TCONS_00070612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070612
Unique NameTCONS_00070612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070612 ID=TCONS_00070612|Name=TCONS_00070612|organism=Clytia hemisphaerica|type=transcript|length=1684bp
tttaaaaattttccaatcaACATTACATTTGACATCAAAATAGAAGAAAG
GAATATTGGTAGTTGCAATATATCAGTGGTTAACTCAAATTCCCCAGTGG
AATTTTTGGATCAGGAGAATAATAATTTTACCTTTAAGCCAACAAGATCA
CCTTTCACTTGCACAAAATACACAACTGATATCAGCAATCTGGACAGTTT
AGTCAACCAGAAGGAAAATGGTATTTCCCAGGAAATACGAAATGAGAGTG
AGCAAGAAACTTGTGAGCTATTGAATTGTGGTGATCTTTCAGAAATGAGC
AGAGTGAAATTTTCTCAGAATTTGGAGGCAATGCAAGGTAAAAAGGATGA
TGATATGACTTCAATTACACTCAAAATCGAATTAGACGTAGATCTTTCAG
AGAACAATGTATTAAATGAACGTGACGATAATCTAAAATTTGTgtgcaaa
atttgtaaaaagttaTGTTTGATAGAGTTCTTAGATAAAAGTAATTCTGA
CAATTCATTGATATGCATCAAGTGTTTTGAAGATGTTAATCCTAAGAAAA
TTGACGCTGGTGGAAAGAAGGTTAATAAAACAAcaataaatgaaaagaaa
tatgcTTGCAAGGAATGTGGTAAGTTTTTTGTAGACAAACAAAACTGtga
aacacatcaaaactctCATAAAGGTTTGAAACCTTATGAATGTAAAATCT
GTGGGAAAcattttggaggaaaaaaaaatctttctagCCATCAGACAGTT
CATAAAGACTTAAAACCATTTAAATGCGAAGAGTGCGGTAAGAGCTTCTC
GCGTAGAGGTTCTTTGAAAAGTCACCTTGTAATTCACAAAGGAACTAAAC
CATTTGAATGCGAAGAATGTGGCAAAGTGTTTGCAAGGAACACTGGCCTC
AAAAAACACTTGGAAGTTCATGACAACACAACGTTTCAATGCGAGGAGTG
TGATAAATCCTTTACGTCCAGGGATGGTTATAACAAGCATAGGAAAATAC
ATATTGAAGGAGTAAAACCTCATCTATGTGAAGTATGTGGGAAGTCTTTT
TCTATAAAAAGCCGACTATCTGATCACCAGAATATTCACACAGGAAATAA
ACCTCACGATTGCAAGGTTTGTGGTAAATCCTTTgcagcaaaaaataatt
taacaacACATCGACAGATTCACAACACAAAATCATTTAAATGTCCAGAT
TGTAACAAATGCTTTATATCAAATAGAAAACTTACTCTCCATAAAAGCGT
ACATTTAATGGAAAAACCTTTCAAATGTCAGGAATGTGGTAAGAGTTACT
CACATCAATTTATGCTGGCAAAACATGAATCTGCTGTTCATAAACAAATT
AAACCTTTTAACTGTGAGGAGTGTGGAAAGTCATTTGCCAACAAGGGTAA
TTTAAATATGCACCTTGTTATACACACTGGAATCAAACCATTTGAATGCA
AGGAATGTGGTAAATCGTTTGCAAGGAAAGGTGACTTATCAGGTCATCAG
CGTTATGTTCATGGGCCAAAAACACCTTATCAATGTAAGGAATGCGGTAA
ATCTTTTGtcaaaaaagttcaatttgAACATCATCAAGAAGGTCTTCATA
AAAAAGACACTATTGAATCATGaaacttttttcagattttttatgcaaga
caatgttttcttttgaacTTACTGAAAATTCATA
Run BLAST on NCBI

transcript from alignment at scaffold_57:107240..108923+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070612 ID=TCONS_00070612|Name=TCONS_00070612|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at scaffold_57:107240..108923+ (Clytia hemisphaerica)
tttaaaaattttccaatcaACATTACATTTGACATCAAAATAGAAGAAAG
GAATATTGGTAGTTGCAATATATCAGTGGTTAACTCAAATTCCCCAGTGG
AATTTTTGGATCAGGAGAATAATAATTTTACCTTTAAGCCAACAAGATCA
CCTTTCACTTGCACAAAATACACAACTGATATCAGCAATCTGGACAGTTT
AGTCAACCAGAAGGAAAATGGTATTTCCCAGGAAATACGAAATGAGAGTG
AGCAAGAAACTTGTGAGCTATTGAATTGTGGTGATCTTTCAGAAATGAGC
AGAGTGAAATTTTCTCAGAATTTGGAGGCAATGCAAGGTAAAAAGGATGA
TGATATGACTTCAATTACACTCAAAATCGAATTAGACGTAGATCTTTCAG
AGAACAATGTATTAAATGAACGTGACGATAATCTAAAATTTGTgtgcaaa
atttgtaaaaagttaTGTTTGATAGAGTTCTTAGATAAAAGTAATTCTGA
CAATTCATTGATATGCATCAAGTGTTTTGAAGATGTTAATCCTAAGAAAA
TTGACGCTGGTGGAAAGAAGGTTAATAAAACAAcaataaatgaaaagaaa
tatgcTTGCAAGGAATGTGGTAAGTTTTTTGTAGACAAACAAAACTGtga
