Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070604 ID=TCONS_00070604|Name=TCONS_00070604|organism=Clytia hemisphaerica|type=transcript|length=2842bpRun BLAST on NCBI transcript from alignment at scaffold_57:50337..53178+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070604 ID=TCONS_00070604|Name=TCONS_00070604|organism=Clytia hemisphaerica|type=transcript|length=2842bp|location=Sequence derived from alignment at scaffold_57:50337..53178+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00070604 vs. Swiss-Prot (Human)
Match: ZN197 (Zinc finger protein 197 OS=Homo sapiens GN=ZNF197 PE=2 SV=1) HSP 1 Score: 394.43 bits (1012), Expect = 4.496e-120 Identity = 243/720 (33.75%), Postives = 371/720 (51.53%), Query Frame = 3 Query: 528 HQCQDCGEIFPTMLGLVEHYNAFHEGLKPFKCDLCGKDFTNKYSLLNHLNLHLDIRPFECEQCGRCYSLKTNLIKHVNTIHKRIQRFQCEQCGKGFYQKWQLQKHVDINHKGIKAFKCTECGKSFGLKRSLVAHQKTHTGIKPFECQVCGKSFYRRYCLDIHSKIHEETRELFQCNECDQTFTLRSNLIAHQKRHTGIKPFQCQVCVKSFFRKSCLLKHQKTHEENQEPAKAFQCTECSKSYASKKALVLHQKTHETRIRPYKCNVCSKTFLRNTHFQDHQKIHLENREQFQCSECEKSFLSKSSLLAHQRKSHEDAQLLNEASDQAEISIGDDGIINDEVSVIMEVQNYXXXXXXXXXXXXXXXXXXXXXXXXKAPSFECTECGKSFSHKRSLVSHQKKHTGNRPFQCEICSKSFFRGYDLQIHMKVHSEARERFQCSECDKSFSSKGNLLAHQRKPHKERSNGLDESMNEDQSLECTECGESFTSKKTLASHQKIHNGIKPFKCDICDKSFLRKSSLKTHQEIHSQTRERLECQDCGESFTSKKTLASHQKIHSGVKPFKCDICDKSFLRKSSLKTHQEIHLETRERFECQDCDKTFTLKKNLLVHCKKYHNDLSHEEIENSDEDENQEETTGSTTQNKSFECTDCGKSYSIKKSLYNHQRTHTSIKPFQCEVCSKSFFRMYELNVHREVHSENRERFQCQECDKSFSNKSNLAAHQR 2687 ++C C + F + L+ H H G KP KC CGK F + SLL HL H +P++C +CG+ +S L+ H IH + ++C++CGKGFY+ L H+ H G + +KC ECGK F L+ HQ+ H G +P++C C K+F + L +H +IH + ++C+EC +TF + LI HQ+ H+ P++C+ C K F R LL HQ+ H E K F C +C K ++SK + H++ H +R +PYKC C K F ++ + DHQ++H + ++C+EC K F+ K SL+ HQR + L E D ++ + +I+ E +EC ECGK+F +S + HQK HT + ++CE C K+F L +H ++H+ + F+CSEC ++FSS NL+ H+R E+ EC ECG+ F KK+L HQ+IH K +KC+ C K F +S+L HQ IH+ + C +CG+ FT + L HQ+IHSG K ++C +C K +L HQ IH + ++C +C K F+ KNL+VH + + T K +EC C KS++ K++L HQR HT KP+ C CSK F + L VH+++H++ + +C +K FS SNL Q+ Sbjct: 370 YKCDMCCKHFNKISHLINH-RRIHTGEKPHKCKECGKGFIQRSSLLMHLRNHSGEKPYKCNECGKAFSQSAYLLNH-QRIHTGEKPYKCKECGKGFYRHSGLIIHLR-RHSGERPYKCNECGKVFSQNAYLIDHQRLHKGEEPYKCNKCQKAFILKKSLILHQRIHSGEKP-YKCDECGKTFAQTTYLIDHQRLHSAENPYKCKECGKVFIRSKSLLLHQRVHTEK----KTFGCKKCGKIFSSKSNFIDHKRMH-SREKPYKCTECGKAFTQSAYLFDHQRLH-NGEKPYECNECGKVFILKKSLILHQR--FHTGENLYECKDCGKVFGSNRNLIDHE------------------------------RLHNGEKPYECRECGKTFIMSKSFMVHQKLHTQEKAYKCEDCGKAFSYNSSLLVHRRIHT-GEKPFECSECGRAFSSNRNLIEHKRIHSGEK------------PYECDECGKCFILKKSLIGHQRIHTREKSYKCNDCGKVFSYRSNLIAHQRIHTGEKP-YACSECGKGFTYNRNLIEHQRIHSGEKTYECHVCRKVLTSSRNLMVHQRIHTGEKP-YKCNECGKDFSQNKNLVVHQRMH-------------------------TGEKPYECDKCRKSFTSKRNLVGHQRIHTGEKPYGCNDCSKVFRQRKNLTVHQKIHTDEKP-CECDVSEKEFSQTSNLHLQQK 1006 HSP 2 Score: 380.563 bits (976), Expect = 5.341e-115 Identity = 230/699 (32.90%), Postives = 367/699 (52.50%), Query Frame = 3 Query: 600 EGLKPFKCDLCGKDFTNKYSLLNHLNLHLDIRPFECEQCGRCYSLKTNLIKHVNTIHKRIQRFQCEQCGKGFYQKWQLQKHVDINHKGIKAFKCTECGKSFGLKRSLVAHQKTHTGIKPFECQVCGKSFYRRYCLDIHSKIHEETRELFQCNECDQTFTLRSNLIAHQKRHTGIKPFQCQVCVKSFFRKSCLLKHQKTHEENQEPAKAFQCTECSKSYASKKALVLHQKTHETRIRPYKCNVCSKTFLRNTHFQDHQKIHLENREQ-FQCSECEKSFLSKSSLLAHQRKSHEDAQLLNEASDQAEIS-IGDDGIINDEVSVIMEVQNYXXXXXXXXXXXXXXXXXXXXXXXXKAPSFECTECGKSFSHKRSLVSHQKKHTGNRPFQCEICSKSFFRGYDLQIHMKVHSEARERFQCSECDKSFSSKGNLLAHQRKPHKERSNGLDESMNEDQSLECTECGESFTSKKTLASHQKIHNGIKPFKCDICDKSFLRKSSLKTHQEIHSQTRER-LECQDCGESFTSKKTLASHQKIHSGVKPFKCDICDKSFLRKSSLKTHQEIHLETRERFECQDCDKTFTLKKNLLVHCKKYHNDLSHEEIENSDEDENQEETTGSTTQNKSFECTDCGKSYSIKKSLYNHQRTHTSIKPFQCEVCSKSFFRMYELNVHREVHSENRERFQCQECDKSFSNKSNLAAHQR 2687 EG K +KCD+C K F L+NH +H +P +C++CG+ + +++L+ H+ H + ++C +CGK F Q L H I H G K +KC ECGK F L+ H + H+G +P++C CGK F + L H ++H+ E ++CN+C + F L+ +LI HQ+ H+G KP++C C K+F + + L+ HQ+ H ++C EC K + K+L+LHQ+ H T + + C C K F ++F DH+++H +RE+ ++C+EC K+F + L H Q L+ E + G I+ S+I+ + + +EC +CGK F R+L+ H++ H G +P++C C K+F +H K+H++ + ++C +C K+FS +LL H+R ++ EC+ECG +F+S + L H++IH+G KP++CD C K F+ K SL HQ IH TRE+ +C DCG+ F+ + L +HQ+IH+G KP+ C C K F +L HQ IH + +EC C K T +NL+VH ++ H T K ++C +CGK +S K+L HQR HT KP++C+ C KSF L H+ +H+ + + C +C K F + NL HQ+ Sbjct: 365 EGKKFYKCDMCCKHFNKISHLINHRRIHTGEKPHKCKECGKGFIQRSSLLMHLRN-HSGEKPYKCNECGKAFSQSAYLLNHQRI-HTGEKPYKCKECGKGFYRHSGLIIHLRRHSGERPYKCNECGKVFSQNAYLIDHQRLHK-GEEPYKCNKCQKAFILKKSLILHQRIHSGEKPYKCDECGKTFAQTTYLIDHQRLHSAEN----PYKCKECGKVFIRSKSLLLHQRVH-TEKKTFGCKKCGKIFSSKSNFIDHKRMH--SREKPYKCTECGKAFTQSAYLFDH--------QRLHNGEKPYECNECGKVFILKK--SLILHQRFHTGENL-----------------------YECKDCGKVFGSNRNLIDHERLHNGEKPYECRECGKTFIMSKSFMVHQKLHTQEKA-YKCEDCGKAFSYNSSLLVHRR------------IHTGEKPFECSECGRAFSSNRNLIEHKRIHSGEKPYECDECGKCFILKKSLIGHQRIH--TREKSYKCNDCGKVFSYRSNLIAHQRIHTGEKPYACSECGKGFTYNRNLIEHQRIH-SGEKTYECHVCRKVLTSSRNLMVH-QRIH------------------------TGEKPYKCNECGKDFSQNKNLVVHQRMHTGEKPYECDKCRKSFTSKRNLVGHQRIHTGEKP-YGCNDCSKVFRQRKNLTVHQK 978 HSP 3 Score: 351.288 bits (900), Expect = 3.178e-104 Identity = 217/666 (32.58%), Postives = 338/666 (50.75%), Query Frame = 3 Query: 528 HQCQDCGEIFPTMLGLVEHYNAFHEGLKPFKCDLCGKDFTNKYSLLNHLNLHLDIRPFECEQCGRCYSLKTNLIKHVNTIHKRIQRFQCEQCGKGFYQKWQLQKHVDINHKGIKAFKCTECGKSFGLKRSLVAHQKTHTGIKPFECQVCGKSFYRRYCLDIHSKIHEETRELFQCNECDQTFTLRSNLIAHQKRHTGIKPFQCQVCVKSFFRKSCLLKHQKTHEENQEPAKAFQCTECSKSYASKKALVLHQKTHETRIRPYKCNVCSKTFLRNTHFQDHQKIHLENREQFQCSECEKSFLSKSSLLAHQRKSHEDAQLLNEASDQAEISIGDDGIINDEVSVIMEVQNYXXXXXXXXXXXXXXXXXXXXXXXXKAPSFECTECGKSFSHKRSLVSHQKKHTGNRPFQCEICSKSFFRGYDLQIHMKVHSEARERFQCSECDKSFSSKGNLLAHQRKPHKERSNGLDESMNEDQSLECTECGESFTSKKTLASHQKIHNGIKPFKCDICDKSFLRKSSLKTHQEIHSQTRERLECQDCGESFTSKKTLASHQKIHSGVKPFKCDICDKSFLRKSSLKTHQEIHLETRERFECQDCDKTFTLKKNLLVHCKKYHNDLSHEEIENSDEDENQEETTGSTTQNKSFECTDCGKSYSIKKSLYNHQRTHT 2525 ++C +CG+ F L+ H H G KP+KC CGK F L+ HL H RP++C +CG+ +S LI H +HK + ++C +C K F K L H I H G K +KC ECGK+F L+ HQ+ H+ P++C+ CGK F R L +H ++H E ++ F C +C + F+ +SN I H++ H+ KP++C C K+F + + L HQ+ H N E K ++C EC K + KK+L+LHQ+ H T Y+C C K F N + DH+++H + ++C EC K+F+ S + HQ+ ++ E +A S +++ + FEC+ECG++FS R+L+ H++ H+G +P++C+ C K F L H ++H+ + ++C++C K FS + NL+AHQR ++ C+ECG+ FT + L HQ+IH+G K ++C +C K +L HQ IH+ + +C +CG+ F+ K L HQ++H+G KP++CD C KSF K +L HQ IH + + C DC K F +KNL VH +K H D K EC K +S +L+ Q+ HT Sbjct: 426 YKCNECGKAFSQSAYLLNH-QRIHTGEKPYKCKECGKGFYRHSGLIIHLRRHSGERPYKCNECGKVFSQNAYLIDH-QRLHKGEEPYKCNKCQKAFILKKSLILHQRI-HSGEKPYKCDECGKTFAQTTYLIDHQRLHSAENPYKCKECGKVFIRSKSLLLHQRVHTE-KKTFGCKKCGKIFSSKSNFIDHKRMHSREKPYKCTECGKAFTQSAYLFDHQRLH--NGE--KPYECNECGKVFILKKSLILHQRFH-TGENLYECKDCGKVFGSNRNLIDHERLH-NGEKPYECRECGKTFIMSKSFMVHQKLHTQEKAYKCEDCGKA-FSYNSSLLVHRRIHT-------------------------------GEKPFECSECGRAFSSNRNLIEHKRIHSGEKPYECDECGKCFILKKSLIGHQRIHTREKS-YKCNDCGKVFSYRSNLIAHQR------------IHTGEKPYACSECGKGFTYNRNLIEHQRIHSGEKTYECHVCRKVLTSSRNLMVHQRIHTGEKP-YKCNECGKDFSQNKNLVVHQRMHTGEKPYECDKCRKSFTSKRNLVGHQRIHTGEKP-YGCNDCSKVFRQRKNLTVH-QKIHTD------------------------EKPCECDVSEKEFSQTSNLHLQQKIHT 1009 HSP 4 Score: 283.493 bits (724), Expect = 2.381e-80 Identity = 185/600 (30.83%), Postives = 298/600 (49.67%), Query Frame = 3 Query: 1014 SKIHEETRELFQCNECDQTFTLRSNLIAHQKRHTGIKPFQCQVCVKSFFRKSCLLKHQKTHEENQEP-------------------------AKAFQCTECSKSYASKKALVLHQKTHETRIRPYKCNVCSKTFLRNTHFQDHQKIHLENREQFQCSECEKSFLSKSSLLAHQRKSHEDAQLLNEASDQAEISIGDDGIINDEVSVIMEVQNYXXXXXXXXXXXXXXXXXXXXXXXXKAPSFECTECGKSFSHKRSLVSHQKKHTGNRPFQCEICSKSFFRGYDLQIHMKVHSEARERFQCSECDKSFSSKGNLLAHQR--------------KPHKERSNGLDESM--NEDQSLECTECGESFTSKKTLASHQKIHNGIKPFKCDICDKSFLRKSSLKTHQEIHSQTRERLECQDCGESFTSKKTLASHQKIHSGVKPFKCDICDKSFLRKSSLKTHQEIHLETRER-FECQDCDKTFTLKKNLLVHCKKYHNDLSHEEIENSDEDENQEETTGSTTQNKSFECTDCGKSYSIKKSLYNHQRTHTSIKPFQCEVCSKSFFRMYELNVHREVHSENRERFQCQECDKSFSNKSNLAAHQR 2687 S I E ++ ++C+ C + F S+LI H++ HTG KP +C+ C K F ++S LL H + H ++P K ++C EC K + L++H + H RPYKCN C K F +N + DHQ++H + E ++C++C+K+F+ K SL+ HQR + D+ + + D + +N + + + + + +F C +CGK FS K + + H++ H+ +P++C C K+F + L H ++H+ + ++C+EC K F K +L+ HQR K N +D N ++ EC ECG++F K+ HQK+H K +KC+ C K+F SSL H+ IH+ + EC +CG +F+S + L H++IHSG KP++CD C K F+ K SL HQ IH TRE+ ++C DC K F+ + NL+ H ++ H T K + C++CGK ++ ++L HQR H+ K ++C VC K L VH+ +H+ + ++C EC K FS