TCONS_00070642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070642
Unique NameTCONS_00070642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070642 ID=TCONS_00070642|Name=TCONS_00070642|organism=Clytia hemisphaerica|type=transcript|length=236bp
gttttacaggtttttagattaaaaaaatataatgatgagaaaaatgaaGT
AATAAGTAAAGCATTTGTGTCATTTCATAATATCTAATGTCTGGTAATTA
GTTGCGAAATGCTGATGGTATAACATTTAAATGACGTTTTAATGTGTTTT
GCGTGTAACCTGTTATCGTAGatATATTGGTTGATCAAAAGTACGTACAA
AGTCGTGAATACAGTGGCTTCTTTATCCAATTTACC
Run BLAST on NCBI

transcript from alignment at scaffold_57:581682..582158+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070642 ID=TCONS_00070642|Name=TCONS_00070642|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at scaffold_57:581682..582158+ (Clytia hemisphaerica)
gttttacaggtttttagattaaaaaaatataatgatgagaaaaatgaaGT
AATAAGTAAAGCATTTGTGTCATTTCATAATATCTAATGTCTGGTAATTA
GTTGCGAAATGCTGATGGTATAACATTTAAATGACGTTTTAATGTGTTTT
GCGTGTAACCTGTTATCGTAGGTATTTTCTCGTATCTTTTATCTATGTAT
AGATTTTTTCCTTAATTTTTAATAATTGTTGGGTTTTGAAGGTAttttaa
aagcagtcaaaattACCCACAAAAATTTCAGTAATGATAGTCTAAGGTAA
TGGGGGTATATTGTTCTCTccatctttctgattttttgtgattgatgaaa
attgattatGATTGATAACAATTTTAATTAATAACTTTTCGTgtgtatta
tttttattatagatATATTGGTTGATCAAAAGTACGTACAAAGTCGTGAA
TACAGTGGCTTCTTTATCCAATTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043950XLOC_043950Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070642-exon-scaffold_57-1491911889:581682..581852TCONS_00070642-exon-scaffold_57-1491911889:581682..581852Clytia hemisphaericaexon
TCONS_00070642-exon-scaffold_57-1510915933:581682..581852TCONS_00070642-exon-scaffold_57-1510915933:581682..581852Clytia hemisphaericaexon
TCONS_00070642-exon-scaffold_57-1575043694:581682..581852TCONS_00070642-exon-scaffold_57-1575043694:581682..581852Clytia hemisphaericaexon
TCONS_00070642-exon-scaffold_57-1491911889:582094..582158TCONS_00070642-exon-scaffold_57-1491911889:582094..582158Clytia hemisphaericaexon
TCONS_00070642-exon-scaffold_57-1510915933:582094..582158TCONS_00070642-exon-scaffold_57-1510915933:582094..582158Clytia hemisphaericaexon
TCONS_00070642-exon-scaffold_57-1575043694:582094..582158TCONS_00070642-exon-scaffold_57-1575043694:582094..582158Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:581682..582158 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91853	1.87086	1.08613	0	0	0	0	1.15459	0	0	3.88745	0.638864	1.91393	4.63781	0.544701	1.75364	2.88046	2.95238	2.03944	0	0.92747	1.35716	6.59923	2.99983	0	0.919177	0	1.40377	5.32353	4.33907
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top