aacacatcaaaactctCATAAAGGTTTGAAACCTTATGAATGTAAAATCT
GTGGGAAAcattttggaggaaaaaaaaatctttctagCCATCAGACAGTT
CATAAAGACTTAAAACCATTTAAATGCGAAGAGTGCGGTAAGAGCTTCTC
GCGTAGAGGTTCTTTGAAAAGTCACCTTGTAATTCACAAAGGAACTAAAC
CATTTGAATGCGAAGAATGTGGCAAAGTGTTTGCAAGGAACACTGGCCTC
AAAAAACACTTGGAAGTTCATGACAACACAACGTTTCAATGCGAGGAGTG
TGATAAATCCTTTACGTCCAGGGATGGTTATAACAAGCATAGGAAAATAC
ATATTGAAGGAGTAAAACCTCATCTATGTGAAGTATGTGGGAAGTCTTTT
TCTATAAAAAGCCGACTATCTGATCACCAGAATATTCACACAGGAAATAA
ACCTCACGATTGCAAGGTTTGTGGTAAATCCTTTgcagcaaaaaataatt
taacaacACATCGACAGATTCACAACACAAAATCATTTAAATGTCCAGAT
TGTAACAAATGCTTTATATCAAATAGAAAACTTACTCTCCATAAAAGCGT
ACATTTAATGGAAAAACCTTTCAAATGTCAGGAATGTGGTAAGAGTTACT
CACATCAATTTATGCTGGCAAAACATGAATCTGCTGTTCATAAACAAATT
AAACCTTTTAACTGTGAGGAGTGTGGAAAGTCATTTGCCAACAAGGGTAA
TTTAAATATGCACCTTGTTATACACACTGGAATCAAACCATTTGAATGCA
AGGAATGTGGTAAATCGTTTGCAAGGAAAGGTGACTTATCAGGTCATCAG
CGTTATGTTCATGGGCCAAAAACACCTTATCAATGTAAGGAATGCGGTAA
ATCTTTTGtcaaaaaagttcaatttgAACATCATCAAGAAGGTCTTCATA
AAAAAGACACTATTGAATCATGaaacttttttcagattttttatgcaaga
caatgttttcttttgaacTTACTGAAAATTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043940XLOC_043940Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070612-exon-scaffold_57-1491911889:107240..108923TCONS_00070612-exon-scaffold_57-1491911889:107240..108923Clytia hemisphaericaexon
TCONS_00070612-exon-scaffold_57-1510915933:107240..108923TCONS_00070612-exon-scaffold_57-1510915933:107240..108923Clytia hemisphaericaexon
TCONS_00070612-exon-scaffold_57-1575043694:107240..108923TCONS_00070612-exon-scaffold_57-1575043694:107240..108923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_57supercontigscaffold_57:107240..108923 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.1737	14.4941	5.83244	4.5281	6.46425	4.65329	5.28447	4.60351	3.17377	2.10226	1.64253	1.49937	1.78996	1.62672	2.73533	2.3668	4.11771	3.89453	1.53941	1.08391	3.30582	2.94691	19.2212	17.4813	2.84377	3.14217	2.38579	1.58933	8.33643	11.1111
Blast
[Close]
BLAST of TCONS_00070612 vs. Swiss-Prot (Human)
Match: ZN345 (Zinc finger protein 345 OS=Homo sapiens GN=ZNF345 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 6.780e-93
Identity = 162/395 (41.01%), Postives = 229/395 (57.97%), Query Frame = 1 
Query:  493 NSDNSLI-CIKCFEDVNPKKIDAGGKKVNKTTINEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIHI---------------------------EGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPHDCKVCGKSFAAKNNLTTHRQIH-NTKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKTPYQCKECGKSFVKKVQFEHHQ 1587
            ++D  L+ C +C +D +   +    ++++     EK Y CKECGK F    N   HQ  H G KP+ECK CGK FG   NL+ HQ +H   KP++C+ECGK+FS    L  H +IH G KP+EC+ECGK F+  + L +H  +H     ++C +C K+F S     +HR+IH                             G KP++C  CGK+FS  S L+ HQ IHTG KP+ CK CGK+F + ++LT H++IH   K ++C +C K F S  KL  H+ +H  EKP++C+ECGK++S    L +H   +H   KP+ C+ECGK+F +   L  H +IHTG +P+ECKECGKSF+    L+ HQR +H  + PY+CKECGK+F        HQ
