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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070641 ID=TCONS_00070641|Name=TCONS_00070641|organism=Clytia hemisphaerica|type=transcript|length=2810bp
GTACTACAGAAAAATCTATCACCTAACCAATGTGCTACTTGTTTAGAATT
TGCACATTATTTACTTTCCATCGACATCTCTGGTGTTTCTCCTGATTTGC
GTCAACAGTATTTGGAGTTTGCTGGAAGCATGTCATCAGTATTATTCGAG
AGTTTAAAAGGAGACGAGAATACTAAGCTAACAAATGCTTCAGTTACATG
TTTAGCTAAGATCATGGAAGTACAAAATTTGCTAACAGACGTTTCAACCA
TTGTTGATGCCGAACTGATATcccaacattttttcaacatgCTATTCAAC
AAAGTCAAGAAATGCCCAACAGAACCAGTCAATGATTTCATGAGAGTATT
ATGGATTCATTATCCATCACACATAAGAGAGAAGTTTTTGGCTCCTCTCC
AGCAATTAGATTCTGAAAAAGCTGTTGTTTATATACCATTGTTATCGCAT
TGTTCTCAAGATGACGAAGCTGCCATTTTGAAATATCTGATCAAGATGAT
TTTACCTTTAATTGATTCTGAAAACGTGGAAATATTCGATAAATTTGTTT
CTAGTTTTTGTGAATTACTTACCAAATCAAAGACAGCATACACCAGAACT
GATTTTCTGGACCTCCTTATTGAGAGTGTTAGCTCGAGACAAGGTTTCCT
CAAACATAGTCATTTATGGGGCTTTAGTAGAATTATGGTCTGTGTTTTTA
ACAATCTACCAGAAACCCTTCAAAGAGAGCTGATCAACGAAGTTAAAAAC
TCAATCCAAGAGTCAACGAATATATCATTCAAAGACATTTTTATAGTATT
TTGTGCTTTATACAAATCGAACAAAAGTGATTTAGCAGAGGATTTTGAAA
TCCTTGAAAGTTTTCTCATAAAGACTGGTAATGAATCAAGAAATGATGTG
TTGCAAACACTGATTGGTTTATCGCTGGCATTGCTGGTGAATCGATATGG
TGCTTCTCCGAAAGTAGAATCTCTGTTAGAAGATTTCGACAACTCGAACG
TCCTAGAGCACGCTATCGGTCGTTTATCATGGATCGTCAAAGGCTGTGTC
TCAAGCTGGCAACCAAACTCTCCAAAATTCTTAAGCAAGCTTATCGAATG
TTTAACCAACGATCAAACAGCCCCTAAAGCAACAGAAGGCTTTGAATTGT
TTTGCTGTCCAAACGACCCATTTATTGAAGCAGCCAATTGGTCCAAAAAA
CTGATGAGTCGCCAACGCTTCTCTCAATTTGTTTTACCACAGCTGGTTCA
ATTATACCATGAAGGGACTGATTTGACCAGATCATGCATTTTGAAGAGTA
TCTCCTTCACGCTTCAAGCTACacccaagaaaattttgatgcCTTATTTG
AACAAGTTGGTACCACTGCTCTTACATTCCTTGGAGATCGAACGTGGTGA
AAATGTTCTGGCATCCACAATCACTACCATTATATCTCTCACGAATGAAA
ACCAGCAAGTCATCCAAGATCATATCCAAACGTTGATTGGACGTCTTCTG
AACGTTGTCACACACGACCGAATGAAAGTCCGTATAGTCGCTTTACAATG
TTTAATGAAACTTTCCACTTACAAATATCATGATATTGTACCTCTCAAGA
AAAATGTGGTCAAACGGATTGCACCCTTGTTGGATGACAAGAAAAGACTG
GTTAGGAAAGAAGCAGTCTCGTGTTCAAAAGTGTGGCATTTAGTTGCATG
AGAAAGTGTCCCTTTTTggatttatattttatatttttctgttgtttttc
aTTGCAGTTAGTTAGTTTTTTATGTCTTTTTAACGGATGACCTTTCCCTA
TCGTTGTCTGTCAGCTTTTGTGCAAAAAGCTGCATGAAGGGCAGTTGGGC
TTTAGTTTAGAAGGATCGGACAACGTCTGAGTTAATCATAAAGTTGCATT
TATCTGACATTGAACCCTAGTCATATCAAACTTGTTTCCTAGTAACATGA
CAGTCGCTTTTGTGTATTTCTTAGAACCGAGAAAAGCCCAATGGGGGTTG
GAAATCTTTATCAGGGTTTTGTCTAATTTGAGTGATTATGATTTGCAtga
taaattctaaaaatgtcAATGGGACTAggtttttaaagatattttgacca
atcatttttataaaaagtaccTGACCCAAAGAAAGCCGTgtttttcaagt
acttttgcAAAGCGATTCTCTTTAGAAGGAGAGGGTCACACTACTATGGT
CATTAtattaaaaagtttgaaacttacttaaattatgacgtcacaactCG
