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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070607 ID=TCONS_00070607|Name=TCONS_00070607|organism=Clytia hemisphaerica|type=transcript|length=1680bpRun BLAST on NCBI protein sequence of TCONS_00070607-protein >TCONS_00070607-protein ID=TCONS_00070607-protein|Name=TCONS_00070607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp MLENDAVVISEENNAVTISEESIYQPSRLSENYTESSTRLRSAENKNNDLRun BLAST on NCBI transcript from alignment at scaffold_57:86484..95528+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070607 ID=TCONS_00070607|Name=TCONS_00070607|organism=Clytia hemisphaerica|type=transcript|length=9045bp|location=Sequence derived from alignment at scaffold_57:86484..95528+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_57:86484..95528+ >TCONS_00070607 ID=TCONS_00070607|Name=TCONS_00070607|organism=Clytia hemisphaerica|type=CDS|length=828bp|location=Sequence derived from alignment at scaffold_57:86484..95528+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070607 vs. Swiss-Prot (Human)
Match: ZN568 (Zinc finger protein 568 OS=Homo sapiens GN=ZNF568 PE=2 SV=2) HSP 1 Score: 145.206 bits (365), Expect = 6.149e-37 Identity = 81/181 (44.75%), Postives = 108/181 (59.67%), Query Frame = 3
Query: 456 LKSQANEKIKPAYLCKTCLKYYTSKSRLDRHIQTHT--KPYQCKDCGKFFSQQKHLKIHHDNIHKGIKYFKCTECDKGFVTKLRLDAHMRSHQGIKPFKCQVCGLCFSWKRSLVTHEKTHQGDDPFICGECGKEFKERKEL----KVHTGEFHKGGKPFYCCKCNRNFSRRSHLTRHYASH 980
++S EK Y+C C K ++ S L H++ HT KPY+CK+CGK FS++++L I H IH G K ++C+EC K F+ L H R H G KP+ C VCG FS K +L HEK H G+ P+ C +CGK F +R+ L K+HTGE KPF C +C + FSR S LT H SH
Sbjct: 409 MRSHTGEK---PYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENL-ITHQKIHTGEKPYECSECGKAFIQMSNLIRHQRIHTGEKPYACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNLLEHEKIHTGE-----KPFKCNECGKAFSRISSLTLHVRSH 580 HSP 2 Score: 138.272 bits (347), Expect = 1.389e-34 Identity = 73/168 (43.45%), Postives = 98/168 (58.33%), Query Frame = 3
Query: 483 KPAYLCKTCLKYYTSKSRLDRHIQTHT--KPYQCKDCGKFFSQQKHLKIHHDNIHKGIKYFKCTECDKGFVTKLRLDAHMRSHQGIKPFKCQVCGLCFSWKRSLVTHEKTHQGDDPFICGECGKEFKERKELKVHTGEFHKGGKPFYCCKCNRNFSRRSHLTRHYASH 980
KP Y CK C K ++ KS L H + HT KPY+CK+CGK FSQ+++L I H+ IH G K + C EC + F + HMRSH G KP+KC CG FS + H ++H G+ P++C ECGK F + L VH H KP+ C +C + FSR+ +L H H
Sbjct: 304 KP-YACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNL-IEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRSHTGEKPYVCSECGKAFSQSSSLTVHMRN-HTAEKPYECKECGKAFSRKENLITHQKIH 468 HSP 3 Score: 132.88 bits (333), Expect = 8.432e-33 Identity = 79/188 (42.02%), Postives = 107/188 (56.91%), Query Frame = 3
