKPYECNECWRSFGERSDLIKHQRTHTGEKPYECVQCGKGFTQSSNLITHQRV-HTGEKPYECTECEKSFS 456

HSP 8 Score: 85.1149 bits (209), Expect = 3.473e-19
Identity = 52/145 (35.86%), Postives = 77/145 (53.10%), Query Frame = -3 
Query:   13 ISFELTKEGKRVGTCEIDMDNLPRLVELEDEEQKNKFVFKPIGRIPKNKKCEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS 447
            I  + T  G++   CE    +  R   L  + Q+     KP        +C ECG+ F     L  H   VH G +P++CDECGK F +   L +H+R+H+G KP+ C ECG++F   S L+ H   TH G +P++C  CGK++S
Sbjct:  238 IQHQRTHSGEKPYECEECGKSFSRSSHLA-QHQRTHTGEKPY-------ECNECGRGFSERSDLIKHY-RVHTGERPYKCDECGKNFSQNSDLVRHRRAHTGEKPYHCNECGENFSRISHLVQH-QRTHTGEKPYECNACGKSFS 372

HSP 9 Score: 82.0333 bits (201), Expect = 3.449e-18
Identity = 43/95 (45.26%), Postives = 57/95 (60.00%), Query Frame = -3 
Query:   13 CEECGKIFGNHYRLAVHVDTVHKGLKPFQCDECGKCFGRKYGLKQHQRSHSGNKPHVCTECGKSFLHRSRLIAHIDITHRGLQPFKCQECGKNYS 297
            C ECG+ F     L  H  T H G KP++C+ CGK F R   L  HQ+ H+G KP+ C EC +SF  RS LI H   TH G +P++C +CGK ++
Sbjct:  336 CNECGENFSRISHLVQHQRT-HTGEKPYECNACGKSFSRSSHLITHQKIHTGEKPYECNECWRSFGERSDLIKH-QRTHTGEKPYECVQCGKGFT 428
The following BLAST results are available for this feature:
BLAST of TCONS_00070651 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN4363.288e-2551.46Zinc finger protein 436 OS=Homo sapiens GN=ZNF436 ... [more]
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