AATTTTCCTCTACGTGTATCAAATGAATAGTATTCCCACAGAGTTTAAGC
TAGTACATTCTGACGGTCCCGGAAATTTATCAGCCGGTAGATATAATTCC
ATAAGGAAATCAAATTACTCTCTTTATCATACCTTGAATGAGATTTCCGA
GTTATAGTAACTCAAGATAAAAGAAAGGAGGCGTGACTCAGGCTTAATAC
AATGCAACTCGTATTTTAAATGCCTCTACGTTCATCACAAAATTATTCTC
TTATATAATCAGAGAATGTTTAGCCCCCAGTTTTTAATAGTAATTTtata
gtaaaatattttttcgattcTATTTTTTGTGTGTTTGTGTCAGGACGATA
GTGTCCCAGCCGGTAAAAAGTGTCTTATCAACGTCCATTGGACGTTCATg
gcatccatataacgttatattaaCATTCATATAGCGCCGCGTGCCGGTTA
AAGGAATTGAGCatattatttttagaaaaatacctACTCTTTATACTTTT
GATAATATCATTACTACATTTTATTATAATATAGACTTACACCATTAAGA
TACCGTATAC Run BLAST on NCBI transcript from alignment at scaffold_57:574055..580478+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070641 ID=TCONS_00070641|Name=TCONS_00070641|organism=Clytia hemisphaerica|type=transcript|length=6424bp|location=Sequence derived from alignment at scaffold_57:574055..580478+ (Clytia hemisphaerica)
GTACTACAGAAAAATCTATCACCTAACCAATGTGCTACTTGTTTAGAATT
TGCACATTATTTACTTTCCATCGACATCTCTGGTGTTTCTCCTGATTTGC
GTCAACAGTATTTGGAGTTTGCTGGAAGCATGTCATCAGTATTATTCGAG
AGTTTAAAAGGAGACGAGAATACTAAGCTAACAAATGCTTCAGTTACATG
TTTAGCTAAGATCATGGAAGTACAAAATTTGCTAACAGACGTTTCAACCA
TTGTTGATGCCGAACTGATATcccaacattttttcaacatgCTATTCAAC
AAAGTCAAGAAATGCCCAACAGAACCAGTCAATGATTTCATGAGAGTATT
ATGGATTCATTATCCATCACACATAAGAGAGAAGTTTTTGGCTCCTCTCC
AGCAATTAGATTCTGAAAAAGCTGTTGTTTATATACCATTGTTATCGCAT
TGTTCTCAAGATGACGAAGCTGCCATTTTGAAATATCTGATCAAGATGAT
TTTACCTTTAATTGATTCTGAAAACGTGGAAATATTCGATAAATTTGTTT
CTAGTTTTTGTGAATTACTTACCAAATCAAAGACAGCATACACCAGAACT
GATTTTCTGGACCTCCTTATTGAGAGTGTTAGCTCGAGACAAGGTTTCCT
CAAACATAGTCATTTATGGGGCTTTAGTAGAATTATGGTCTGTGTTTTTA
ACAATCTACCAGAAACCCTTCAAAGAGAGCTGATCAACGAAGTTAAAAAC
TCAATCCAAGAGTCAACGAATATATCATTCAAAGACATTTTTATAGTATT
TTGTGCTTTATACAAATCGAACAAAAGTGATTTAGCAGAGGATTTTGAAA
TCCTTGAAAGTTTTCTCATAAAGACTGGTAATGAATCAAGAAATGATGTG
TTGCAAACACTGATTGGTTTATCGCTGGCATTGCTGGTGAATCGATATGG
TGGTAAGAATACTCTTTGTTTGTTTGATGTGTTTGTACAATGGagtttcc
ataattcgaacacaaggggaacacaaatttgctcGATTTCAGGAAACTTc
gagcaggggggggggtcagttgGTACCAGACATCATgacggttagtaccg
tggtggggcatatttcattttttgaatttgcaGTTAGTACCTTGTGGGTA
CTAACTGCTGTATATGGTGGTGTAAAATGAATTTCAACTCAATCAAATGG
TActtttagggtactaactgctatGAGGGGTGGTGTGCcataaatttcaa
gtcaatcaaATGGTACCTTTAGggtactaactgcaaaaaagACTGGTCTT
ATCTATGTCAATAGCCTTTTTCAATACAGGAGCTTTAATTGTTTCACTCT
CAAGACTTACCAAAGCATGAATGTAAATCCCATAAggtttcttgttttga
aattgtgtGCCACTACTAACTTACGTCATTATGATTTACGTTTTTTTAAC
TGTGCTTGTCAGCCAGCtttttgcttttatttatttgcaCAGCACTGAAA
TGTCTTCTTTAGCTTTGCTTCAAGTCGTTTGTCAAACAATGCAAAAGTGA
