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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070611 ID=TCONS_00070611|Name=TCONS_00070611|organism=Clytia hemisphaerica|type=transcript|length=1804bpRun BLAST on NCBI protein sequence of TCONS_00070611-protein >TCONS_00070611-protein ID=TCONS_00070611-protein|Name=TCONS_00070611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp TRDKESSGKFDFPITIKFDIKIEERNIGSCNISVVNSNSPVEFLDQENNNRun BLAST on NCBI transcript from alignment at scaffold_57:98369..109017+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070611 ID=TCONS_00070611|Name=TCONS_00070611|organism=Clytia hemisphaerica|type=transcript|length=10649bp|location=Sequence derived from alignment at scaffold_57:98369..109017+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:98369..109017+ >TCONS_00070611 ID=TCONS_00070611|Name=TCONS_00070611|organism=Clytia hemisphaerica|type=CDS|length=4941bp|location=Sequence derived from alignment at scaffold_57:98369..109017+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070611 vs. Swiss-Prot (Human)
Match: ZN420 (Zinc finger protein 420 OS=Homo sapiens GN=ZNF420 PE=1 SV=1) HSP 1 Score: 298.13 bits (762), Expect = 8.658e-91 Identity = 156/362 (43.09%), Postives = 213/362 (58.84%), Query Frame = 3
Query: 615 NEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLFSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVYARKGELKKHLEVHDNT-TFQCEECDKSFTSRHGYNKHRKIHI---------------------------EGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPYDCKVCGKSFANKNNLKAHRQIHN-TKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKTPYQCKECGKSFVKKVQFEHHQ 1613
EK Y CKECGK F + HQ+ H G KPYECK CGK F L HQ +H KP+ C+ECGK+F++ L H IH G KP++CEECGK + R +L +H +VH ++C+EC K+FT H+++H G KP+ C+ CGK+F S+LS HQ IH G KPY+CK CG++F + L H++IH K +KC +C K FI +LT H+ +H EKP++C+ECGK +SH L +H+ +H KP+ C+ECGK+F L H IHTG KP+ECKECGK+F+R +L+ H+R +H + PY+CKECGKSF++ Q HQ
Sbjct: 135 TEKPYKCKECGKAFRRASHLTQHQSIHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHRIHTGEKPYKCEECGKAFIRSSQLTRHQKVHTGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQR-IHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHER-IHTGEKPYECKECGKSFIRGSQLTQHQ 494 HSP 2 Score: 294.664 bits (753), Expect = 1.563e-89 Identity = 148/336 (44.05%), Postives = 204/336 (60.71%), Query Frame = 3
Query: 612 INEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLFSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVYARKGELKKHLEVHDNT-TFQCEECDKSFTSRHGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPYDCKVCGKSFANKNNLKAHRQIHN-TKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKTPYQCKECGKSFVKKVQFEHHQ 1613
EK Y CKECGK F+ HQ H G KPYECK CG+ F L HQ +H KP+KCEECGK+F R L H IH KP+EC+ECGK+++ +L +H +H +QC+EC K+F +H++IH G KP+ C+ CGK+FS S L+ H+ IHTG KPY+CK CGKSF + L H++IH K ++C +C F + L+ H+ +H EKP+ C ECGK+++ +L +H+ +H KP+ C+ECGK+F L H IHTG KP+ECKECGK+F+ L+ HQR +H + PY+C+EC K+F + HQ
Sbjct: 302 TGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHT-GEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQR-IHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQR-IHTGEKPYECRECRKAFTQSSHLSRHQ 634 HSP 3 Score: 281.182 bits (718), Expect = 1.886e-84 Identity = 145/326 (44.48%), Postives = 198/326 (60.74%), Query Frame = 3
Query: 612 INEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLFSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVYARKGELKKHLEVHDNT-TFQCEECDKSFTSRHGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPYDCKVCGKSFANKNNLKAHRQIHN-TKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKTPYQCKECGKSF 1583
EK Y C+ECGK F+ HQ H KPYECK CGK F L HQ +H KP++C+ECGK+F+R L H IH G KP+EC+ECGK ++R EL +H +H ++C+EC KSF +H++IH G KP+ C+ C +F+ S LS HQ +HTG KPY C CGK+FA L H++IH K ++C +C K FI +LT H+ +H EKP++C+ECGK++SH L H+ +H KP+ C EC K+F +L+ H IHTG KP++CKECGK+F R L+ HQR +H + ++ KECG F