NL HQR Sbjct: 360 SLIGTEGKKFYKCDMCCKHFNKISHLINHRRIHTGEKPHKCKECGKGFIQRSSLLMHLRNH-SGEKPYKCNECGKAFSQSAYLLNHQRIHTGEKPYKCKECGKGFYRHSGLIIHLRRHSGE-RPYKCNECGKVFSQNAYLIDHQRLH-KGEEPYKCNKCQKAFILKKSLILHQRIHSGEKPY---KCDECGKTFAQTTYLIDH-QRLHSAENPYKCKECGKVFIRSKSLLLHQRVHTEKKTFGCKKCGKIFSSKSNFIDHKRMHSREKPYKCTECGKAFTQSAYLFDHQRLHN-GEKPYECNECGKVFILKKSLILHQRFHTGENLYECKDCGKVFGSNRNLIDHERLHNGEKPYECRECGKTFIMSKSFMVHQKLHTQEKAYKCEDCGKAFSYNSSLLVHRRIHTGEKP-FECSECGRAFSSNRNLIEHKRIHSGEKPYECDECGKCFILKKSLIGHQRIH--TREKSYKCNDCGKVFSYRSNLIAH-QRIH------------------------TGEKPYACSECGKGFTYNRNLIEHQRIHSGEKTYECHVCRKVLTSSRNLMVHQRIHTGEKP-YKCNECGKDFSQNKNLVVHQR 922 HSP 5 Score: 203.371 bits (516), Expect = 1.102e-53 Identity = 128/332 (38.55%), Postives = 185/332 (55.72%), Query Frame = 3 Query: 528 HQCQDCGEIFPTMLGLVEHYNAFHEGLKPFKCDLCGKDFTNKYSLLNHLNLHLDIRPFECEQCGRCYSLKTNLIKHVNTIHKRIQRFQCEQCGKGFYQKWQLQKHVDINHKGIKAFKCTECGKSFGLKRSLVAHQKTHTGIKPFECQVCGKSFYRRYCLDIHSKIHEETRELFQCNECDQTFTLRSNLIAHQKRHTGIKPFQCQVCVKSFFRKSCLLKHQKTHEENQEPAKAFQCTECSKSYASKKALVLHQKTHETRIRPYKCNVCSKTFLRNTHFQDHQKIHLENREQFQCSECEKSFLSKSSLLAHQRKSH---EDAQLLNEASDQAEI 1514 ++C++CG+ F + H H K +KC+ CGK F+ SLL H +H +PFEC +CGR +S NLI+H IH + ++C++CGK F K L H I H K++KC +CGK F + +L+AHQ+ HTG KP+ C CGK F L H +IH + ++C+ C + T NL+ HQ+ HTG KP++C C K F + L+ HQ+ H K ++C +C KS+ SK+ LV HQ+ H T +PY CN CSK F + + HQKIH + + +C EK F S++S L Q+K H E + L N + EI Sbjct: 706 YECRECGKTFIMSKSFMVH-QKLHTQEKAYKCEDCGKAFSYNSSLLVHRRIHTGEKPFECSECGRAFSSNRNLIEH-KRIHSGEKPYECDECGKCFILKKSLIGHQRI-HTREKSYKCNDCGKVFSYRSNLIAHQRIHTGEKPYACSECGKGFTYNRNLIEHQRIHSGEK-TYECHVCRKVLTSSRNLMVHQRIHTGEKPYKCNECGKDFSQNKNLVVHQRMHTGE----KPYECDKCRKSFTSKRNLVGHQRIH-TGEKPYGCNDCSKVFRQRKNLTVHQKIHTDEKP-CECDVSEKEF-SQTSNLHLQQKIHTIEEFSWLQNTNESKIEI 1026 HSP 6 Score: 164.466 bits (415), Expect = 2.362e-41 Identity = 111/376 (29.52%), Postives = 176/376 (46.81%), Query Frame = 3 Query: 1674 