|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070628 ID=TCONS_00070628|Name=TCONS_00070628|organism=Clytia hemisphaerica|type=transcript|length=3238bpRun BLAST on NCBI transcript from alignment at scaffold_57:210447..230775+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070628 ID=TCONS_00070628|Name=TCONS_00070628|organism=Clytia hemisphaerica|type=transcript|length=20329bp|location=Sequence derived from alignment at scaffold_57:210447..230775+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070628 vs. Swiss-Prot (Human)
Match: P3H2 (Prolyl 3-hydroxylase 2 OS=Homo sapiens GN=P3H2 PE=1 SV=1) HSP 1 Score: 330.102 bits (845), Expect = 2.676e-98 Identity = 204/649 (31.43%), Postives = 333/649 (51.31%), Query Frame = 2
Query: 287 YDELYQSGRTSYDNDNHLEAVSFFEKAIADYRHEQEVKGQCWLRCQDSIKDTQSVYSTLIDGQLNFLHYVIKTRSCFQLCKEKFLG---RRGRIAKYVKELFENKEPYSFLQYSLYKIGEVSKALAAAYTHFEANPSNELMKENIEILMSKQNKDWADLTSLEEPPHISLYKKGEKAYTDSDFKQCISTFEESLTLFYKELAKCNAVCEEQDTTKE---VSYTASLFK----HFQGILACRKKCQVALTKVDGE-SSRTHFVPQYFHYLQYCYFQENNLIEATNAAESYLLMIPSDPVMSKNLYWYQN--QPAVKGKAVGPRPRAKKYMKQFAIELNLAQ-ILDGYLXXXXXXXXXXXXXRMLDRIYRMVAEDLTTDERGIRGDAESIKGHQAVHRAYRNANRWQTHPKIKQSV-LLMEEEQLNGTNRVAFDNVSTQEECTEIMKLVKNLAQGGDGYKHSHRDADHPFTKKETFKGVTIKSAVDAAKEGKVSVNQTDLYVKLSERTRLLVQEYFDLPKRLNFAFTHLVCRHALADASNVGDHLSHPIHSDNCLVNEDGPGTCPEKSPAYTWRDYSALLYLNDDFEGGNFIFANHDGK-IQAQVRPKCGRMVAFRSKSIENLHGVLGVKSGTRCALPVWFTLSDERRHLE 2185
+D LY SG +Y + ++ AV E A+ +R +E++ +C C +L ++ C++ C+ + LG R R+++ V+ F+ + PY++LQ + K+ ++ KA+ AA+T F ANP + M++NIE + + L E PH+ Y G K Y DF+ I FE++L ++ E +C +CE +E + Y A L++ H+ +L C+ +C L G S +F+P ++ YLQ+ Y++ ++A A++YLL P D + N+ +Y++ ++ ++ R ++K+ +E L + +G + + D V + + + G + K + R R P + +++ + EQLNGT RV DNV ++E+C E+ + + GDGY R P T E F+G T+ A+ + EG+V + L+ +SE+ R +V+ YF L L F++TH+VCR AL+ + + LSHPIH+DNCL++ + C ++ PAYT+RDYSALLY+NDDFEGG FIF D K + A ++PKCGRM++F S EN HGV V G RCA+ +WFTL R LE
Sbjct: 44 FDLLYASGAAAYYSGDYERAVRDLEAALRSHRRLREIRTRCARHCAARHPLPPPPPGEGPGAELPLFRSLLGRARCYRSCETQRLGGPASRHRVSEDVRSDFQRRVPYNYLQRAYIKLNQLEKAVEAAHTFFVANPEHMEMQQNIENYRATAGVEALQLVDREAKPHMESYNAGVKHYEADDFEMAIRHFEQALREYFVEDTECRTLCEGPQRFEEYEYLGYKAGLYEAIADHYMQVLVCQHECVRELATRPGRLSPIENFLPLHYDYLQFAYYRVGEYVKALECAKAYLLCHPDDEDVLDNVDYYESLLDDSIDPASIEAREDLTMFVKRHKLESELIKSAAEGLGFSYTEPNYWIRYGGRQDE--NRVPSGVNVEGAEVHGFSMGKKLSPKIDRDLREGG-----PLLYENITFVYNSEQLNGTQRVLLDNVLSEEQCRELHSVASGIMLVGDGY----RGKTSPHTPNEKFEGATVLKALKSGYEGRVPLKSARLFYDISEKARRIVESYFMLNSTLYFSYTHMVCRTALSGQQDRRNDLSHPIHADNCLLDPEA-NECWKEPPAYTFRDYSALLYMNDDFEGGEFIFTEMDAKTVTASIKPKCGRMISFSSGG-ENPHGVKAVTKGKRCAVALWFTLDPLYRELE 679 The following BLAST results are available for this feature:
BLAST of TCONS_00070628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.