Query: 465 QANEKIKPAYLCKT----------CLKYYTSKSRLDRHIQTHT--KPYQCKDCGKFFSQQKHLKIHHDNIHKGIKYFKCTECDKGFVTKLRLDAHMRSHQGIKPFKCQVCGLCFSWKRSLVTHEKTHQGDDPFICGECGKEFKERKEL----KVHTGEFHKGGKPFYCCKCNRNFSRRSHLTRHYASH 980
Q+NE KP Y C + C + ++ K L RH + H KPY+CK+CGK FS++++L I H IH G K +KC EC K F+ L H R H G KP+ C+ C FS K +L+ HE+ H G+ P+ C ECGK F +++ L K+HTGE KP+ C +C R FSR S +T H SH
Sbjct: 203 QSNEFGKPFYHCASYVVTPFKCNQCGQDFSHKFDLIRHERIHAGEKPYECKECGKAFSRKENL-ITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNLIEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGE-----KPYACNECGRAFSRMSSVTLHMRSH 384 HSP 4 Score: 127.487 bits (319), Expect = 5.668e-31 Identity = 70/168 (41.67%), Postives = 96/168 (57.14%), Query Frame = 3
Query: 483 KPAYLCKTCLKYYTSKSRLDRHIQTHT--KPYQCKDCGKFFSQQKHLKIHHDNIHKGIKYFKCTECDKGFVTKLRLDAHMRSHQGIKPFKCQVCGLCFSWKRSLVTHEKTHQGDDPFICGECGKEFKERKELKVHTGEFHKGGKPFYCCKCNRNFSRRSHLTRHYASH 980
KP Y C C + ++ S + H+++HT KPY+C CGK FSQ IH + H G K + C+EC K F L HMR+H KP++C+ CG FS K +L+TH+K H G+ P+ C ECGK F + L H H G KP+ C C + FS++S+LT H H
Sbjct: 360 KP-YACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRS-HTGEKPYVCSECGKAFSQSSSLTVHMRNHTAEKPYECKECGKAFSRKENLITHQKIHTGEKPYECSECGKAFIQMSNLIRHQ-RIHTGEKPYACTVCGKAFSQKSNLTEHEKIH 524 HSP 5 Score: 124.79 bits (312), Expect = 4.890e-30 Identity = 72/182 (39.56%), Postives = 96/182 (52.75%), Query Frame = 3
Query: 441 RKSQTLKSQANEKIKPAYLCKTCLKYYTSKSRLDRHIQTHT--KPYQCKDCGKFFSQQKHLKIHHDNIHKGIKYFKCTECDKGFVTKLRLDAHMRSHQGIKPFKCQVCGLCFSWKRSLVTHEKTHQGDDPFICGECGKEFKERKELKVHTGEFHKGGKPFYCCKCNRNFSRRSHLTRHYASH 980
RK + Q + Y C C K + S L RH + HT KPY CKDC K FSQ+ +L I H+ IH G K ++C EC K F K L H + H G KP+ C CG FS S+ H ++H G+ P+ C +CGK F + +H H G KP+ C +C + FS+ S LT H +H
Sbjct: 261 RKENLITHQKIHTGEKPYKCNECGKAFIQMSNLIRHHRIHTGEKPYACKDCWKAFSQKSNL-IEHERIHTGEKPYECKECGKSFSQKQNLIEHEKIHTGEKPYACNECGRAFSRMSSVTLHMRSHTGEKPYKCNKCGKAFSQCSVFIIHMRS-HTGEKPYVCSECGKAFSQSSSLTVHMRNH 440 HSP 6 Score: 122.094 bits (305), Expect = 3.727e-29 Identity = 67/145 (46.21%), Postives = 85/145 (58.62%), Query Frame = 3
Query: 483 KPAYLCKTCLKYYTSKSRLDRHIQTHT--KPYQCKDCGKFFSQQKHLKIHHDNIHKGIKYFKCTECDKGFVTKLRLDAHMRSHQGIKPFKCQVCGLCFSWKRSLVTHEKTHQGDDPFICGECGKEFKERKELKV----HTGEFHK 899
KP Y C C K ++ KS L H + HT KPY C CGK FSQ+++L + H+ IH G K FKC EC K F L H+RSH G KP++C CG FS L+ H ++H G+ PF C ECGK F +R L + HTGE H+
Sbjct: 500 KP-YACTVCGKAFSQKSNLTEHEKIHTGEKPYHCNQCGKAFSQRQNL-LEHEKIHTGEKPFKCNECGKAFSRISSLTLHVRSHTGEKPYECNKCGKAFSQCSLLIIHMRSHTGEKPFECNECGKAFSQRASLSIHKRGHTGERHQ 642 The following BLAST results are available for this feature:
BLAST of TCONS_00070607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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