ECGKSFSHKRSLVSHQKKHTGNRPFQCEICSKSFFRGYDLQIHMKVHSEARERFQCSECDKSFSSKGNLLAHQRKPHKERSNGLDESMNEDQSLECTECGESFTSKKTLASHQKIHNGIKPFKCDICDKSFLRKSSLKTHQEIHSQTR---------------------------ERLECQDCGESFTSKKTLASHQKIHSGVKPFKCDICDKSFLRKSSLKTHQEIHLETRERFECQDCDKTFTLKKNLLVH-----------CKKYHNDLSHEEIENSDEDENQEETTGSTTQNKSFECTDCGKSYSIKKSLYNHQRTHTSIKPFQCEVCSKSFFRMYELNVHREVHSENRERFQCQECDKSFSNKSNLAAHQR 2687 E G S + ++ G + ++C++C K F + L H ++H+ + +C EC K F + +LL H R + + ++ +C ECG++F+ L +HQ+IH G KP+KC C K F R S L H HS R E +C C ++F KK+L HQ+IHSG KP+KCD C K+F + + L HQ +H ++C++C K F K+LL+H CKK S N + ++ K ++CT+CGK+++ L++HQR H KP++C C K F L +H+ H+ ++C++C K F + NL H+R Sbjct: 346 ELGDSLTFGSAISESLIGTEGKKFYKCDMCCKHFNKISHLINHRRIHT-GEKPHKCKECGKGFIQRSSLLMHLR------------NHSGEKPYKCNECGKAFSQSAYLLNHQRIHTGEKPYKCKECGKGFYRHSGLIIHLRRHSGERPYKCNECGKVFSQNAYLIDHQRLHKGEEPYKCNKCQKAFILKKSLILHQRIHSGEKPYKCDECGKTFAQTTYLIDHQRLH-SAENPYKCKECGKVFIRSKSLLLHQRVHTEKKTFGCKKCGKIFS--------SKSNFIDHKRMHSREKPYKCTECGKAFTQSAYLFDHQRLHNGEKPYECNECGKVFILKKSLILHQRFHT-GENLYECKDCGKVFGSNRNLIDHER 698 HSP 7 Score: 126.716 bits (317), Expect = 1.441e-29 Identity = 81/280 (28.93%), Postives = 141/280 (50.36%), Query Frame = 3 Query: 1941 EDQSLECTECGESFTSKKTLASHQKIHNGIKPFKCDICDKSFLRKSSLKTHQEIHSQTRERLECQDCGESFTSKKTLASHQKIHSGVKPFKCDICDKSFLRKSSLKTHQEIHLETRERFECQDCDKTFTLKKNLLVHCKKYHND------------------LSHEEIENSDEDENQEETTGSTTQNKS-------------FECTDCGKSYSIKKSLYNHQRTHTSIKPFQCEVCSKSFFRMYELNVHREVHSENRERFQCQECDKSFSNKSNLAAHQR 2687 E Q + E G+S T ++ G K +KCD+C K F + S L H+ IH+ + +C++CG+ F + +L H + HSG KP+KC+ C K+F + + L HQ IH + ++C++C K F L++H +++ + + H+ + +E + + KS ++C +CGK+++ L +HQR H++ P++C+ C K F R L +H+ VH+E ++ F C++C K FS+KSN H+R Sbjct: 338 EKQGQKWKELGDSLTFGSAISESLIGTEGKKFYKCDMCCKHFNKISHLINHRRIHTGEKPH-KCKECGKGFIQRSSLLMHLRNHSGEKPYKCNECGKAFSQSAYLLNHQRIHTGEKP-YKCKECGKGFYRHSGLIIHLRRHSGERPYKCNECGKVFSQNAYLIDHQRLHKGEEPYKCNKCQKAFILKKSLILHQRIHSGEKPYKCDECGKTFAQTTYLIDHQRLHSAENPYKCKECGKVFIRSKSLLLHQRVHTE-KKTFGCKKCGKIFSSKSNFIDHKR 614 The following BLAST results are available for this feature:
BLAST of TCONS_00070604 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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