TCONS_00070633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070633
Unique NameTCONS_00070633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070633 ID=TCONS_00070633|Name=TCONS_00070633|organism=Clytia hemisphaerica|type=transcript|length=702bp
aattcaatttttatcgaataagggagcgtatcgtaGAACGTCGAGTTGGA
GAGCGTGAACTTTAATTACTATTTGTTCTGGGGGTATAACCAATACTTCG
TCGTTTGACTATTTTGAACGCAGAAAATTTATTTACTCTATTTAGAAAAC
AATCTGATAGAAGCAACGAACGCAGCAGAGAGCTATCTACTCATGATTCC
CAGTGATCCTGTTATGTCAAAGAATCTCTACTGGTACCAAAATCAACCAG
CTGTCAAAGGAAAAGCTGTTGGCCCAAGACCAGTAAGCTTTGTTTTGGAT
ACGAAAATATTCATTAGGTTTCACTTATTTTGTATTATTTCTCTAGCGGC
TGTCGGTGGAGCCAGGAGTGaattctatttgcgctagacctgggagatcg
aattcTAAAGCTGAGCAGCACACCTTCTTTCACTTTCAGCTCCCTGTTAT
TTACCGCCTAGATCGTACTCAATCTGAGTTACTTATTCGCTGAGTTCGCA
Gtggaccggggatcgaacccacaacccttaggattataaggcgaatgctc
taccgactgagctaaccggccacAATGTGGAACCTTAGCTCTAGTTTGGC
TATTCTAATAACTCTATCTAAGGCAGATAGTTGGCTGTCTAAAGCCGAta
cattgccctcttttgacgtcaacatgcaatgtcttctttcaatcttttgc
aa
Run BLAST on NCBI

transcript from alignment at scaffold_57:221900..222601+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070633 ID=TCONS_00070633|Name=TCONS_00070633|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at scaffold_57:221900..222601+ (Clytia hemisphaerica)
aattcaatttttatcgaataagggagcgtatcgtaGAACGTCGAGTTGGA
GAGCGTGAACTTTAATTACTATTTGTTCTGGGGGTATAACCAATACTTCG
TCGTTTGACTATTTTGAACGCAGAAAATTTATTTACTCTATTTAGAAAAC
AATCTGATAGAAGCAACGAACGCAGCAGAGAGCTATCTACTCATGATTCC
CAGTGATCCTGTTATGTCAAAGAATCTCTACTGGTACCAAAATCAACCAG
CTGTCAAAGGAAAAGCTGTTGGCCCAAGACCAGTAAGCTTTGTTTTGGAT
ACGAAAATATTCATTAGGTTTCACTTATTTTGTATTATTTCTCTAGCGGC
TGTCGGTGGAGCCAGGAGTGaattctatttgcgctagacctgggagatcg
aattcTAAAGCTGAGCAGCACACCTTCTTTCACTTTCAGCTCCCTGTTAT
TTACCGCCTAGATCGTACTCAATCTGAGTTACTTATTCGCTGAGTTCGCA
Gtggaccggggatcgaacccacaacccttaggattataaggcgaatgctc
taccgactgagctaaccggccacAATGTGGAACCTTAGCTCTAGTTTGGC
TATTCTAATAACTCTATCTAAGGCAGATAGTTGGCTGTCTAAAGCCGAta
cattgccctcttttgacgtcaacatgcaatgtcttctttcaatcttttgc
aa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043945XLOC_043945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070633-exon-scaffold_57-1491911889:221900..222601TCONS_00070633-exon-scaffold_57-1491911889:221900..222601Clytia hemisphaericaexon
TCONS_00070633-exon-scaffold_57-1510915933:221900..222601TCONS_00070633-exon-scaffold_57-1510915933:221900..222601Clytia hemisphaericaexon
TCONS_00070633-exon-scaffold_57-1575043694:221900..222601TCONS_00070633-exon-scaffold_57-1575043694:221900..222601Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:221900..222601 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0973676	0.33037	0.527641	0	0.0848078	0	0	0	0	0	0	0.117362	0	0	0	0.0686391	0	0	0	0	0.130534	0.103971	0	0	0	0	0	0	0.10542
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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