TGTTTTATTTCTGGGGATTTAGACCTAATATGTTGGGCAGACTTTACTTT
ACATGTTGAGCTTTATAGATTTGTACCATACTGTATATGTTGGGGTTTGT
GTTTATTTATGATAAATCATATAGAGAAAAATCACCAAGGTTAGTGTCAA
CCCCAGGGCTGCCTAGGGTACTGACAGGTTTCAAATAGTGATTACCCTAA
GTGCCAGCCACTCAAAACCATTAAACCGGGCAGAATAGGGGGTGGTACCA
ACCTGTCAATAGTCAAATGCACTTAGTACTGTGGGATACTAGGTGCGAAT
AGGGGTGGGGTAGCGTCAACCTTCCAATAGTCAGATACGCTTTGTCCTTC
ATGGTACTAAATGCAAATAGGGGTGGTGTCCACCTGTCAATGGTCAAAAA
CACTTAGTACCTTTGGGTACTAACTGCTAAGGGGTGGTGGGTATactctc
aaattttcaattttgcagtTAGTCATCATGACGTCGGGTaccaactgcat
gacccccccccccgcttcgAGATAGGTTTATAGAACATTGTTAACTGAta
ggacgagaaaacttgttcgagttaaggagacatttgagttagaggttcga
gttaaagagtttCTGTATATCTAATTCACTTGAGCACCTTTGCATTGGTC
TTCCTTGAGGCTTTCACCGGTTTCGCCGTTCGTTTTACTGTCCCATGGTA
TAAAGGAGTTAAGGTTTTAGGCACTTTATAATCAGCAGAACTCAGATGAA
AACTTGAATCAAAGTTATCAGTTTAAAAAGAATTCTCTTTAGTAATAACA
AACATTACTACTTGTTCAATTTAAGGGTTTTTTTTAAAATGCCAACTTGC
ATAGTTTCAAATCTTTCGTTATTTCAGCTTCTCCGAAAGTAGAATCTCTG
TTAGAAGATTTCGACAACTCGAACGTCCTAGAGCACGCTATCGGTCGTTT
ATCATGGATCGTCAAAGGCTGTGTCTCAAGCTGGCAACCAAACTCTCCAA
AATTCTTAAGCAAGCTTATCGAATGTTTAACCAACGATCAAACAGCCCCT
AAAGCAACAGAAGGCTTTGAATTGTTTTGCTGTCCAAACGACCCATTTAT
TGAAGCAGCCAATTGGTCCAAAAAACTGATGAGTCGCCAACGCTTCTCTC
AATTTGTTTTACCACAGCTGGTTCAATTATACCATGAAGGGACTGATTTG
ACCAGATCATGCATTTTGAAGAGTATCTCCTTCACGCTTCAAGCTACacc
caagaaaattttgatgcCTTATTTGAACAAGGTATGTTGCTAttaaaggg
attatcagattatttttgatattaGGCTTACTTTTATGTTCCAGAGAGAT
ACCTCTAAATCTTTTgacccaattttttttccaaaaattatatatttgac
tttgaaatctctaaaaatgagtctttacacagtcttaacgttgaatttct
attattttcaagtaaaagtttgaaaattcaaagtcgaatatctcagcttt
ggagaaaaattgggtcaaaaactttggaggtgtttcttgggaccataaaa
ggtatctctaaggcaaatatcaaaaatctgataatccctttaaCCGTTTA
ACAGTTATTTTAATTAATAATGAATAAATAAGTCTTTAAGGTCACTTGCA
TAAAAGTTATAGATGGTCTATATATATACAACATCCACTGTTCTTTGTCA
CGCTCTGAAGGTGAAATCTATGTACACAAAGCATTAGTTTAGTATATTTT
AATTTCGAAATAATCCTTGAAATTCTTGATCTATCTACTATAACACTAAA
TAACACTTTACTCAGATACATAAGTAGCATTTTGAATGAAGAGTTTAGCG
TTCATATGTTATTAtcaagcccgggggggggtactagggaaagatgggtt
acggggatgctccgctggtcagggtaccttttttaacctccatgagtccc
aggtagggtcgcaaaaacaccaaaatagaaaaatcagtccctcgtagggt
ttctatttttggaaaatttggggaaaaagtagaaaatttgagaaaatttt
ggaattttagtcccattcagggtcacttttttcgcaaatttcgagtccca
cgtagggtccatttttcgaacctcagcggagcacccccgtcggtcgataa
gggtagtaccccccccctcgGGTTATCAAGACCTGACCATGAAGTCTTTA
GGGCCAATACTTTTCTATTGGTTCAGCTTCATTCATTGTTCCATTTATTT
CTTCAATTATAATGTATCTCGTGCTAAAGACatgtttgaaaatgttaata
tttACTCGGTAGAAATAGAAAACCTATCAATGTTTGAAAGTTCATATCGT
ATATAGTTTTATGCTTGAAATAGTGGGTTGGATCACtgaataagaaaaat
atttttttatatttttaaactgCTTTGAAGTTAATTCGCTGGAGTAACTA