Sbjct:   56 HTDEKLLECKECGKDFSFVSVLVRHQRIH---TGEKPYECKECGKAFGSGANLAYHQRIHTGEKPFECKECGKAFGSGSNLTHHQRIHTGEKPYECKECGKAFSFGSGLIRHQIIHSGEKPYECKECGKSFSFESALIRHHRIHTGEKPYECIDCGKAFGSGSNLTQHRRIHTGEKPYECKACGMAFSSGSALTRHQRIHTGEKPYICNECGKAFSFGSALTRHQRIHTGEKPYVCKECGKAFNSGSDLTQHQRIHTGEKPYECKECEKAFRSGSKLIQHQRMHTGEKPYECKECGKTFSSGSDLTQHHR-IHTGEKPYECKECGKAFGSGSKLIQHQLIHTGERPYECKECGKSFSSGSALNRHQR-IHTGEKPYECKECGKAFYSGSSLTQHQ 445

HSP 2 Score: 283.878 bits (725), Expect = 4.914e-88
Identity = 166/459 (36.17%), Postives = 242/459 (52.72%), Query Frame = 1 
Query:  319 NLEAMQGKKDDDMTSITLKIELDVDLSENNVLNER--DDNLKFVCKICKK-----LCLIEFLDKSNSDNSLICIKCFEDVNPKKIDAGGKKVNKTTINEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPHDCKVCGKSFAAKNNLTTHRQIH-NTKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHE---------------------------SAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKTPYQCKECGKSFVKKVQFEHHQ 1587
              E  QG ++   + +    E   D+   ++ ++R   D     CK C K       L+        +    C +C +        A  ++++     EK + CKECGK F    N   HQ  H G KPYECK CGK F     L  HQ +H   KP++C+ECGKSFS   +L  H  IH G KP+EC +CGK F   + L +H  +H     ++C+ C  +F+S     +H++IH  G KP++C  CGK+FS  S L+ HQ IHTG KP+ CK CGK+F + ++LT H++IH   K ++C +C K F S  KL  H+ +H  EKP++C+ECGK++S    L +H                              +H   +P+ C+ECGKSF++   LN H  IHTG KP+ECKECGK+F     L+ HQR +H  +  Y+CK CGK++ +  +F+ H+
Sbjct:   23 QFERKQGSQEGHFSEMIFTPE---DMPTFSIQHQRIHTDEKLLECKECGKDFSFVSVLVRHQRIHTGEKPYECKECGKAFGSGANLAYHQRIH---TGEKPFECKECGKAFGSGSNLTHHQRIHTGEKPYECKECGKAFSFGSGLIRHQIIHSGEKPYECKECGKSFSFESALIRHHRIHTGEKPYECIDCGKAFGSGSNLTQHRRIHTGEKPYECKACGMAFSSGSALTRHQRIHT-GEKPYICNECGKAFSFGSALTRHQRIHTGEKPYVCKECGKAFNSGSDLTQHQRIHTGEKPYECKECEKAFRSGSKLIQHQRMHTGEKPYECKECGKTFSSGSDLTQHHRIHTGEKPYECKECGKAFGSGSKLIQHQLIHTGERPYECKECGKSFSSGSALNRHQRIHTGEKPYECKECGKAFYSGSSLTQHQR-IHTGEKLYECKNCGKAYGRDSEFQQHK 473

HSP 3 Score: 122.479 bits (306), Expect = 8.520e-30
Identity = 71/196 (36.22%), Postives = 98/196 (50.00%), Query Frame = 1 
Query:  439 FVCKICKKLC-----LIEFLDKSNSDNSLICIKCFEDVNPKKIDAGGKKVN--KTTINEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLSSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVFARNTGLKKHLEVHDNT-TFQCEECDKSFTSRDGYNKHRKIH 1002
            +VCK C K       L +       +    C +C      K   +G K +   +    EK Y CKECGK F    +   H   H G KPYECK CGK FG    L  HQ +H   +P++C+ECGKSFS   +L  H  IH G KP+EC+ECGK F   + L +H  +H     ++C+ C K++     + +H+K H
Sbjct:  286 YVCKECGKAFNSGSDLTQHQRIHTGEKPYECKEC-----EKAFRSGSKLIQHQRMHTGEKPYECKECGKTFSSGSDLTQHHRIHTGEKPYECKECGKAFGSGSKLIQHQLIHTGERPYECKECGKSFSSGSALNRHQRIHTGEKPYECKECGKAFYSGSSLTQHQRIHTGEKLYECKNCGKAYGRDSEFQQHKKSH 476
The following BLAST results are available for this feature:
BLAST of TCONS_00070612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3456.780e-9341.01Zinc finger protein 345 OS=Homo sapiens GN=ZNF345 ... [more]
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