Sbjct: 358 TGEKPYKCEECGKAFIRGSQLTQHQRIHTNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHT-GEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQR-IHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQR-IHISEKSFEYKECGIDF 680 HSP 4 Score: 278.1 bits (710), Expect = 2.254e-83 Identity = 148/340 (43.53%), Postives = 200/340 (58.82%), Query Frame = 3
Query: 600 NKTTINEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLFSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVYARKGELKKHLEVHDNT-TFQCEECDKSFTSRHGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPYDCKVCGKSFANKNNLKAHRQIHN-TKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKTPYQCKECGKSFVKKVQFEHHQ 1613
K EK Y CKECGK F HQ H G K YECK C K F L H+ +H KP++C+ECGK+F L H IH G KP+EC+ECG+ + R L +H +H ++CEEC K+F +H++IH KP+ C+ CGK FS S+L+ HQ IHTG KPY CK CGK+F + L H++IH K ++C +C K F +LT H+ +H EKP++C+ECGKS+ L +H+ +H KP+ C+EC +F +L+ H +HTG KP+ C ECGK+FAR L HQR +H + PYQCKECGK+F++ Q HQ
Sbjct: 242 QKVHTGEKPYECKECGKAFTQNSQLTLHQRLHTGEKLYECKECRKVFTQLSQLILHKRIHTGEKPYECKECGKAFICGSQLSQHQKIHNGEKPYECKECGRAFIRGSLLMQHQRIHTGEKPYKCEECGKAFIRGSQLTQHQRIHT-NEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQR-IHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQR-IHTGEKPYQCKECGKAFIRGSQLTQHQ 578 HSP 5 Score: 256.529 bits (654), Expect = 2.242e-75 Identity = 130/298 (43.62%), Postives = 179/298 (60.07%), Query Frame = 3
Query: 612 INEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLFSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVYARKGELKKHLEVHDNT-TFQCEECDKSFTSRHGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPYDCKVCGKSFANKNNLKAHRQIHN-TKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFA 1499
NEK Y CKECGK F HQ H G KPY+CK CGK F L HQ +H KP++C+ECGK+FSR L H IH G KP+EC+ECGK + R +L +H +H ++C+EC +FT ++H+++H G KP++C CGK+F+ L HQ IHTG KPY CK CGK+F + L H++IH K ++C +C K F +LTLH+ +H EKP++C+EC K+++ L++H+ +H KP+ C+ECGK+F L H IH K FE KECG F+
Sbjct: 386 TNEKPYECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIHTGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHT-GEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHTGEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQR-IHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFS 681 HSP 6 Score: 199.904 bits (507), Expect = 4.800e-55 Identity = 111/296 (37.50%), Postives = 163/296 (55.07%), Query Frame = 3
Query: 465 FVCKICKKLC-----LIEFLDKSNSDNSLICIKCFEDVNPKKIDAGGKKVNKTTINEKKYACKECGKFFVDKQNCETHQNSHKGLKPYECKICGKHFGGKKNLFSHQTVHKDLKPFKCEECGKSFSRRGSLKSHLVIHKGTKPFECEECGKVYARKGELKKHLEVHDNT-TFQCEECDKSFTSRHGYNKHRKIHIEGVKPHLCEVCGKSFSIKSRLSDHQNIHTGNKPYDCKVCGKSFANKNNLKAHRQIHN-TKSFKCPDCNKCFISNRKLTLHKSVHLMEKPFKCQECGKSYSH 1331
+ CK C K+ L + + C +C + N + ++++ EK Y CKECGK F H+ H G KPYECK CGK F L HQ +H KP++C+EC +F++ L H +H G KP+ C ECGK +AR L +H +H +QC+EC K+F +H++IH G KP+ C+ CGK+FS S+L+ HQ IHTG KPY+C+ C K+F ++L H++IH K ++C +C K F +LT H+ +H+ EK F+ +ECG +SH
Sbjct: 391 YECKECGKMFSHGSQLTQHQRIHTGEKPYQCKECGKAFNRGSLLTRHQRIH---TGEKPYECKECGKTFSRGSELTQHERIHTGEKPYECKECGKSFIRGSQLTQHQRIHTGEKPYECKECRMAFTQSSHLSQHQRLHTGEKPYVCNECGKAFARGLLLIQHQRIHTGEKPYQCKECGKAFIRGSQLTQHQRIHT-GEKPYECKECGKAFSHGSQLTLHQRIHTGEKPYECRECRKAFTQSSHLSRHQRIHTGEKPYQCKECGKAFTRGSQLTQHQRIHISEKSFEYKECGIDFSH 682 HSP 7 Score: 113.235 bits (282), Expect = 4.663e-26 Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = 3
Query: 1239 FISNRKLTLHKSVHLMEKPFKCQECGKSYSHQFMLAKHESAVHKQIKPFNCEECGKSFANKGNLNMHLVIHTGIKPFECKECGKSFARKGDLSGHQRYVHGPKTPYQCKECGKSFVKKVQFEHHQ 1613
F + L+ H H EKP+KC+ECGK++ L +H+S +H KP+ C++CGK+F+ L++H +HTG KP+ CKECGK+F + L H R +H + PY+C+ECGK+F++ Q HQ
Sbjct: 120 FNQHTYLSQHSRCHSTEKPYKCKECGKAFRRASHLTQHQS-IHTGEKPYECKQCGKAFSRDSQLSLHQRLHTGEKPYACKECGKAFTQSSQLILHHR-IHTGEKPYKCEECGKAFIRSSQLTRHQ 242 The following BLAST results are available for this feature:
BLAST of TCONS_00070611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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