TTCTTGATTTAGTTAGTAAATTTTCAATACACATAATCAACATTAAGTTA
AATTTGTGAAAGATTCTGAAGGATGAATTGTTGGGTTCGGTGTAGTATCA
GAAATCGAAATCAACAACAGTTTTATTCACTTAGTTAGTACCACCACTCA
TGCACTTTGATAAAGGGATTGGCCtttaaacaggggggggggggggtcgg
tagtaaaatctcagacataatgacgtttactacggtggtggtgtgacgaa
aaatcgaaaaaagatttactacccagggtagttaaatataaaatgggtgg
tatctatgtgttaaatgtttttactacctgggtagttaaaactggtaaaa
ttagcaaattttagctatttttgtaattctcttaattttttggatgactt
ttctgaaaaaatctgaaaatttttataatttgaaaaaattatttgttgca
aagttgtttgctgcaaacaaaaaattctcgaaatctTTTGTTAATATAAA
AAGGattttaattctaagggcaagACATTAGattttgcactaagtgaaaa
atgtgtcacagaaataatcattttttagcttttttggaaaataagtccga
aaagcaaccaaaaaataggtggtctccatgacaaattgtcccaaaaactt
ttactacaagGGTAGTAAAaaacctcttccaagagtctgggtggtggtat
gtaaaaattcgtaaaaatccttttactattCATACATGTTTGAGATTTTA
CTATCGACCCCTCCCCTGCTTTAAAACGAGGAGTTTTAGGGAGAGAACAT
TATGTTTTGTTaagccattatggaagcaaataATATTCGAATCTGTTGAG
ACAATTCCTTAATCGAACATACTTATGTAGCATTACAAAACATGGAAAAC
TTCTATGTAATTTTTGATCCACATTTCATACAAGGATTTGTTACAATTTA
TTGTGTTTTTCTTCATGTAGTTGGTACCACTGCTCTTACATTCCTTGGAG
ATCGAACGTGGTGAAAATGTTCTGGCATCCACAATCACTACCATTATATC
TCTCACGAATGAAAACCAGCAAGTCATCCAAGATCATATCCAAACGTTGA
TTGGACGTCTTCTGAACGTTGTCACACACGACCGAATGAAAGTCCGTATA
GTCGCTTTACAATGTTTAATGAAACTTTCCACTTACAAATATCATGATAT
TGTACCTCTCAAGAAAAATGTGGTCAAACGGATTGCACCCTTGTTGGATG
ACAAGAAAAGACTGGTTAGGAAAGAAGCAGTCTCGTGTTCAAAAGTGTGG
CATTTAGTTGCATGAGAAAGTGTCCCTTTTTggatttatattttatattt
ttctgttgtttttcaTTGCAGTTAGTTAGTTTTTTATGTCTTTTTAACGG
ATGACCTTTCCCTATCGTTGTCTGTCAGCTTTTGTGCAAAAAGCTGCATG
AAGGGCAGTTGGGCTTTAGTTTAGAAGGATCGGACAACGTCTGAGTTAAT
CATAAAGTTGCATTTATCTGACATTGAACCCTAGTCATATCAAACTTGTT
TCCTAGTAACATGACAGTCGCTTTTGTGTATTTCTTAGAACCGAGAAAAG
CCCAATGGGGGTTGGAAATCTTTATCAGGGTTTTGTCTAATTTGAGTGAT
TATGATTTGCAtgataaattctaaaaatgtcAATGGGACTAggtttttaa
agatattttgaccaatcatttttataaaaagtaccTGACCCAAAGAAAGC
CGTgtttttcaagtacttttgcAAAGCGATTCTCTTTAGAAGGAGAGGGT
CACACTACTATGGTCATTAtattaaaaagtttgaaacttacttaaattat
gacgtcacaactCGAATTTTCCTCTACGTGTATCAAATGAATAGTATTCC
CACAGAGTTTAAGCTAGTACATTCTGACGGTCCCGGAAATTTATCAGCCG
GTAGATATAATTCCATAAGGAAATCAAATTACTCTCTTTATCATACCTTG
AATGAGATTTCCGAGTTATAGTAACTCAAGATAAAAGAAAGGAGGCGTGA
CTCAGGCTTAATACAATGCAACTCGTATTTTAAATGCCTCTACGTTCATC
ACAAAATTATTCTCTTATATAATCAGAGAATGTTTAGCCCCCAGTTTTTA
ATAGTAATTTtatagtaaaatattttttcgattcTATTTTTTGTGTGTTT
GTGTCAGGACGATAGTGTCCCAGCCGGTAAAAAGTGTCTTATCAACGTCC
ATTGGACGTTCATggcatccatataacgttatattaaCATTCATATAGCG
CCGCGTGCCGGTTAAAGGAATTGAGCatattatttttagaaaaatacctA
CTCTTTATACTTTTGATAATATCATTACTACATTTTATTATAATATAGAC
TTACACCATTAAGATACCGTATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070641-exon-scaffold_57-1491911889:574055..575006 | TCONS_00070641-exon-scaffold_57-1491911889:574055..575006 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1510915933:574055..575006 | TCONS_00070641-exon-scaffold_57-1510915933:574055..575006 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1575043694:574055..575006 | TCONS_00070641-exon-scaffold_57-1575043694:574055..575006 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1491911889:576482..576885 | TCONS_00070641-exon-scaffold_57-1491911889:576482..576885 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1510915933:576482..576885 | TCONS_00070641-exon-scaffold_57-1510915933:576482..576885 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1575043694:576482..576885 | TCONS_00070641-exon-scaffold_57-1575043694:576482..576885 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1491911889:579025..580478 | TCONS_00070641-exon-scaffold_57-1491911889:579025..580478 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1510915933:579025..580478 | TCONS_00070641-exon-scaffold_57-1510915933:579025..580478 | Clytia hemisphaerica | exon |
| TCONS_00070641-exon-scaffold_57-1575043694:579025..580478 | TCONS_00070641-exon-scaffold_57-1575043694:579025..580478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_57 | supercontig | scaffold_57:574055..580478 + |
Blast
BLAST of TCONS_00070641 vs. Swiss-Prot (Human)
Match: MMS19 (MMS19 nucleotide excision repair protein homolog OS=Homo sapiens GN=MMS19 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 8.291e-23 Identity = 87/267 (32.58%), Postives = 132/267 (49.44%), Query Frame = 1
Query: 928 ALLVNRYGASPKVESLLE--------DFDNSNVLEHAIGRLSWIVKGCVSSWQPNSPKFLSKLIECLTNDQTAPKATEGFELFC--CPNDPFIEAANWSKKLMSRQRFSQFVLPQLVQLYHEGTDLTRSCILKSISFTLQATPKKILMPYLNKLVPLLLHSLEIERGENVLASXXXXXXSLTNENQQVIQDHIQTLIGRLLNVVTHDRMKVRIVALQCLMKLSTYKYHDIVPLKKNVVKRIAPLLDDKKRLVRKEAVSCSKVWHLVA 1698
A L+N++ A +++ L+ + A L W+ K V + P S ++L+ L++ + P A +GF L C D A + ++M RQRF +P LVQ +H + LK +S L PK +L+P L L+ LLL +L V ST++ + L E QV+ H+ TL+ + LN+ + M VRI ALQC+ L+ ++P K V++ +A LDDKKRLVRKEAVS W L+
Sbjct: 762 AGLLNKHPAGQQLDEFLQLAVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADGFSLLMSDC-TDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALSCPDCV-VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFLLG 1026
The following BLAST results are available for this feature:
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